BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G17085.1

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329817 jgi|Araly1|329817|fgenesh1_pm.C_scaffold_7002044           244    3e-64


> Ahg329817 jgi|Araly1|329817|fgenesh1_pm.C_scaffold_7002044
Length=174

 Score =  244 bits (132),  Expect = 3e-64
 Identities = 161/175 (92%), Gaps = 2/175 (1%)
 Strand=Plus/Plus

Query  26   ATGCAAAAATCGTTCTCGTTGATCCAAACAGTGGCAATCTCCGGCGTATTCTCCGCCGTC  85
            ||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGCAGAAATCGTTCACGTTGATCCAAACAGTGGCAATCTCCGGCGTGTTCTCCGCCGTC  60

Query  86   TCATGCTGGTATGGATTCATGTTCGGTAGAGAATCAGCGAGAAAAGAGCTCGGAGGTTTG  145
            || |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| 
Sbjct  61   TCTTGCTGGTATGGATTCATGTTCGGTAGAGAATCCGCGAGAAAAGAGCTCGGCGGTTTA  120

Query  146  ATCGAAGAGCTCCGTCGTGGAGGCTCCAATTCTGATTC-CACTCCCCATTCCTGA  199
            || ||||||||||| |||||||| ||||| |||||||| | |||||||||| |||
Sbjct  121  ATTGAAGAGCTCCGCCGTGGAGGTTCCAACTCTGATTCTC-CTCCCCATTCATGA  174



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13163678205


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5