BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17100.2
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946522 jgi|Araly1|946522|scaffold_702751.1 1788 0.0
> Ahg946522 jgi|Araly1|946522|scaffold_702751.1
Length=1384
Score = 1788 bits (968), Expect = 0.0
Identities = 1036/1069 (97%), Gaps = 4/1069 (0%)
Strand=Plus/Plus
Query 429 AGGAGGACCAGGAAGAGAATACATATGCGGCTAAAGTGAG-CGAGAAACAAGACTTCTCG 487
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 316 AGGAGGACCAGGAAGAGAATACATATGCGGCTAAAGT-AGCCGAGAAACAAGACTTCTCG 374
Query 488 GAGAGCCAGCAAGAGGAAAATGATGGTTGGGAAACTGTGGGCAAAAAGAAACCTGCAAGG 547
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 375 GAGAGCCAGCAAGAGGACAATGATGGTTGGGAAACTGTGGGAAAAAAGAAACCTGCAAGG 434
Query 548 CAATCACATAAGGTCCAGAAGGAGCAATGGCAAGATTACAAACGCCCAGCAAGTGAACAA 607
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 435 CAATCGCATAAGGTCCAGAAGGAGCAATGGCAAGATTACAAACGCCCAGCAAGCGAACAA 494
Query 608 CACTACTCAGACGAAGTTGAAACTTATGGAAACCTAGAACCCTCACAACTAGAGCTCTCA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 CACTACTCAGACGAAGTTGAAACTTATGGAAACCTAGAACCCTCACAACTAGAGCTCTCA 554
Query 668 GGTCTCTCAGAAGCTTGCAACAAACTGTGGGAGCTCGATTTAAACCGCCTTGTTCCTGGA 727
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 555 GGTCTCTCAGAAGCTTGCAACAAACTGTGGGAGCTCGATTCAAACCGCCTTGTTCCTGGA 614
Query 728 AGGGATTATCAAATCGACTGCGGAGATGGGAAAAGGGTCCATGAGAGAGCTGATATGGCT 787
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 AACGATTATCAAATCGACTGCGGAGATGGGAAAAGGGTCCATGAGAGAGCTGATATGGCT 674
Query 788 GAAGGACTACTGTTCTCTTGGGTGAGCGAGGAAGTCTCTAGAAAACCGACTTTCGCCAGA 847
||||||||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct 675 GAAGGACTACTATTCTCTTGGGTGAGCGACGAAGTCTTTAGAAAACCGACTTACGCCAGA 734
Query 848 TTCTGTTCATTGCTTGACAACTACAACCCCAACGAAGGTTACAAAGAAGTGGTCACAGAA 907
|| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 735 TTTTGTTCATTGCTTGACAACTACAACCCGAACGAAGGTTACAAAGAAGTAGTCACAGAA 794
Query 908 GAAGAGAGGCAAGAGCAAGCGGCTTTCATTGAAGAAATTAGCAGAACCTCTGTGATCAAG 967
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 795 GAAGAGAGGCAAGAGCAAGCGGCTTTCATTGAAGAAATTAGCAGAACCGCTGTGATCAAG 854
Query 968 TACCTTCACAGGTACCTTGTGCTCAAGGACGTCGCTCCTGGAAGCTACTTA-GAGTTCAA 1026
||||| |||| ||||||||||||||||||||| ||||||||||||||| | ||||||||
Sbjct 855 TACCTCCACAAGTACCTTGTGCTCAAGGACGTTGCTCCTGGAAGCTAC-CAGGAGTTCAA 913
Query 1027 GAGAATGTTGACAAGTCTCTGGTTCGATCTGTATGGCCGCGGAGGTACATCTGGCTCATC 1086
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||
Sbjct 914 GAGAATGTTGACAAGTCTCTGGTTTGATCTCTATGGCCGCGGAGGTACCTCTGGCTCATC 973
Query 1087 TTCTGCGTTTGAGCATGTCTTTGTAGGTGAGATCAAACAATCTGGTGGGGAACAAGTCTC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 974 TTCTGCGTTTGAGCATGTCTTTGTAGGTGAGATCAAACAATCTGGTGGGGAGCAAGTCTC 1033
Query 1147 TGGATTCCATAACTGGCTTCAGTTTTACTTGGAGGAAGCCAAAGGAACTGTAGATTATCA 1206
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CGGATTCCATAACTGGCTTCAGTTTTACTTGGAGGAAGCCAAAGGAACTGTAGATTATCA 1093
Query 1207 AGGCTATATATTTCCCCGACGTCGCGGTGAAATTCCTGATTCAGAGACTCAGCTGCTAAC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AGGCTATATATTTCCCCGACGTCGCGGTGAAATTCCTGATTCAGAGACTCAGCTGCTAAC 1153
Query 1267 AATCCAATTCGAGTGGAACGGTGTTCTAAAATCAGTCTCAAGTACTCTAGTTGGAGTAAG 1326
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1154 AATCCAATTCGAGTGGAACGGTGTTCTAAAATCAGTCTCAAGTACTCTAGTAGGAGTAAG 1213
Query 1327 TCCAGAGTTCGAGTTGGCTCTATACACCATGTGTTTCTTCATGGGCACAGAAGATAACCA 1386
||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||
Sbjct 1214 TCCAGAGTTCGAGTTGGCTCTATACACAATGTGTTTCTTCATGGGCAGAGAAGAAAACCA 1273
Query 1387 CATTCAGTTGGGTCCATACAATGTCAATGTCAAATGTTACCGACTTGGCAACAACCGTAT 1446
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1274 CATACAGTTGGGTCCATACAATGTCAATGTCAAATGTTACCGACTTGGCAACAACCGTAT 1333
Query 1447 CGGCTCAGCTTTCCCCATTGCAGAATCTTGAAACCTCTCTTGATGGCTC 1495
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 CGGCTCAGCTTTCCCCATTGCAGAATCTTGAAACCTCTCTTGATGGCTC 1382
Score = 320 bits (173), Expect = 2e-86
Identities = 242/272 (89%), Gaps = 18/272 (7%)
Strand=Plus/Plus
Query 149 TTCCTGTTAGAGACAATGGACGGATTGATCAGAGGTTTGGTCGACTCGACGTGGCTATCG 208
||| ||| |||||||||||||||||||||||||||||| | | ||||||||||||| |
Sbjct 6 TTCTTGTGAGAGACAATGGACGGATTGATCAGAGGTTT-G--G--TCGACGTGGCTATTG 60
Query 209 GAGGAAACCAACGCCGCGGCGGAGACGATGGTGGTGATGATGAAGGCAACTCGAGGGACG 268
|||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 61 GAGGAAACCAACGCCGCGGCGGAGAC---------GATGATGAAGGGAACTCGAGGGACG 111
Query 269 AGAGATCCAGATCTACTTGGGCTAATGTTCGTGGTTTCCGGTGAGGAAGAGGATCAGAAT 328
|||||||||||||||||||||| || | ||||||||||||||||| ||||||||||||
Sbjct 112 AGAGATCCAGATCTACTTGGGC---TGAT-GTGGTTTCCGGTGAGGAGGAGGATCAGAAT 167
Query 329 CGCGCGGGAGGATCGTCGCACGGCCGTCGCCAGAATTCAGAGGAGAATCAATGGGAGAAG 388
||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 168 CGCGCGGGAGGATCGTCGCACGGTCGACGCCAGAATTTAGAGGAGAATCAATGGGAGAAG 227
Query 389 AAGGGCGAAAGGCTTCCCACAAGGCATTCACA 420
||||| |||||| |||| ||||||||||||||
Sbjct 228 AAGGGAGAAAGGATTCCTACAAGGCATTCACA 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630540685
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5