BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17150.1
Length=2034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946520 jgi|Araly1|946520|scaffold_702749.1 2508 0.0
> Ahg946520 jgi|Araly1|946520|scaffold_702749.1
Length=1546
Score = 2508 bits (1358), Expect = 0.0
Identities = 1474/1530 (96%), Gaps = 8/1530 (1%)
Strand=Plus/Plus
Query 404 ACTACTACTAGCTCATGAGTTCACTGGTACTTGGAATTAAGATGATTGATCAGTTCATCA 463
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 7 ACTACTACTAGCTCATGAGTTCATTGGTACTTGGAATCAAGATGATTGATCAGTTCATCA 66
Query 464 ACTTTGTAATTCGACCTCCTAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGAGAAGG 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 67 ACTTTGTAATTCGACCTCCTAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGAGAAGG 126
Query 524 AGTTTAGCCTCGGTGGCACAAAGTGTAAAAGACAAGACTTGGAGCTTACAAATTCGAGGG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AGTTTAGCCTCGGTGGCACAAAGTGTAAAAGACAAGACTTGGAGCTTACAAATTCGAGGG 186
Query 584 GTCACACTTTGCGTTGCAGTCATTATGTTCCCTCATCTTCTCGGGAGGATACTCCTCTCC 643
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 187 GTCACACCTTGCGTTGCAGTCATTATGTTCCCTCATCTTCTCTGGAGGATACTCCTCTCC 246
Query 644 CCTGTGTTATATACTGTCATGGCAATAGTGGATGTAGGGCAGATGCAAATGAGGCAGTTA 703
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 247 CCTGTGTTATATACTGTCATGGCAATAGTGGATGTAGAGCAGACGCAAATGAGGCAGTTA 306
Query 704 TGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTAT 763
||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 307 TGGTTCTTCTTCCATCTAACATTACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTAT 366
Query 764 CTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGAAGGATGATCTCAAGACTGTGGTAT 823
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGAAGGATGATCTCAAGACTGTGGTAT 426
Query 824 CTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTG 883
||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 427 CTTACCTTAGAAACAGCGATCAAGTATCGCGTATTGGACTTTGGGGACGATCTATGGGTG 486
Query 884 CAGTTACCAGCCTTCTCTATGGAGCAGAAGATCCTTCAATTGCTGGAATGGTCCTAGACA 943
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 487 CAGTTACCAGCCTTCTTTATGGAGCAGAAGATCCTTCAATTGCTGGAATGGTCTTAGACA 546
Query 944 GTGCATTTTCAAACTTATTTGATCTGATGATGGAACTAGTGGATGTCTACAAAATCCGAC 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 GTGCATTTTCAAACTTATTTGATCTGATGATGGAACTAGTGGATGTCTACAAAATCCGAC 606
Query 1004 TTCCGAAATTCACAGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGG 1063
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TACCGAAATTCACAGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGG 666
Query 1064 CGAAGTTTAATATTATGGATCTCAATTGTGTTAAGGTTTCGCCCAAGACTTTTATTCCAG 1123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 667 CGAAGTTTAATATTATGGATCTCAATTGTGTTAAGGTTTCACCCAAGACTTTTATTCCAG 726
Query 1124 CTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTC 1183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 727 CTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTC 786
Query 1184 TCAAGTGCTATGCGGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGC 1243
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 787 TCAAGTGCTATGCGGGAGACAAAAATATCATCAAGTTTGATGGCGATCACAATTCTTCGC 846
Query 1244 GCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCCCGCCTC 1303
| ||||| |||| |||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 847 GGCCGCAATCTTTTTATGATTCAGTGTTAATATTCTTCTACAATGTTCTTCGCCCGCCTC 906
Query 1304 CAATTTCTTCATCTTACTCATCTAAACTTGAAAGTTATTACAGTTTGGGAGATGTCAATA 1363
||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 907 CAATTTCTTCAGCTTGCTCATCTAAACTTGAAAGTTATTACAGTCTGGGAGATGTCAATA 966
Query 1364 GCGCTACTGGTTTGGATGAGAGTTTTCTGTATGAGATCATATCTGGTCTTCGTTCGGCAT 1423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 GCGCTACTGGTTTGGATGAGAGTTTTCTGTATGAGATCATATCTGGTCTTCGTTCGGCAT 1026
Query 1424 GTATCGATGTTGCAAGTTCTTCTTCTGCACCTCCTGCCCCTCTAACCACAAAGCCAACGA 1483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GTATCGATGTTGCAAGTTCTTCTTCTGCACCTCCTGCCCCTCTAACCACAAAGCCAACGA 1086
Query 1484 ATGAGCTCCTTTCAGAAGCTATGCCCATGATAGATACAG-AT-ACCGTGCTTGTGGAAGA 1541
|||||||||||||||||| |||||||||| ||||| || || || ||||||||||||||
Sbjct 1087 CTGAGCTCCTTTCAGAAGCCATGCCCATGACAGATA-AGGATGAC-GTGCTTGTGGAAGA 1144
Query 1542 TAATGATCACAACGTGGACGACCCTGAAAACTTCGAGGGAAAGCGTATTGATCAGTTTGA 1601
||||||||||||| ||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 1145 TAATGATCACAACATGGACGACCCTGAAAACTTCGAGGGGAGGCCTGTTGATCAGTTTGA 1204
Query 1602 AGAAGGCTGTTCATTTACAAGCTCCAACAGGGAAAGCTGGGGCAGATGCTCTTCACTAGG 1661
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1205 AGATGGATGTTCATTTACAAGCTCCAACAGGGAAAGCTGGGGCAGATGCTCTTCACTAGG 1264
Query 1662 AGGCACTGAAGAAGATGAGAGTTTGACAGCTGGCGAGGGTGATCAGGTCGAGAAAACTGC 1721
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 1265 AGGCACTGAAGAAGATGAAAGTTTGACCGCTTGCGAGGGTGATCAGGTCGAGAAAACTGC 1324
Query 1722 TGATGTAAACACGGAACGAAAGCCaagagattctagtagagaagaagaagaagaagacag 1781
|||| |||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1325 TGATATAAACACGGAACAAAAGCCAAGAGATTCTAGTAGAGAAGAAGAAGAAGAT-A--G 1381
Query 1782 taaggagaagaagattaagaacggaggtgaaacagatgcaaagaagCCTAGACACGAAAA 1841
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1382 TAAGGAGAAGAAAATTAAGAACGGAGGTGAAACAGATGCCAAGAAGCCTAGACACGAAAA 1441
Query 1842 ATTGGAAAGATTGGAGGCCTTTAGCAAAAGACTGCGGCATTACATCCTAAAGCGAGTAAA 1901
|||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1442 ATTGGAAAGATTGGAGGCTTTTAGCAAAAGACTGCGGCATCGCATCCTAAAGCGAGTAAA 1501
Query 1902 CCATAGAAGACATCGTTCACCTTGAC-AAA 1930
|||||||||||| ||||||||||||| |||
Sbjct 1502 CCATAGAAGACACCGTTCACCTTGACGAAA 1531
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76485211960
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5