BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17150.1 Length=2034 Score E Sequences producing significant alignments: (Bits) Value Ahg946520 jgi|Araly1|946520|scaffold_702749.1 2508 0.0 > Ahg946520 jgi|Araly1|946520|scaffold_702749.1 Length=1546 Score = 2508 bits (1358), Expect = 0.0 Identities = 1474/1530 (96%), Gaps = 8/1530 (1%) Strand=Plus/Plus Query 404 ACTACTACTAGCTCATGAGTTCACTGGTACTTGGAATTAAGATGATTGATCAGTTCATCA 463 ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| Sbjct 7 ACTACTACTAGCTCATGAGTTCATTGGTACTTGGAATCAAGATGATTGATCAGTTCATCA 66 Query 464 ACTTTGTAATTCGACCTCCTAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGAGAAGG 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 ACTTTGTAATTCGACCTCCTAGGGCTGAGTATGATCCTGATCAGTATTTGTGGGAGAAGG 126 Query 524 AGTTTAGCCTCGGTGGCACAAAGTGTAAAAGACAAGACTTGGAGCTTACAAATTCGAGGG 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 AGTTTAGCCTCGGTGGCACAAAGTGTAAAAGACAAGACTTGGAGCTTACAAATTCGAGGG 186 Query 584 GTCACACTTTGCGTTGCAGTCATTATGTTCCCTCATCTTCTCGGGAGGATACTCCTCTCC 643 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 187 GTCACACCTTGCGTTGCAGTCATTATGTTCCCTCATCTTCTCTGGAGGATACTCCTCTCC 246 Query 644 CCTGTGTTATATACTGTCATGGCAATAGTGGATGTAGGGCAGATGCAAATGAGGCAGTTA 703 ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 247 CCTGTGTTATATACTGTCATGGCAATAGTGGATGTAGAGCAGACGCAAATGAGGCAGTTA 306 Query 704 TGGTTCTCCTCCCATCTAACATAACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTAT 763 ||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 307 TGGTTCTTCTTCCATCTAACATTACTGTTTTCACCCTTGACTTCTCGGGGTCAGGCTTAT 366 Query 764 CTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGAAGGATGATCTCAAGACTGTGGTAT 823 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 CTGAGGGTGATTATGTAAGCCTTGGCTGGCATGAGAAGGATGATCTCAAGACTGTGGTAT 426 Query 824 CTTACCTGAGAAACAGCAATCAAGTATCCCGTATTGGACTTTGGGGACGATCTATGGGTG 883 ||||||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 427 CTTACCTTAGAAACAGCGATCAAGTATCGCGTATTGGACTTTGGGGACGATCTATGGGTG 486 Query 884 CAGTTACCAGCCTTCTCTATGGAGCAGAAGATCCTTCAATTGCTGGAATGGTCCTAGACA 943 |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| Sbjct 487 CAGTTACCAGCCTTCTTTATGGAGCAGAAGATCCTTCAATTGCTGGAATGGTCTTAGACA 546 Query 944 GTGCATTTTCAAACTTATTTGATCTGATGATGGAACTAGTGGATGTCTACAAAATCCGAC 1003 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 GTGCATTTTCAAACTTATTTGATCTGATGATGGAACTAGTGGATGTCTACAAAATCCGAC 606 Query 1004 TTCCGAAATTCACAGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGG 1063 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 607 TACCGAAATTCACAGTTAAAGTGGCTGTGCAGTACATGCGGCGTATAATTCAGAAAAAGG 666 Query 1064 CGAAGTTTAATATTATGGATCTCAATTGTGTTAAGGTTTCGCCCAAGACTTTTATTCCAG 1123 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 667 CGAAGTTTAATATTATGGATCTCAATTGTGTTAAGGTTTCACCCAAGACTTTTATTCCAG 726 Query 1124 CTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTC 1183 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 727 CTTTATTTGGGCATGCAAGCGGAGACAAATTCATCCAACCTCATCACTCTGACCTCATTC 786 Query 1184 TCAAGTGCTATGCGGGAGACAAAAATATCATCAAGTTTGATGGTGATCACAACTCTTCGC 1243 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 787 TCAAGTGCTATGCGGGAGACAAAAATATCATCAAGTTTGATGGCGATCACAATTCTTCGC 846 Query 1244 GCCCGCAGTCTTATTATGATTCAGTATTAGTATTCTTCTACAATGTTCTTCGCCCGCCTC 1303 | ||||| |||| |||||||||||| ||| |||||||||||||||||||||||||||||| Sbjct 847 GGCCGCAATCTTTTTATGATTCAGTGTTAATATTCTTCTACAATGTTCTTCGCCCGCCTC 906 Query 1304 CAATTTCTTCATCTTACTCATCTAAACTTGAAAGTTATTACAGTTTGGGAGATGTCAATA 1363 ||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 907 CAATTTCTTCAGCTTGCTCATCTAAACTTGAAAGTTATTACAGTCTGGGAGATGTCAATA 966 Query 1364 GCGCTACTGGTTTGGATGAGAGTTTTCTGTATGAGATCATATCTGGTCTTCGTTCGGCAT 1423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 967 GCGCTACTGGTTTGGATGAGAGTTTTCTGTATGAGATCATATCTGGTCTTCGTTCGGCAT 1026 Query 1424 GTATCGATGTTGCAAGTTCTTCTTCTGCACCTCCTGCCCCTCTAACCACAAAGCCAACGA 1483 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1027 GTATCGATGTTGCAAGTTCTTCTTCTGCACCTCCTGCCCCTCTAACCACAAAGCCAACGA 1086 Query 1484 ATGAGCTCCTTTCAGAAGCTATGCCCATGATAGATACAG-AT-ACCGTGCTTGTGGAAGA 1541 |||||||||||||||||| |||||||||| ||||| || || || |||||||||||||| Sbjct 1087 CTGAGCTCCTTTCAGAAGCCATGCCCATGACAGATA-AGGATGAC-GTGCTTGTGGAAGA 1144 Query 1542 TAATGATCACAACGTGGACGACCCTGAAAACTTCGAGGGAAAGCGTATTGATCAGTTTGA 1601 ||||||||||||| ||||||||||||||||||||||||| | || | ||||||||||||| Sbjct 1145 TAATGATCACAACATGGACGACCCTGAAAACTTCGAGGGGAGGCCTGTTGATCAGTTTGA 1204 Query 1602 AGAAGGCTGTTCATTTACAAGCTCCAACAGGGAAAGCTGGGGCAGATGCTCTTCACTAGG 1661 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1205 AGATGGATGTTCATTTACAAGCTCCAACAGGGAAAGCTGGGGCAGATGCTCTTCACTAGG 1264 Query 1662 AGGCACTGAAGAAGATGAGAGTTTGACAGCTGGCGAGGGTGATCAGGTCGAGAAAACTGC 1721 |||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||| Sbjct 1265 AGGCACTGAAGAAGATGAAAGTTTGACCGCTTGCGAGGGTGATCAGGTCGAGAAAACTGC 1324 Query 1722 TGATGTAAACACGGAACGAAAGCCaagagattctagtagagaagaagaagaagaagacag 1781 |||| |||||||||||| |||||||||||||||||||||||||||||||||||| | | Sbjct 1325 TGATATAAACACGGAACAAAAGCCAAGAGATTCTAGTAGAGAAGAAGAAGAAGAT-A--G 1381 Query 1782 taaggagaagaagattaagaacggaggtgaaacagatgcaaagaagCCTAGACACGAAAA 1841 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1382 TAAGGAGAAGAAAATTAAGAACGGAGGTGAAACAGATGCCAAGAAGCCTAGACACGAAAA 1441 Query 1842 ATTGGAAAGATTGGAGGCCTTTAGCAAAAGACTGCGGCATTACATCCTAAAGCGAGTAAA 1901 |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 1442 ATTGGAAAGATTGGAGGCTTTTAGCAAAAGACTGCGGCATCGCATCCTAAAGCGAGTAAA 1501 Query 1902 CCATAGAAGACATCGTTCACCTTGAC-AAA 1930 |||||||||||| ||||||||||||| ||| Sbjct 1502 CCATAGAAGACACCGTTCACCTTGACGAAA 1531 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 76485211960 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5