BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17160.1 Length=618 Score E Sequences producing significant alignments: (Bits) Value Ahg329812 jgi|Araly1|329812|fgenesh1_pm.C_scaffold_7002039 992 0.0 Ahg493160 jgi|Araly1|493160|fgenesh2_kg.7__2593__AT4G17170.1 699 0.0 > Ahg329812 jgi|Araly1|329812|fgenesh1_pm.C_scaffold_7002039 Length=618 Score = 992 bits (537), Expect = 0.0 Identities = 593/620 (96%), Gaps = 4/620 (1%) Strand=Plus/Plus Query 1 ATGTCTTATGCTTATAGATTTAAGTATATCATCATCGGTGATACTGGAGTAGGGAAATCA 60 ||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 1 ATGTCTTATGCATATAGATTTAAGTATATCCTCATCGGTGATACTGGAGTTGGGAAATCA 60 Query 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAGCAGTGCATGATCTCACCATTGGT 120 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAGCGGTGCATGATCTCACCATTGGT 120 Query 121 GTTGAATTTGGGGCCAAGACGATCACTATCGACAACAAACCCATCAAACTTCAGATCTGG 180 |||||||||||| |||||| ||||||||||||||||| |||||||||||| ||||||||| Sbjct 121 GTTGAATTTGGGTCCAAGAAGATCACTATCGACAACATACCCATCAAACTCCAGATCTGG 180 Query 181 GATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCATACTATAGAGGGCGTGCC 240 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 181 GATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCTTACTATAGAGGGCGTGCC 240 Query 241 GGTACATTGCTTGTATATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCTGG 300 || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GGGACATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCTGG 300 Query 301 CTAGAAGAGGCAAGACAGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATAAG 360 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 CTAGAAGAGGCAAGGCGGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATAAG 360 Query 361 TGTGATCTTGAAGATAAAAGGACAGTGAGTACAGAGGAAGGAGAACAGTTTGCTAGGGAG 420 |||||||||||||| |||||| |||||||||||||||||||||| |||||||| |||||| Sbjct 361 TGTGATCTTGAAGAGAAAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAGGGAG 420 Query 421 CATGGTCTTATATTCATGGAGGCCTCTGCTAAGACTGCTCACAATGTCGAGGAGGCATTC 480 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 421 CATGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCACAATGTCGAGGAGGCATTC 480 Query 481 GTCGAGACAGCCGCAACAATATACAAAAGGATTCAAGATGGTGTGGTTGATGAGGCAAAT 540 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATCGAGACAGCCGCAACAATATACAAAAGGATTCAAGATGGTGTGGTTGATGAGGCAAAT 540 Query 541 GAGCCTGGAATAACTCCAGGGCCGTTTGGTGGAAAAGATGC-ATCCTCCTC-ACAGCAAA 598 ||||||||||||||||||||||| |||| |||| | ||||| ||| ||||| | |||||| Sbjct 541 GAGCCTGGAATAACTCCAGGGCCATTTGATGGATATGATGCCATC-TCCTCGA-AGCAAA 598 Query 599 GAAGAGGGTGCTGCGGCTGA 618 |||||||||||||||||||| Sbjct 599 GAAGAGGGTGCTGCGGCTGA 618 > Ahg493160 jgi|Araly1|493160|fgenesh2_kg.7__2593__AT4G17170.1 Length=950 Score = 699 bits (378), Expect = 0.0 Identities = 491/546 (90%), Gaps = 6/546 (1%) Strand=Plus/Plus Query 1 ATGTCTTATGCTTATAGATTTAAGTATATCATCATCGGTGATACTGGAGTAGGGAAATCA 60 ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||| Sbjct 140 ATGTCTTATGCTTATCTCTTCAAGTATATCATCATCGGCGATACTGGAGTAGGGAAATCA 199 Query 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAG-CAGTGCATGATCTCACCATTGG 119 || ||||||||| ||||||||||||||||||||| || | |||||||| || |||||||| Sbjct 200 TGTCTTCTGCTTCAGTTCACCGACAAGAGGTTTC-AGCCGGTGCATGACCTTACCATTGG 258 Query 120 TGTTGAATTTGGGGCCAAGACGATCACTATCGACAACAAACCCATCAAACTTCAGATCTG 179 ||||||||||||||| | || |||||| |||||||||||||| ||||| ||||||||||| Sbjct 259 TGTTGAATTTGGGGCTAGGATGATCACCATCGACAACAAACCTATCAAGCTTCAGATCTG 318 Query 180 GGATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCATACTATAGAGG-GCGTG 238 ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || || Sbjct 319 GGATACGGCTGGTCAAGAATCCTTTAGGTCTATTACAAGGTCATACTATAGAGGAGC-TG 377 Query 239 CCGGTACATTGCTTGTATATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCT 298 | || |||||||||| |||||||||||||||||||||||||||||||||||||| |||| Sbjct 378 CAGGGGCATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCTAGCT 437 Query 299 GGCTAGAAGAGGCAAGACAGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATA 358 |||||||||| ||||| |||||||||| || ||||||||||| ||||||||||||||||| Sbjct 438 GGCTAGAAGATGCAAGGCAGCATGCAAATGCAAATATGACGATAATGCTCATTGGGAATA 497 Query 359 AGTGTGATCTTGAAGATAAAAGGACAGTGAGTACAGAGGAAGGAGAACAGTTTGCTAGGG 418 |||||||||||| | | |||| | ||||| |||||||||||||| |||||||| | || Sbjct 498 AGTGTGATCTTGCTCACAGAAGGGCTGTGAGCACAGAGGAAGGAGAGCAGTTTGCAAAGG 557 Query 419 AGCATGGTCTTATATTCATGGAGGCCTCTGCTAAGACTGCTCACAATGTCGAGGAGGCAT 478 |||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||| Sbjct 558 AGCACGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCAGAATGTTGAGGAGGCAT 617 Query 479 TCGTCGAGACAGCCGCAACAATATACAA-AAGGATTCAAGATGGTGTGGTTGATGAGGCA 537 || | |||||||||||||||||||||| ||| ||||||||||||||| |||||| | || Sbjct 618 TCATTAAGACAGCCGCAACAATATACAAGAAG-ATTCAAGATGGTGTGTTTGATGTGTCA 676 Query 538 AATGAG 543 |||||| Sbjct 677 AATGAG 682 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22606889781 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5