BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17160.1
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg329812 jgi|Araly1|329812|fgenesh1_pm.C_scaffold_7002039 992 0.0
Ahg493160 jgi|Araly1|493160|fgenesh2_kg.7__2593__AT4G17170.1 699 0.0
> Ahg329812 jgi|Araly1|329812|fgenesh1_pm.C_scaffold_7002039
Length=618
Score = 992 bits (537), Expect = 0.0
Identities = 593/620 (96%), Gaps = 4/620 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTATGCTTATAGATTTAAGTATATCATCATCGGTGATACTGGAGTAGGGAAATCA 60
||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1 ATGTCTTATGCATATAGATTTAAGTATATCCTCATCGGTGATACTGGAGTTGGGAAATCA 60
Query 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAGCAGTGCATGATCTCACCATTGGT 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAGCGGTGCATGATCTCACCATTGGT 120
Query 121 GTTGAATTTGGGGCCAAGACGATCACTATCGACAACAAACCCATCAAACTTCAGATCTGG 180
|||||||||||| |||||| ||||||||||||||||| |||||||||||| |||||||||
Sbjct 121 GTTGAATTTGGGTCCAAGAAGATCACTATCGACAACATACCCATCAAACTCCAGATCTGG 180
Query 181 GATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCATACTATAGAGGGCGTGCC 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 181 GATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCTTACTATAGAGGGCGTGCC 240
Query 241 GGTACATTGCTTGTATATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCTGG 300
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GGGACATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCTGG 300
Query 301 CTAGAAGAGGCAAGACAGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATAAG 360
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CTAGAAGAGGCAAGGCGGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATAAG 360
Query 361 TGTGATCTTGAAGATAAAAGGACAGTGAGTACAGAGGAAGGAGAACAGTTTGCTAGGGAG 420
|||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct 361 TGTGATCTTGAAGAGAAAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAGGGAG 420
Query 421 CATGGTCTTATATTCATGGAGGCCTCTGCTAAGACTGCTCACAATGTCGAGGAGGCATTC 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 421 CATGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCACAATGTCGAGGAGGCATTC 480
Query 481 GTCGAGACAGCCGCAACAATATACAAAAGGATTCAAGATGGTGTGGTTGATGAGGCAAAT 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCGAGACAGCCGCAACAATATACAAAAGGATTCAAGATGGTGTGGTTGATGAGGCAAAT 540
Query 541 GAGCCTGGAATAACTCCAGGGCCGTTTGGTGGAAAAGATGC-ATCCTCCTC-ACAGCAAA 598
||||||||||||||||||||||| |||| |||| | ||||| ||| ||||| | ||||||
Sbjct 541 GAGCCTGGAATAACTCCAGGGCCATTTGATGGATATGATGCCATC-TCCTCGA-AGCAAA 598
Query 599 GAAGAGGGTGCTGCGGCTGA 618
||||||||||||||||||||
Sbjct 599 GAAGAGGGTGCTGCGGCTGA 618
> Ahg493160 jgi|Araly1|493160|fgenesh2_kg.7__2593__AT4G17170.1
Length=950
Score = 699 bits (378), Expect = 0.0
Identities = 491/546 (90%), Gaps = 6/546 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTATGCTTATAGATTTAAGTATATCATCATCGGTGATACTGGAGTAGGGAAATCA 60
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||
Sbjct 140 ATGTCTTATGCTTATCTCTTCAAGTATATCATCATCGGCGATACTGGAGTAGGGAAATCA 199
Query 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAG-CAGTGCATGATCTCACCATTGG 119
|| ||||||||| ||||||||||||||||||||| || | |||||||| || ||||||||
Sbjct 200 TGTCTTCTGCTTCAGTTCACCGACAAGAGGTTTC-AGCCGGTGCATGACCTTACCATTGG 258
Query 120 TGTTGAATTTGGGGCCAAGACGATCACTATCGACAACAAACCCATCAAACTTCAGATCTG 179
||||||||||||||| | || |||||| |||||||||||||| ||||| |||||||||||
Sbjct 259 TGTTGAATTTGGGGCTAGGATGATCACCATCGACAACAAACCTATCAAGCTTCAGATCTG 318
Query 180 GGATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCATACTATAGAGG-GCGTG 238
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||
Sbjct 319 GGATACGGCTGGTCAAGAATCCTTTAGGTCTATTACAAGGTCATACTATAGAGGAGC-TG 377
Query 239 CCGGTACATTGCTTGTATATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCT 298
| || |||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 378 CAGGGGCATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCTAGCT 437
Query 299 GGCTAGAAGAGGCAAGACAGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATA 358
|||||||||| ||||| |||||||||| || ||||||||||| |||||||||||||||||
Sbjct 438 GGCTAGAAGATGCAAGGCAGCATGCAAATGCAAATATGACGATAATGCTCATTGGGAATA 497
Query 359 AGTGTGATCTTGAAGATAAAAGGACAGTGAGTACAGAGGAAGGAGAACAGTTTGCTAGGG 418
|||||||||||| | | |||| | ||||| |||||||||||||| |||||||| | ||
Sbjct 498 AGTGTGATCTTGCTCACAGAAGGGCTGTGAGCACAGAGGAAGGAGAGCAGTTTGCAAAGG 557
Query 419 AGCATGGTCTTATATTCATGGAGGCCTCTGCTAAGACTGCTCACAATGTCGAGGAGGCAT 478
|||| |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 558 AGCACGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCAGAATGTTGAGGAGGCAT 617
Query 479 TCGTCGAGACAGCCGCAACAATATACAA-AAGGATTCAAGATGGTGTGGTTGATGAGGCA 537
|| | |||||||||||||||||||||| ||| ||||||||||||||| |||||| | ||
Sbjct 618 TCATTAAGACAGCCGCAACAATATACAAGAAG-ATTCAAGATGGTGTGTTTGATGTGTCA 676
Query 538 AATGAG 543
||||||
Sbjct 677 AATGAG 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22606889781
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5