BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17170.1
Length=977
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493160 jgi|Araly1|493160|fgenesh2_kg.7__2593__AT4G17170.1 1546 0.0
Ahg329812 jgi|Araly1|329812|fgenesh1_pm.C_scaffold_7002039 704 0.0
> Ahg493160 jgi|Araly1|493160|fgenesh2_kg.7__2593__AT4G17170.1
Length=950
Score = 1546 bits (837), Expect = 0.0
Identities = 927/966 (96%), Gaps = 24/966 (2%)
Strand=Plus/Plus
Query 1 TCGCTGGATTTGCTGGAAAACAAACCGTCA-ATCTCCGTCTTTATAGAGaaaaaaaGATT 59
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 TCGCTGGATTTGCTGGAAAACAAACCGTCATTTCTCCGTCTTTATAGAGAAAAAAAGA-- 58
Query 60 CTCTTCTCTTCTCGTTCTCATCATCGTCTTAAAGAAGGAATTCG--ATTTT-TCGCCTGA 116
||||||||||| |||||||||||||| || ||||| |||| ||||||||
Sbjct 59 ---TTCTCTTCTCG------TCATCGTCTTAAAG--GG-ATTCGTTTTTTTCTCGCCTGA 106
Query 117 ACCTGCGGA--TT-TTTCGATTCTTCAAATTCAATGTCTTATGCTTATCTCTTCAAGTAT 173
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 107 ACCTGCGGATTTTCTTTCGATTCTTCAAATTCAATGTCTTATGCTTATCTCTTCAAGTAT 166
Query 174 ATCATCATCGGCGATACTGGAGTGGGGAAATCATGTCTTCTGCTTCAGTTCACCGACAAG 233
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 167 ATCATCATCGGCGATACTGGAGTAGGGAAATCATGTCTTCTGCTTCAGTTCACCGACAAG 226
Query 234 AGGTTTCAGCCGGTGCATGACCTTACCATTGGTGTTGAATTTGGGGCTAGGATGATCACC 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 227 AGGTTTCAGCCGGTGCATGACCTTACCATTGGTGTTGAATTTGGGGCTAGGATGATCACC 286
Query 294 ATCGATAACAAACCTATCAAGCTTCAGATCTGGGATACGGCTGGTCAAGAATCCTTTAGG 353
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 ATCGACAACAAACCTATCAAGCTTCAGATCTGGGATACGGCTGGTCAAGAATCCTTTAGG 346
Query 354 TCTATTACAAGGTCATACTATAGAGGAGCTGCAGGGGCATTGCTTGTCTATGATATCACA 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TCTATTACAAGGTCATACTATAGAGGAGCTGCAGGGGCATTGCTTGTCTATGATATCACA 406
Query 414 AGGAGGGAGACATTTAACCATCTAGCTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAAT 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 407 AGGAGGGAGACATTTAACCATCTAGCTAGCTGGCTAGAAGATGCAAGGCAGCATGCAAAT 466
Query 474 GCAAATATGACGATAATGCTCATTGGGAATAAGTGTGATCTTGCTCACAGAAGGGCAGTG 533
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 467 GCAAATATGACGATAATGCTCATTGGGAATAAGTGTGATCTTGCTCACAGAAGGGCTGTG 526
Query 534 AGTACAGAGGAAGGAGAGCAGTTTGCAAAGGAGCACGGTCTTATATTCATGGAGGCCTCT 593
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 AGCACAGAGGAAGGAGAGCAGTTTGCAAAGGAGCACGGTCTTATATTCATGGAGGCCTCT 586
Query 594 GCCAAGACTGCTCAGAATGTTGAGGAGGCATTCATTAAGACAGCTGCAACAATATACAAG 653
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 587 GCCAAGACTGCTCAGAATGTTGAGGAGGCATTCATTAAGACAGCCGCAACAATATACAAG 646
Query 654 AAGATTCAAGATGGTGTGTTTGATGTGTCAAATGAGTCATATGGAATCAAAGTTGGATAT 713
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 647 AAGATTCAAGATGGTGTGTTTGATGTGTCAAATGAGTCATATGGAATAAAAGTTGGATAT 706
Query 714 GGAGGAATTCCAGGACCATCAGGTGGAAGAGATGGATCAACCTCGCAAGGAGGAGGGTGC 773
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 707 GGAGGAATTCCAGGACCATCAGGTGGAAGAGATGGATCTACCTCCCAAGGAGGAGGGTGC 766
Query 774 TGCGGCTGAGATGGGAAAAATATGTCTATGTCATTATGTAAAAATGATCACATATGATAT 833
|||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||
Sbjct 767 TGCGGCTGAGATGGGAAA--TATGTCTATATCATCATGTAAAAATGATCACATATGATAT 824
Query 834 AGCAAAAATGTCTCTGCTTCTTT-CTATAGTTGTAAATCGTTTTGGAATTCGATTTGGTG 892
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 825 AGCAAAAATGTCTCTGCTTCTTTTCTATAGTTGTAAATCGTTTTGGAATTCGATTTGGTG 884
Query 893 ACTGTGTTGTGGTTGGTTTTGGAACGGTTTGACAATACACGTGTATGCCTATTCATATAT 952
||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 885 ACTGTGTTGTGATGGGTTTTGGAACGGTTTGACAATACACGTGTATGTCTATTCATATAT 944
Query 953 CTAAAA 958
||||||
Sbjct 945 CTAAAA 950
> Ahg329812 jgi|Araly1|329812|fgenesh1_pm.C_scaffold_7002039
Length=618
Score = 704 bits (381), Expect = 0.0
Identities = 492/546 (90%), Gaps = 6/546 (1%)
Strand=Plus/Plus
Query 147 ATGTCTTATGCTTATCTCTTCAAGTATATCATCATCGGCGATACTGGAGTGGGGAAATCA 206
||||||||||| ||| || ||||||||| ||||||| ||||||||||| |||||||||
Sbjct 1 ATGTCTTATGCATATAGATTTAAGTATATCCTCATCGGTGATACTGGAGTTGGGAAATCA 60
Query 207 TGTCTTCTGCTTCAGTTCACCGACAAGAGGTTTC-AGCCGGTGCATGACCTTACCATTGG 265
|| ||||||||| ||||||||||||||||||||| || |||||||||| || ||||||||
Sbjct 61 TGCCTTCTGCTTAAGTTCACCGACAAGAGGTTTCAAG-CGGTGCATGATCTCACCATTGG 119
Query 266 TGTTGAATTTGGGGCTAGGATGATCACCATCGATAACAAACCTATCAAGCTTCAGATCTG 325
||||||||||||| | | || |||||| ||||| |||| ||| ||||| || ||||||||
Sbjct 120 TGTTGAATTTGGGTCCAAGAAGATCACTATCGACAACATACCCATCAAACTCCAGATCTG 179
Query 326 GGATACGGCTGGTCAAGAATCCTTTAGGTCTATTACAAGGTCATACTATAGAGGAGC-TG 384
||||||||||||||||||||| ||||||||| |||||||||| ||||||||||| || ||
Sbjct 180 GGATACGGCTGGTCAAGAATCATTTAGGTCTGTTACAAGGTCTTACTATAGAGG-GCGTG 238
Query 385 CAGGGGCATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCTAGCT 444
| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 239 CCGGGACATTGCTTGTCTATGATATCACAAGGAGGGAGACATTTAACCATCTAGCCAGCT 298
Query 445 GGCTAGAAGATGCAAGGCAGCATGCAAATGCAAATATGACGATAATGCTCATTGGGAATA 504
|||||||||| ||||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 299 GGCTAGAAGAGGCAAGGCGGCATGCAAGTGAAAATATGACGACAATGCTCATTGGGAATA 358
Query 505 AGTGTGATCTTGCTCACAGAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAAGG 564
|||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 AGTGTGATCTTGAAGAGAAAAGGGCAGTGAGTACAGAGGAAGGAGAGCAGTTTGCAAGGG 418
Query 565 AGCACGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCAGAATGTTGAGGAGGCAT 624
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 419 AGCATGGTCTTATATTCATGGAGGCCTCTGCCAAGACTGCTCACAATGTCGAGGAGGCAT 478
Query 625 TCATTAAGACAGCTGCAACAATATACAAGAAG-ATTCAAGATGGTGTGTTTGATGTGTCA 683
|||| ||||||| |||||||||||||| ||| ||||||||||||||| |||||| | ||
Sbjct 479 TCATCGAGACAGCCGCAACAATATACAA-AAGGATTCAAGATGGTGTGGTTGATGAGGCA 537
Query 684 AATGAG 689
||||||
Sbjct 538 AATGAG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36293016984
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5