BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17190.1
Length=1292
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493157 jgi|Araly1|493157|fgenesh2_kg.7__2590__AT4G17190.1 1860 0.0
Ahg948214 jgi|Araly1|948214|scaffold_800101.1 1216 0.0
> Ahg493157 jgi|Araly1|493157|fgenesh2_kg.7__2590__AT4G17190.1
Length=1131
Score = 1860 bits (1007), Expect = 0.0
Identities = 1073/1106 (97%), Gaps = 0/1106 (0%)
Strand=Plus/Plus
Query 39 ATCCTATCAATGGCGGATCTGAAATCAACCTTCCTCGACGTTTACTCTGTTCTCAAGTCT 98
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATCTTATCAATGGCGGATCTGAAATCAACCTTCCTCGACGTTTACTCTATTCTCAAGTCT 60
Query 99 GATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGG 158
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAGTCTCGTCAATGGCTTGAACGG 120
Query 159 ATGCTTGACTACAATGTACGCGGAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGC 218
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 121 ATGCTTGACTACAATGTACGTGGCGGGAAGCTTAATCGTGGTCTCTCTGTGGTTGATAGC 180
Query 219 TACAAGCTGTTGAAGCAAGGTCAAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCT 278
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TACAAGCTCTTGAAGCAAGGCCAAGACTTGACGGAGAAAGAGACTTTCCTCTCGTGTGCT 240
Query 279 CTTGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGAC 338
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTCGGGTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGAC 300
Query 339 AACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATT 360
Query 399 GCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTC 458
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 361 GCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAACACTTC 420
Query 459 AGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACA 518
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 421 AGGGAAATGCCTTACTATGTTGACCTTGTTGATTTGTTTAACGAGGTAGAGTTTCAAACA 480
Query 519 GCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAG 578
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 GCTTGTGGCCAGATGATTGATTTGATCACTACCTTTGATGGAGAAAAAGATTTGTCTAAG 540
Query 579 TACTCCTTGCAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTAT 638
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 TACTCCTTGCAAATCCATCGGCGTATTGTCCAGTACAAAACAGCTTATTACTCATTTTAT 600
Query 639 CTTCCTGTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTG 698
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTCCTGTTGCTTGTGCATTGCTTATGGCGGGAGAAAATTTGGAAAACCATACTGATGTG 660
Query 699 AAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGT 758
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 661 AAGAATGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGATTGT 720
Query 759 TTTGCTGATCCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCC 818
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 721 TTTGCTGATCCCGAGACACTTGGCAAGATAGGGACAGACATAGAGGATTTCAAATGCTCC 780
Query 819 TGGTTGGTAGTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAG 878
|||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 781 TGGTTGGTGGTTAAGGCATTGGAACGCTGCAATGAAGAACAAACTAAGATATTATACGAG 840
Query 879 AACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTT 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTT 900
Query 939 GATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 GATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTG 960
Query 999 ATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATC 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATC 1020
Query 1059 TACAAGAGGCAGAAGTAGAGACATACTCGGGCCTCTCTCCGTTTTATTCTTCTGACATTT 1118
|||||||||||||||||||||| ||||| ||| ||||||||||| |||||||||||||||
Sbjct 1021 TACAAGAGGCAGAAGTAGAGACCTACTCTGGCTTCTCTCCGTTTAATTCTTCTGACATTT 1080
Query 1119 ATGTATTGGTGCATGACTTCTTTTGC 1144
|||||||| | |||||| ||||||||
Sbjct 1081 ATGTATTGTTTCATGACCTCTTTTGC 1106
> Ahg948214 jgi|Araly1|948214|scaffold_800101.1
Length=1072
Score = 1216 bits (658), Expect = 0.0
Identities = 908/1031 (88%), Gaps = 8/1031 (1%)
Strand=Plus/Plus
Query 50 GGCGGATCTGAAATCAACCTTCCTCGACGTTTACTCTGTTCTCAAGTCTGATCTGCTTCA 109
||| ||||| || |||||||| ||| ||||||| || ||||||||||| || || |||||
Sbjct 26 GGCCGATCTCAAGTCAACCTTTCTCAACGTTTATTCCGTTCTCAAGTCCGACCTCCTTCA 85
Query 110 AGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGATGCTTGACTA 169
|| |||||||| ||||||||| | |||||||||| ||| |||| || ||||| |||||
Sbjct 86 CGACCCTTCCTTCGAATTCACCGATGAATCTCGTCTCTGGGTTGACCGTATGCTCGACTA 145
Query 170 CAATGTACGCGGAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTGTT 229
||||||||| |||||||| || ||||| |||||||| || ||||| |||| ||| || ||
Sbjct 146 CAATGTACGTGGAGGGAAACTCAATCGGGGTCTCTCCGTTGTTGACAGCTTCAAACTTTT 205
Query 230 GAAGCAAGGTC-AAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCTCTTGGTTGGT 288
||||||||| | |||| ||||| ||| ||||| ||| ||||| |||||||| |||||||
Sbjct 206 GAAGCAAGG-CAAAGATTTGACTGAGCAAGAGGTTTTTCTCTCTTGTGCTCTCGGTTGGT 264
Query 289 GCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCA 348
||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 265 GCATTGAATGGCTTCAAGCTTATTTCCTTGTACTTGATGACATTATGGATAACTCTGTCA 324
Query 349 CACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACG 408
| ||||||||||| ||||| ||||| ||| || ||||||||||| ||||||| ||||
Sbjct 325 CCCGCCGTGGCCAACCTTGCTGGTTCAGAGTTCCTCAGGTTGGTATGGTTGCCATCAACG 384
Query 409 ATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTCAGGGAAATGC 468
|||||||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||
Sbjct 385 ATGGGATTCTGCTTCGCAATCACATCCACAGGATTCTCAAAAAGCACTTCCGGGGAATGC 444
Query 469 CTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGCGGCC 528
||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||||
Sbjct 445 CTTACTATGTTGACCTCGTTGATTTGTTTAATGAGGTTGAGTTGCAAACAGCTTGTGGCC 504
Query 529 AGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTG- 587
||||||| |||||||||||||||||||| || ||||| |||||||| |||||||| |||
Sbjct 505 AGATGATAGATTTGATCACCACCTTTGAAGGCGAAAAGGATTTGTCCAAGTACTCATTGT 564
Query 588 CAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTT 647
||| || | ||||||||||| |||||||||| ||||||||||| |||||||| ||||||
Sbjct 565 CAATTC-ACCGGCGTATTGTCCAGTACAAAACGGCTTATTACTCGTTTTATCTCCCTGTT 623
Query 648 GCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTT 707
||||| |||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||
Sbjct 624 GCTTGTGCATTGCTTATGGCGGGTGAAAATTTGGAAAACCATATTGATGTGAAGAATGTT 683
Query 708 CTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGTTTTGCTGAT 767
||||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct 684 CTTGTTGACATGGGAATCTACTTCCAAGTGCAGGATGATTATCTGGATTGTTTTGCTGAT 743
Query 768 CCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCCTGGTTGGTA 827
|| ||||| |||||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 744 CCCGAGACGCTTGGCAAGATAGGAACGGATATAGAAGATTTCAAATGCTCGTGGTTGGTG 803
Query 828 GTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAGAACTATGGT 887
|| |||||||| ||||||||||| |||||||||||||||||| |||| ||||| ||||||
Sbjct 804 GTCAAGGCATTAGAACGCTGCAGCGAAGAACAAACTAAGATATTATATGAGAATTATGGT 863
Query 888 AAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAG 947
|||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||| |||
Sbjct 864 AAAGCCGACCCATCAAACGTTGCTAAAGTGAAGGATCTCTACAAAGAGCTTGATCTTGAG 923
Query 948 GGAGCGTTCATGGAATATGAGAAGGAAA-GCTATGAGAAGCTGACAA-AGTTGATCGAAG 1005
|||| ||||||||| ||||||| | ||| ||||||||||||||| ||| ||| || |
Sbjct 924 GGAGTGTTCATGGAGTATGAGA-GCAAAAGCTATGAGAAGCTGATGGGAGT-GATTGAGG 981
Query 1006 CTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGA 1065
|||| | |||| |||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 982 GTCACAAAAGTACAGCAATCCAAGCAGTGCTAAAATCCTTCTTGGCTAAGATCTACAAGA 1041
Query 1066 GGCAGAAGTAG 1076
|||||||||||
Sbjct 1042 GGCAGAAGTAG 1052
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48301735839
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5