BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17200.1 Length=1146 Score E Sequences producing significant alignments: (Bits) Value Ahg946515 jgi|Araly1|946515|scaffold_702744.1 453 1e-126 Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 265 6e-70 Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 102 5e-21 Ahg929603 jgi|Araly1|929603|scaffold_302060.1 71.3 1e-11 Ahg930261 jgi|Araly1|930261|scaffold_302718.1 69.4 5e-11 Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 69.4 5e-11 Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 69.4 5e-11 > Ahg946515 jgi|Araly1|946515|scaffold_702744.1 Length=467 Score = 453 bits (245), Expect = 1e-126 Identities = 296/320 (93%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 141 AAGGAAGCAGTTTATGGGATTCACGATGATGGATTCTAGGGTTTGTTCAATGAAGTTTGA 200 |||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 14 AAGGAAGCAGTTCATGGGATTCATGATGATGGATTCTAGGGTTTGTTCAATGAATTTTGA 73 Query 201 TCTCCAAGGAATCCGA-AACAACGAACATGACTTTGTTGATCCATGTATAAAGCAAATTG 259 |||||||||||||| | ||||||||| | ||||||||||||||||||||||||||||||| Sbjct 74 TCTCCAAGGAATCC-ATAACAACGAAGAAGACTTTGTTGATCCATGTATAAAGCAAATTG 132 Query 260 CTAAACTTGATCAAATCGAGGTATCTAAAGTCCTTCAATGCGATGGTTTGTTGTTATGCG 319 |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 133 CTAAACTTGATCAAATCGAGATATCTAAAGTCCTTCAATGCGATGGTTTCTTGTTATGCG 192 Query 320 TCGGTAAGGACAACTCGAGGCTTCTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 379 || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 193 TCATTAAGGACAACTCGAGGCTTTTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 252 Query 380 TCAAACCAAGAAAAAGGTTTA-ACAAACTCGA-ATGGTACGCTCTCGGATATGACAATAA 437 ||||||||||||| || ||| ||| | | || | |||| ||||||||||| |||| ||| Sbjct 253 TCAAACCAAGAAACAG-TTTCCACAGATTAGACA-GGTATGCTCTCGGATACGACAGTAA 310 Query 438 CCACAACTACAAAATCTTGA 457 |||||||||||||||||||| Sbjct 311 CCACAACTACAAAATCTTGA 330 > Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 Length=2011 Score = 265 bits (143), Expect = 6e-70 Identities = 630/849 (74%), Gaps = 98/849 (12%) Strand=Plus/Plus Query 1 ATGACGACAATGTCTGATCTTTCACCAGATTTGGTAGGGGAGATTCTCACTAGGGTTCCG 60 ||||||||||| || ||||| ||| |||||||||||| |||||||| || ||||||| Sbjct 26 ATGACGACAATTTCCGATCTATCAGAAGATTTGGTAGGTGAGATTCTTTCTTGGGTTCC- 84 Query 61 A-TGACATCT-TTGATTTCAGTACGGTGTACTTGCAAAATGTGGAACGCTTTATCCAAAG 118 | | |||||| || | |||| || | |||||| |||| |||||| |||||||| ||| Sbjct 85 ATTTACATCTCTT-ACCGCAGTGCGATCTACTTGTAAAAAGTGGAATGCTTTATCGAAA- 142 Query 119 AA-GGTAT-TTT-CT---TTAA-AGCAGCAAGGAAGCAGTTTATGGGA-TTCA-CGATGA 169 || || ||| | || |||| ||||||| |||||| | ||| |||| | || Sbjct 143 AATCACATCTTTGGTAGAAAAACAGCATCAAGGAATCAGTTTCT-GGAGTTCATGGTTG- 200 Query 170 TGGATTCTAGGGTTTGTTCAATGAAG-TTTGATCTCCAAGGAATCCG-AA--ACAACGAA 225 ||||||||||||||||| || || || ||||||||||||||||| || || ||| | Sbjct 201 CAGATTCTAGGGTTTGTTCTTTG-AGATTAGATCTCCAAGGAATCCGTAACGACGACGTA 259 Query 226 CATGACTTTGTTGATCCATGTATAAAGC--A-AA-T-T-GCTAA-ACT--TGATCAAATC 276 | |||| |||||| ||| ||| |||| | || | | |||| | | ||||||| || Sbjct 260 GAAGACTACGTTGATTCATCTATGAAGCAGATAACTATACCTAATAATGATGATCAAGTC 319 Query 277 GAGGTATCTAAAGTCCT-TCAATGCGATGGTTTGTTGTTATGCGTCGGTAAGGACAACTC 335 ||| ||||| |||| || ||| |||||||| || ||||||||| ||| || || ||||| Sbjct 320 GAGATATCTCAAGT-CTATCACTGCGATGGCTTATTGTTATGCATCGCCAAAGATAACTC 378 Query 336 GAGGCTTC-TAGTGTGGAATCCTTATTTAGGGCAAA-CAAGGTTTATCAAACCAAGAAA- 392 ||||| || | ||||||||||| ||| ||||||||| ||| | ||| |||||||||| Sbjct 379 GAGGC-TCTTTGTGTGGAATCCGTATCTAGGGCAAACCAA-ATGGATCCAACCAAGAAAC 436 Query 393 AAGGTTTAACAAACT-CGA-ATGGTACGCTCTCGGATATGACAATAACCACAACTACAAA 450 || ||| ||||| | || | ||| ||||||||||| ||||| |||| ||| ||||| Sbjct 437 AA-GTTCCACAAA-TATGACA-GGTTTGCTCTCGGATACGACAACAACCGTAACCACAAA 493 Query 451 ATCTTGATG-AAC--TATGAT--ACAGGGC-AC-----CTTTTTG--G---TTAC---GA 491 ||||||| | | |||||| | || | || | | | | | | || || Sbjct 494 ATCTTGAGGTTTCTTTATGATGAAGAGAACAACGAAAGC-TGTCGAAGAACTCACATTGA 552 Query 492 AATCTACGACTTT-AGCTCTGATTCATGGAGGGTTCTTGATGTCAGTCCCGACTGCCATA 550 | ||||| ||| ||||||||||||||||||||||||||||||| ||| ||||| ||| Sbjct 553 TGTATACGA-TTTCAGCTCTGATTCATGGAGGGTTCTTGATGTCAATCCTGACTGGGATA 611 Query 551 T-A--CCGTTTCATCAACAGAG-CGTGTCTTTGAATGGAAACACTTATTTTCTT-GCTCA 605 | | || ||| ||| ||| | |||||||||||| ||||| ||||| || ||| | ||| Sbjct 612 TTATACCTTTTTATCG-CAGCGGCGTGTCTTTGAAGGGAAATACTTACTT-CTTCGGTCA 669 Query 606 AGAGAAGATAATTGTGGAAGGAGAAGAAGAAGAAGTAGTAGATGAGATTGAAAAGTT-TT 664 ||| | | ||| ||| || | | | | ||| | | | ||||||| || || Sbjct 670 AGA-A-G-TAACAC---AAGC-GA-GTA-A-G--GTAACA-A--ACATTGAAAC-TTGTT 713 Query 665 TACTCTGTTTTGATTTTACTACAGAGAGGTTTGGACCGCGTCTT-CCTCTGCCATTTCAC 723 ||||||||||||||||||| |||||||| |||||||| ||| || ||||||| |||||| Sbjct 714 TACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCACGT-TTGCCTCTGCTGTTTCAC 772 Query 724 --TC--TGA--T-GTTTTGGAAACTGTGGCTATATCTTGTGTTAGAGATGATCAGCTTGC 776 || || | |||||| |||||||| || ||||||| ||||||||||| |||| || Sbjct 773 CCTCCATGTCCTAGTTTTG-AAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGC 831 Query 777 GGTGTTATA 785 |||||||| Sbjct 832 TGTGTTATA 840 > Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 Length=1263 Score = 102 bits (55), Expect = 5e-21 Identities = 363/502 (72%), Gaps = 59/502 (12%) Strand=Plus/Plus Query 491 AAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGTCAGTCCCGACTGCCA-T 549 |||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||| || | Sbjct 591 AAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGACTGGCACT 650 Query 550 ATACCGTTTCAT-CAACA-GAGCGTGTCTTTGAATGGAAACACTTATTT-TCTTGCTCAA 606 || | | || || || | |||||||| | || ||||| | || | | ||||| || Sbjct 651 -TAAGGACT-ATTCACCATG-GCGTGTCTCTCAAGGGAAATGCGTACTGGT-TTGCTGAA 706 Query 607 GAGAAGATAATTGTGGAAGGAGAAGAAGAAGAAGTAGTA-GATGAGATTGAAAAGTTT-T 664 |||||| || || | || | ||| ||| | ||| | ||| || ||| | Sbjct 707 GAGAAG-TA-TTCCG-AA--ACCAGA-GAA-A--TAG-ACGAT----TT------TTTCT 746 Query 665 TACTCTGTTTTGATTTTACTACAGAGAGGTTTGGACCGCGTCTT-CCTCTGCCATTTCAC 723 || ||||||||||||| || | ||||| ||||| |||| | || ||||| || ||| | Sbjct 747 TAGTCTGTTTTGATTTCACAAGAGAGACATTTGGGCCGCCT-TTGCCTCTTCCGTTTGAG 805 Query 724 TCTGATGTTT-TGGAA-A--CTGTG-GCTATATCTTGTGTTAGAGATGATCAGCTTGCGG 778 | || ||||| || || | || || | | ||||| |||||||||| || |||||||| | Sbjct 806 TTTGCTGTTTCTG-AAGATGCTATGAG-TGTATCTAGTGTTAGAGAAGAGCAGCTTGCTG 863 Query 779 TGTTATATCAGCGGTTTGAAACAT----G--GGAGATTTGGGTAACCACTAAGATCGATC 832 | |||||||||| || || |||| | |||||| ||||| || ||||||| || | Sbjct 864 TTTTATATCAGCCGTGGGATACATTAAAGATGGAGATCTGGGTTACGTCTAAGATTGAGC 923 Query 833 CCA-CTGCGGTGTCCTGGA---GCATG-T-TT-TTGTCAGTG-GATATGGAACCACCCAC 884 ||| | ||||| ||||||| ||| | | || || |||||| | | | ||| || || Sbjct 924 CCAAC-GCGGTCTCCTGGAACAGCAAGGTGTTCTTATCAGTGAGTT-TAAAACAACTCAT 981 Query 885 TGGTTGTCAGTT-CGATGATGAAGCTGGG-AGCTTCTTTATTGACGAAGAGAACAAAGTC 942 ||| |||||| | || | | |||| || ||||| |||||||| ||||| |||||| Sbjct 982 TGGCCCTCAGTTTC-ATTTTTATT-TGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTC 1039 Query 943 GCTGTATTTTTTAATTCAGACT 964 ||||| ||||| || ||||| Sbjct 1040 GCTGTGGTTTTTGATAAAGACT 1061 > Ahg929603 jgi|Araly1|929603|scaffold_302060.1 Length=932 Score = 71.3 bits (38), Expect = 1e-11 Identities = 38/38 (100%), Gaps = 0/38 (0%) Strand=Plus/Plus Query 490 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCT 527 |||||||||||||||||||||||||||||||||||||| Sbjct 364 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCT 401 > Ahg930261 jgi|Araly1|930261|scaffold_302718.1 Length=1043 Score = 69.4 bits (37), Expect = 5e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 490 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532 ||||| ||||| ||||||||||||||||||||||||||||||| Sbjct 549 GAAATATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATG 591 > Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 Length=1092 Score = 69.4 bits (37), Expect = 5e-11 Identities = 41/43 (95%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 490 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532 |||||||| || ||||||||||||||||||||||||||||||| Sbjct 466 GAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATG 508 > Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 Length=1112 Score = 69.4 bits (37), Expect = 5e-11 Identities = 39/40 (98%), Gaps = 0/40 (0%) Strand=Plus/Plus Query 493 ATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532 ||||| |||||||||||||||||||||||||||||||||| Sbjct 466 ATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 505 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42735789957 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5