BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17200.1
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946515 jgi|Araly1|946515|scaffold_702744.1 453 1e-126
Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1 265 6e-70
Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1 102 5e-21
Ahg929603 jgi|Araly1|929603|scaffold_302060.1 71.3 1e-11
Ahg930261 jgi|Araly1|930261|scaffold_302718.1 69.4 5e-11
Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703 69.4 5e-11
Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1 69.4 5e-11
> Ahg946515 jgi|Araly1|946515|scaffold_702744.1
Length=467
Score = 453 bits (245), Expect = 1e-126
Identities = 296/320 (93%), Gaps = 6/320 (2%)
Strand=Plus/Plus
Query 141 AAGGAAGCAGTTTATGGGATTCACGATGATGGATTCTAGGGTTTGTTCAATGAAGTTTGA 200
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct 14 AAGGAAGCAGTTCATGGGATTCATGATGATGGATTCTAGGGTTTGTTCAATGAATTTTGA 73
Query 201 TCTCCAAGGAATCCGA-AACAACGAACATGACTTTGTTGATCCATGTATAAAGCAAATTG 259
|||||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||
Sbjct 74 TCTCCAAGGAATCC-ATAACAACGAAGAAGACTTTGTTGATCCATGTATAAAGCAAATTG 132
Query 260 CTAAACTTGATCAAATCGAGGTATCTAAAGTCCTTCAATGCGATGGTTTGTTGTTATGCG 319
|||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 133 CTAAACTTGATCAAATCGAGATATCTAAAGTCCTTCAATGCGATGGTTTCTTGTTATGCG 192
Query 320 TCGGTAAGGACAACTCGAGGCTTCTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 379
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 193 TCATTAAGGACAACTCGAGGCTTTTAGTGTGGAATCCTTATTTAGGGCAAACAAGGTTTA 252
Query 380 TCAAACCAAGAAAAAGGTTTA-ACAAACTCGA-ATGGTACGCTCTCGGATATGACAATAA 437
||||||||||||| || ||| ||| | | || | |||| ||||||||||| |||| |||
Sbjct 253 TCAAACCAAGAAACAG-TTTCCACAGATTAGACA-GGTATGCTCTCGGATACGACAGTAA 310
Query 438 CCACAACTACAAAATCTTGA 457
||||||||||||||||||||
Sbjct 311 CCACAACTACAAAATCTTGA 330
> Ahg485308 jgi|Araly1|485308|fgenesh2_kg.5__1300__AT3G49510.1
Length=2011
Score = 265 bits (143), Expect = 6e-70
Identities = 630/849 (74%), Gaps = 98/849 (12%)
Strand=Plus/Plus
Query 1 ATGACGACAATGTCTGATCTTTCACCAGATTTGGTAGGGGAGATTCTCACTAGGGTTCCG 60
||||||||||| || ||||| ||| |||||||||||| |||||||| || |||||||
Sbjct 26 ATGACGACAATTTCCGATCTATCAGAAGATTTGGTAGGTGAGATTCTTTCTTGGGTTCC- 84
Query 61 A-TGACATCT-TTGATTTCAGTACGGTGTACTTGCAAAATGTGGAACGCTTTATCCAAAG 118
| | |||||| || | |||| || | |||||| |||| |||||| |||||||| |||
Sbjct 85 ATTTACATCTCTT-ACCGCAGTGCGATCTACTTGTAAAAAGTGGAATGCTTTATCGAAA- 142
Query 119 AA-GGTAT-TTT-CT---TTAA-AGCAGCAAGGAAGCAGTTTATGGGA-TTCA-CGATGA 169
|| || ||| | || |||| ||||||| |||||| | ||| |||| | ||
Sbjct 143 AATCACATCTTTGGTAGAAAAACAGCATCAAGGAATCAGTTTCT-GGAGTTCATGGTTG- 200
Query 170 TGGATTCTAGGGTTTGTTCAATGAAG-TTTGATCTCCAAGGAATCCG-AA--ACAACGAA 225
||||||||||||||||| || || || ||||||||||||||||| || || ||| |
Sbjct 201 CAGATTCTAGGGTTTGTTCTTTG-AGATTAGATCTCCAAGGAATCCGTAACGACGACGTA 259
Query 226 CATGACTTTGTTGATCCATGTATAAAGC--A-AA-T-T-GCTAA-ACT--TGATCAAATC 276
| |||| |||||| ||| ||| |||| | || | | |||| | | ||||||| ||
Sbjct 260 GAAGACTACGTTGATTCATCTATGAAGCAGATAACTATACCTAATAATGATGATCAAGTC 319
Query 277 GAGGTATCTAAAGTCCT-TCAATGCGATGGTTTGTTGTTATGCGTCGGTAAGGACAACTC 335
||| ||||| |||| || ||| |||||||| || ||||||||| ||| || || |||||
Sbjct 320 GAGATATCTCAAGT-CTATCACTGCGATGGCTTATTGTTATGCATCGCCAAAGATAACTC 378
Query 336 GAGGCTTC-TAGTGTGGAATCCTTATTTAGGGCAAA-CAAGGTTTATCAAACCAAGAAA- 392
||||| || | ||||||||||| ||| ||||||||| ||| | ||| ||||||||||
Sbjct 379 GAGGC-TCTTTGTGTGGAATCCGTATCTAGGGCAAACCAA-ATGGATCCAACCAAGAAAC 436
Query 393 AAGGTTTAACAAACT-CGA-ATGGTACGCTCTCGGATATGACAATAACCACAACTACAAA 450
|| ||| ||||| | || | ||| ||||||||||| ||||| |||| ||| |||||
Sbjct 437 AA-GTTCCACAAA-TATGACA-GGTTTGCTCTCGGATACGACAACAACCGTAACCACAAA 493
Query 451 ATCTTGATG-AAC--TATGAT--ACAGGGC-AC-----CTTTTTG--G---TTAC---GA 491
||||||| | | |||||| | || | || | | | | | | || ||
Sbjct 494 ATCTTGAGGTTTCTTTATGATGAAGAGAACAACGAAAGC-TGTCGAAGAACTCACATTGA 552
Query 492 AATCTACGACTTT-AGCTCTGATTCATGGAGGGTTCTTGATGTCAGTCCCGACTGCCATA 550
| ||||| ||| ||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 553 TGTATACGA-TTTCAGCTCTGATTCATGGAGGGTTCTTGATGTCAATCCTGACTGGGATA 611
Query 551 T-A--CCGTTTCATCAACAGAG-CGTGTCTTTGAATGGAAACACTTATTTTCTT-GCTCA 605
| | || ||| ||| ||| | |||||||||||| ||||| ||||| || ||| | |||
Sbjct 612 TTATACCTTTTTATCG-CAGCGGCGTGTCTTTGAAGGGAAATACTTACTT-CTTCGGTCA 669
Query 606 AGAGAAGATAATTGTGGAAGGAGAAGAAGAAGAAGTAGTAGATGAGATTGAAAAGTT-TT 664
||| | | ||| ||| || | | | | ||| | | | ||||||| || ||
Sbjct 670 AGA-A-G-TAACAC---AAGC-GA-GTA-A-G--GTAACA-A--ACATTGAAAC-TTGTT 713
Query 665 TACTCTGTTTTGATTTTACTACAGAGAGGTTTGGACCGCGTCTT-CCTCTGCCATTTCAC 723
||||||||||||||||||| |||||||| |||||||| ||| || ||||||| ||||||
Sbjct 714 TACTCTGTTTTGATTTTACAACAGAGAGATTTGGACCACGT-TTGCCTCTGCTGTTTCAC 772
Query 724 --TC--TGA--T-GTTTTGGAAACTGTGGCTATATCTTGTGTTAGAGATGATCAGCTTGC 776
|| || | |||||| |||||||| || ||||||| ||||||||||| |||| ||
Sbjct 773 CCTCCATGTCCTAGTTTTG-AAACTGTGACTCTATCTTGGGTTAGAGATGAGAAGCTCGC 831
Query 777 GGTGTTATA 785
||||||||
Sbjct 832 TGTGTTATA 840
> Ahg479258 jgi|Araly1|479258|fgenesh2_kg.3__1959__AT3G19470.1
Length=1263
Score = 102 bits (55), Expect = 5e-21
Identities = 363/502 (72%), Gaps = 59/502 (12%)
Strand=Plus/Plus
Query 491 AAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATGTCAGTCCCGACTGCCA-T 549
|||||||||| |||| ||||||||||||||||||||||||||||| ||| ||||| || |
Sbjct 591 AAATCTACGATTTTAACTCTGATTCATGGAGGGTTCTTGATGTCACTCCAGACTGGCACT 650
Query 550 ATACCGTTTCAT-CAACA-GAGCGTGTCTTTGAATGGAAACACTTATTT-TCTTGCTCAA 606
|| | | || || || | |||||||| | || ||||| | || | | ||||| ||
Sbjct 651 -TAAGGACT-ATTCACCATG-GCGTGTCTCTCAAGGGAAATGCGTACTGGT-TTGCTGAA 706
Query 607 GAGAAGATAATTGTGGAAGGAGAAGAAGAAGAAGTAGTA-GATGAGATTGAAAAGTTT-T 664
|||||| || || | || | ||| ||| | ||| | ||| || ||| |
Sbjct 707 GAGAAG-TA-TTCCG-AA--ACCAGA-GAA-A--TAG-ACGAT----TT------TTTCT 746
Query 665 TACTCTGTTTTGATTTTACTACAGAGAGGTTTGGACCGCGTCTT-CCTCTGCCATTTCAC 723
|| ||||||||||||| || | ||||| ||||| |||| | || ||||| || ||| |
Sbjct 747 TAGTCTGTTTTGATTTCACAAGAGAGACATTTGGGCCGCCT-TTGCCTCTTCCGTTTGAG 805
Query 724 TCTGATGTTT-TGGAA-A--CTGTG-GCTATATCTTGTGTTAGAGATGATCAGCTTGCGG 778
| || ||||| || || | || || | | ||||| |||||||||| || |||||||| |
Sbjct 806 TTTGCTGTTTCTG-AAGATGCTATGAG-TGTATCTAGTGTTAGAGAAGAGCAGCTTGCTG 863
Query 779 TGTTATATCAGCGGTTTGAAACAT----G--GGAGATTTGGGTAACCACTAAGATCGATC 832
| |||||||||| || || |||| | |||||| ||||| || ||||||| || |
Sbjct 864 TTTTATATCAGCCGTGGGATACATTAAAGATGGAGATCTGGGTTACGTCTAAGATTGAGC 923
Query 833 CCA-CTGCGGTGTCCTGGA---GCATG-T-TT-TTGTCAGTG-GATATGGAACCACCCAC 884
||| | ||||| ||||||| ||| | | || || |||||| | | | ||| || ||
Sbjct 924 CCAAC-GCGGTCTCCTGGAACAGCAAGGTGTTCTTATCAGTGAGTT-TAAAACAACTCAT 981
Query 885 TGGTTGTCAGTT-CGATGATGAAGCTGGG-AGCTTCTTTATTGACGAAGAGAACAAAGTC 942
||| |||||| | || | | |||| || ||||| |||||||| ||||| ||||||
Sbjct 982 TGGCCCTCAGTTTC-ATTTTTATT-TGGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTC 1039
Query 943 GCTGTATTTTTTAATTCAGACT 964
||||| ||||| || |||||
Sbjct 1040 GCTGTGGTTTTTGATAAAGACT 1061
> Ahg929603 jgi|Araly1|929603|scaffold_302060.1
Length=932
Score = 71.3 bits (38), Expect = 1e-11
Identities = 38/38 (100%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 490 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCT 527
||||||||||||||||||||||||||||||||||||||
Sbjct 364 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCT 401
> Ahg930261 jgi|Araly1|930261|scaffold_302718.1
Length=1043
Score = 69.4 bits (37), Expect = 5e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 490 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532
||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 549 GAAATATACGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATG 591
> Ahg906575 jgi|Araly1|906575|Al_scaffold_0003_3703
Length=1092
Score = 69.4 bits (37), Expect = 5e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 490 GAAATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532
|||||||| || |||||||||||||||||||||||||||||||
Sbjct 466 GAAATCTATGAGTTTAGCTCTGATTCATGGAGGGTTCTTGATG 508
> Ahg479230 jgi|Araly1|479230|fgenesh2_kg.3__1931__AT3G17540.1
Length=1112
Score = 69.4 bits (37), Expect = 5e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Plus
Query 493 ATCTACGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 532
||||| ||||||||||||||||||||||||||||||||||
Sbjct 466 ATCTATGACTTTAGCTCTGATTCATGGAGGGTTCTTGATG 505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42735789957
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5