BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17210.1
Length=1584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493156 jgi|Araly1|493156|fgenesh2_kg.7__2589__AT4G17210.1 2412 0.0
> Ahg493156 jgi|Araly1|493156|fgenesh2_kg.7__2589__AT4G17210.1
Length=1581
Score = 2412 bits (1306), Expect = 0.0
Identities = 1494/1586 (94%), Gaps = 7/1586 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAGATCAGAACGGATGCTCCGGTGATGCCTCCGGAGACTCCTCCTCGGAGCAGT 60
|||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1 ATGGCGAAGATCCGAACGGATGCTCCGGTGATACCTCCGGAGACTCCTCCTAGGAGCAGT 60
Query 61 GAGGTGGGAGAGATTGACACCCGCGCTCCCTTCCAATCCGTTAGAGACGCCCTTAGTTTA 120
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GAGGTGGGAGAGATTGACACGCGCGCTCCCTTCCAATCCGTTAGAGACGCCGTTAGTTTA 120
Query 121 TTCCGTCAAGTTAGCTTTTCCAAGAAGCAACCAcctcgtc-tctcctcctcctcctcttc 179
||||||||||||||||||||||||||||||||| | || | ||| |||||||||||||||
Sbjct 121 TTCCGTCAAGTTAGCTTTTCCAAGAAGCAACCA-C-CG-CATCT-CTCCTCCTCCTCTTC 176
Query 180 tcagtctcAGGAC-ACAACAACGGATGTGTCGGATAAGGAGATGCAACTTCTGTTAGCCG 238
||||||||| | | |||| |||||||||||| ||||||||||||||||||||||| ||||
Sbjct 177 TCAGTCTCA-GTCTACAAAAACGGATGTGTCCGATAAGGAGATGCAACTTCTGTTGGCCG 235
Query 239 AACAAGAAATGGATAGAGTCAAGATATGTCTTGATGGCTCTGTCGCAGCTAAAGCACAAG 298
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 236 AACAAGAAATGGATAGAGTCAAGCTGTGTCTTGATGGCTCTGTCGCAGCTAAAGCACAAG 295
Query 299 CTCTCTCTGATCTCGACTCTGCTCAACGAAAGGCTGCTGATTTAAGGGTTAAACTAGAAT 358
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 296 CTCTCTCTGATCTCGACTCTGCTCAACGAAAGGCCGCTGATTTAAGGGTTAAACTAGAAT 355
Query 359 CCATCAAACATTCAAGGAAATGTGCTATCTCTACCAAACACACCATGAATCAACGGTTAG 418
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 356 CCATCAAACATTCCAGGAAATGTGCTATCTCTACCAAACACACCATGAATCAACGTTTAG 415
Query 419 AACAACTTCAATCTGAAAACCAAGAAACAGAGAGCACAAGAGAGGATTACATTTTGATTA 478
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||
Sbjct 416 AACAACTTCAATCTGAAAACCAAGAAACAGAGAGCGCAAGAGAAGATTACATTTTAATTA 475
Query 479 CCGCGGAGCTGTTCATGGCGAAATACGAGCTCGCGGAATTAAAACAACAGTTTAACCTCT 538
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 476 CCGCGGAGCTGTTCATGGCGAAAAACGAGCTCGCGGAATTGAAACAACAGTTTAACCTCT 535
Query 539 CCGTGGAAGAGAGACTAGCTGAACTTCAGAGGGCAGAGGAAGCAGAGTGTGCGTCTATGG 598
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 CCGTGGAAGAAAGGCTAGCTGAACTTCAAAGGGCAGAGGAAGCAGAGTGTGCGTCTATGG 595
Query 599 TTAACTCCAACAAGATCAAAGACATGTCGCATGACATAGCGGAAATGCGTGATGCTGCTG 658
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 596 TTAACTCCAACAAGATCAAAGACATGTCACATGAGATAGCGGAAATGCGTGATGCTGCTG 655
Query 659 AGCGACTTAATTCTGATGCTGCAAGGAAAAAAGAGGAAGAGGAACAGATAAAGGAAGAGA 718
|||| || || |||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 656 AGCGGCTGAAGTCTGATGCTGTTAGGAAAAAGGAGGAAGAGGAAAAGATAAAGGAAGAGA 715
Query 719 GTATTGCCTTGAGAGAAACTTACGTGTGTAAGAAGCTAGAAGCTAAGCAAAGGCTGGAGG 778
|||||||| ||||||||||||||||| |||||| | |||||||||| ||||||||||||
Sbjct 716 GTATTGCCGCGAGAGAAACTTACGTGTCTAAGAAACAAGAAGCTAAGAAAAGGCTGGAGG 775
Query 779 ATCTCAAGCGAGATTGTGACCCTGAGCTAAAGAAAGATATTGAGGAGTTAATGGAGATAT 838
|| | |||| |||||||||||||||||||| ||||||||| |||||| || ||| ||||
Sbjct 776 ATGTGAAGCAAGATTGTGACCCTGAGCTAAGGAAAGATATCGAGGAGCTAGCGGATATAT 835
Query 839 CTACCGAAAACGAGAGGTTACAGGAGGAGATTAAACTTTCTGGCGAGCTCAAAGAGGCAA 898
|| | |||||||||||||||||||||||||||||||| || | || ||||||||||| |
Sbjct 836 CTGCGGAAAACGAGAGGTTACAGGAGGAGATTAAACTAGCTCGTGAACTCAAAGAGGCTA 895
Query 899 AGAGTGCGATGCAAGAAATTTATGATGAAGAAAGTTCATACAAAAGCTTGGTGGGTTCAC 958
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 896 AGAGTGCGATGCAAGAAATTTATGATGAAGAAAGCTCATACAAAAGCTTGGTGGGCTCAC 955
Query 959 TCACTGTGGAATTAGATGGAGTGCagagagaaaacagagaattgaagggaaaggagaagg 1018
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 956 TCACTGTGGAATTGGATGGAGTGCAGAGAGAGAACAGAGAATTGAAGGGAAAAGAGAAGG 1015
Query 1019 agagacaagaagctgaagaaggagaatgggtagaagCGAGTCGTAAAGTTGATGAAATCA 1078
|||||||| ||| |||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 1016 AGAGACAAAAAGTTGAAGAAGGAGAATGGGTAGAAGCGAGTCGGAAAGTGGACGAAATCA 1075
Query 1079 TGCGTGAAGCAGAGAAAACAAGAAAAGAAGCGGAAGAGATGAGGATGAACGTGGATGAAC 1138
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1076 TGAGTGAAGCAGAGAAAACAAGAAAAGAAGCGGAAGAGATGAGGATGCACGTGGATGAAC 1135
Query 1139 TCAGGAGAGAAGCAGCAGCAAAACATATGGTAATGGGTGAAGCAGTGAAACAGCTCGAGA 1198
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1136 TCAGGAGAGAAGCAGCAGCAACACATATGGTAATGGGTGAAGCAGTGAAACAGCTCGAGA 1195
Query 1199 TAGTTGGAAGAGCGGTGGAGAAAGCGAAAACCGCAGAGAAAAGAGCTGTGGAAGACATGA 1258
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 TAGTTGGAAGAGCGGTGGAGAAAGCGAAAACCGCGGAGAAAAGAGCTGTGGAAGACATGA 1255
Query 1259 AAGTCCTTACTGAGAAGAAAGAGAGTCTAACACATGATGAGCCTGACAAGAAGATTAGAA 1318
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 AAGTTCTTACTGAGAAGAAAGAGAGTCTAACACATGATGAGCCTGATAAGAAGATTAGAA 1315
Query 1319 TATCACTGAAAGAGTACGAAGAATTGAGAGGAAAGCATGAAGAGTCAGAGAGAATGGTAC 1378
||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1316 TATCATTGAAAGAGTACGAAGAGTTGAGAGGAAAGCATGAAGAGTCAGAGAGAATGGTTC 1375
Query 1379 AGTTTAAAGCGAAAACGGTTGCGGCTCAGCTGGAAGAGATCAATGAGAGCAGAATAGAAG 1438
|||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||
Sbjct 1376 AGTTTAAAGCGAAAACGGTTGCTGCTCAACTCGAAGAGATCAATGAGAGCAGAATAGAAG 1435
Query 1439 GGGAAAGAAAGTTGGAGGAGAAGATTAAAGAGATGGAGGAGTTAAAAGCTGCGATTGATG 1498
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1436 GGGAGAGAAAGTTGGAGGAAAAGATTAAAGAGATGGAGGAGTTAAAAGCGGCGATTGATG 1495
Query 1499 GCGCGTTGCGAAAAGCAGAGATTGCAGAGGAAGCACACAGTATTGTTGATGCTGAACTAA 1558
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 1496 GCGCGTTGAGAAAAGCAGAGATTGCAGAGGAAGCACATTCTATTGTCGATGCTGAACTAA 1555
Query 1559 GAAAATGGAAACCACAAGACTTGTAG 1584
||||||||||||| ||||||||||||
Sbjct 1556 GAAAATGGAAACCGCAAGACTTGTAG 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59344601710
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5