BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17215.1
Length=652
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493155 jgi|Araly1|493155|fgenesh2_kg.7__2588__AT4G17215.1 935 0.0
> Ahg493155 jgi|Araly1|493155|fgenesh2_kg.7__2588__AT4G17215.1
Length=621
Score = 935 bits (506), Expect = 0.0
Identities = 585/623 (94%), Gaps = 6/623 (1%)
Strand=Plus/Plus
Query 32 ACCTTGAAGATTAAAGATGAGGTTCTTGTTGATGAGCATGACGTTGGTATTAATTGTGAC 91
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1 ACCTTGAAGATTAAAGATGAGGTTCTTGTTGATGAGCATGACTTTGGTATTAATGGTGAC 60
Query 92 GTTTGGGGAAGCATTTAGTGATAGATGGAGCAGAGATGAGATGGTGGAGATGGCTGGCTA 151
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTTTGGGGAAGCAGTTAGGGATAGATGGAGCAGAGATGAGATGGTGGAGATGGCTGGCTA 120
Query 152 CGGCGAACAAAAActctcctctgttcttctcaccgcctctcttctctcttcctcctcctc 211
||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 121 CGGCGAAGAAAAACTCTCCTCTGTTCTTCTCACCGCCTCTCTTCTCTCTTCCTCTTCCTC 180
Query 212 cCCTATTCATGGAGCTACTATTGGCTTCAAGTGCCATACTGGACATAGGAGGAGATCTAA 271
|||||||||||| ||||| |||||| |||||||||||| |||| ||||||| ||||||||
Sbjct 181 CCCTATTCATGGTGCTACCATTGGCATCAAGTGCCATATTGGATATAGGAGAAGATCTAA 240
Query 272 ATGGATCAAAGCTGTGACAAATGAGTTGGGGCAATTCGTCATCGATCTTCCTTCTCACCT 331
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGGATCAAAGCTGTTACAAATGAGTTGGGGCAATTCGTCATCGATCTTCCTTCTCACCT 300
Query 332 CCACGCGATTCCTGACTTAGACAAGGCTTGTATCATTAAAACACTCTCTGTCCCTAAACC 391
|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||
Sbjct 301 CCACGCGATTCCTGACTTGGACAAGGCTTGTATCATTAAACCACTCTCTGTTCCTAAACC 360
Query 392 GTATCGATGCTCTTCCAAGATTCACAGAGGTATTCAACTCCTCTCCTCTTCCAACGGCTC 451
||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 361 ATATCGATGCTCATCCAAGATTCATAGAGGAATTCAACTCCTCTCCTCTTCTAACGGCTC 420
Query 452 TCGTGTCTATACAGCTGGAAATATCACCTTACAAGAGAGCACCATGTAAAA-GAGACTGT 510
|||||||| ||||| || || |||||||||||||||||||||||| |||| |||| |||
Sbjct 421 CCGTGTCTACACAGCCGGCAACATCACCTTACAAGAGAGCACCATGCAAAAAGAGATTGT 480
Query 511 AAATTAATCTTGCTAGGAAAGATCAGTCCTGACTTTATTTCTATATGGTTCCTTCTCACT 570
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 481 AAATTAATCTTGCTAGGAAAGATCAGTCATGACTTTATTTGTATATGGTTCCTTCTCACT 540
Query 571 TCTTGTGAGAAAGAGAGATA-GTCTTTGTAAATCTTGTTCTTCATGCTCTTCTTGTATAT 629
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 541 TCTTGTGAGAAAGAGAGACAAGTCTTTGTAAATCTTGTTGTTCATGCTCTTCTTGTATAT 600
Query 630 AATAAAATTT-ATGTTTT-CTTC 650
| |||||||| || |||| ||||
Sbjct 601 A-TAAAATTTTAT-TTTTGCTTC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23903068959
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5