BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17220.1 Length=1770 Score E Sequences producing significant alignments: (Bits) Value Ahg946510 jgi|Araly1|946510|scaffold_702739.1 2375 0.0 > Ahg946510 jgi|Araly1|946510|scaffold_702739.1 Length=1573 Score = 2375 bits (1286), Expect = 0.0 Identities = 1487/1584 (94%), Gaps = 13/1584 (1%) Strand=Plus/Plus Query 39 GGAGCCGTTGAGACTACAAAATGACTGCAGCAGAAAACCCTTTTGTATCTGACACCTCTT 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 GGAGCCGTTGAGACTACAAAATGACTGCAGAAGAAAACCCTTTTGTATCTGACACCTCTT 60 Query 99 CTCTGCAAAGCCAGCTTAAAGAAAAAGAGAAAGAGCTTTTGGCTGCTAAAGCTGAAGTTG 158 ||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| ||| Sbjct 61 CTCTGCAAAACCAGCTTATAGAAAAAGAGAAAGAGCTTTTGACTGCTAAAGCTGAAATTG 120 Query 159 AGGCTTTGAGAACAAATGAAGAGCTCAAAGACAGAGTCTTTAAGGAGCTTAGAGAAAACG 218 ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 121 AGGCTTTGAGAACAAATGAAGGGCACAAAGACAGAGCCTTTAAGGAGCTTAGAGAAAACG 180 Query 219 TGAGGAAGTTGGAGGAGAAACTTGGAGCCACCGAGAATCA-AGTTGACCAAAAGGAGTTG 277 ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| || Sbjct 181 TGAGGAAGTTGGAGGAGCAACTTGGAGCCACCGAGAAT-ATTGTTGACCAAAAGGAGGTG 239 Query 278 GAGAGGAAGAAGCTAGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 337 |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 GAGATGAAGAAGCTGGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 299 Query 338 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGACGATGACTCTCTACCCCTAGAATCC 397 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| Sbjct 300 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGATGATGACTCTCTTCCCCTTGAATCC 359 Query 398 ATCATAGCTCCTCTTGAATCTCAGATCAAGATTCACAAGCATGAGATTTCTGCACTTCAA 457 || ||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||| Sbjct 360 ATTATAGCTCCTCTTGAAGCTCAGATCAAGTTTCAAAAGCATGAGATTTCTGCACTTCAA 419 Query 458 GAGGACAAGAAAGCGTTGGAACGTCTAACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 517 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 420 GAGGACAAGAAAGCGTTGGAACGTCTGACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 479 Query 518 GAGAGAATCTTGAGAAGTGCCCTTGAACGTGCTTTGATTGTTGAAGAGGTCCAGAACCAT 577 ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct 480 GAGAGAATCTTGAGAAGTGCCCTTGAACGGGCTTTGATCGTTGAAGAGGTCCAGAACCAC 539 Query 578 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 637 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 599 Query 638 ATTAACCGCCAGAAAGTGTTGGAGATTGAGAAGCTCTCCCAAAGCATTGTAGAACTGGAG 697 || ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 600 ATCAACCGCCAGAAAGTGTTGGAGATCGAGAAGCTCTCCCAAAGCATTGTAGAATTGGAG 659 Query 698 GAAGCGATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 757 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 GAAGCAATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 719 Query 758 TCCCAGCTCAATGATGAGAAGAGAACCTTAGAGAGAGAGCTAGCCAGAGTCAAAGTGTCA 817 || ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| ||| Sbjct 720 TCACAGCTCAATGAAGAGAAGAGGACCTTGGAGAGAGAGCTAGCCAGAGTCAAAGTATCA 779 Query 818 GCAAGTAGAGTGGCACTTGCAGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 877 ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 780 GCAAGTAGAGTTGCCCTTGCCGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 839 Query 878 CCTGTAAAGCAATGGCTTGAAGAGAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 937 || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 840 CCCGTAAAGCAATGGCTTGAAGAAAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 899 Query 938 GATAAACTCGCTGTTTCCGAGAGAACCGCTAAGGCTGAGTCCCAGCTAAAGGAGAGGTTA 997 ||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 900 GATAAACTCTCTGTTTCCGAGAGAACCGCTAAGGCTGAATCTCAGCTAAAGGAGAGGTTG 959 Query 998 AAGCTTAGGCTGAAAACCATAGAAGATGGCTTGAAGGGCCCAAACACGTTTTTCGTCTCT 1057 ||||| ||||||||||||||||||||||| || |||||||||||||||| | |||||| Sbjct 960 AAGCTGAGGCTGAAAACCATAGAAGATGGTTTAAAGGGCCCAAACACGTGTAAAGTCTCT 1019 Query 1058 CCAACTACAAAGACTGAAAAATCTGGCAAGATTTTAGGATTCTTGACCAGTGGTGGTGGC 1117 ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct 1020 CCAACTACAAAGACTGAAAAACCTGGCAAGATTTTAGGATTCTTGACGAGTGGTGGTGGA 1079 Query 1118 TCAAAGAAAAGGTCTAGTTCTCAGCTAAGAGGCTCAGTTACAGGCAGAATCCATGCTATG 1177 |||||||||||||||| ||| || | |||| |||| |||||||||||||| || Sbjct 1080 TCAAAGAAAAGGTCTACTTC--AG----G---CTCAATTACTGGCAGAATCCATGCCCTG 1130 Query 1178 AATCAGCCAATTGACAGAGTTGGGGAAAGTGATGAAATGGAGAATTCAAAGATTACTGCA 1237 |||||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| || ||| Sbjct 1131 AATCAGCCGATTCACATAGTTGCAGAAAGTGATGAAAAGGAGAATTCAAAGATAACCGCA 1190 Query 1238 AACGGAT-TGACTGATCAACATGAAGAAGATAGCGAAAGGAAAACAGAGGAAGATGGAAA 1296 |||| || | |||||||| |||||||||||| || |||||||| ||||||||||| |||| Sbjct 1191 AACG-ATATAACTGATCAGCATGAAGAAGATGGCAAAAGGAAAGCAGAGGAAGATAGAAA 1249 Query 1297 TGTTTATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTGAT 1356 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1250 TGTAGATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTAAT 1309 Query 1357 TGCTTTAAGGAAGCTATGTGAGAGTAAAGAGGGTACTATAAATGCCAAAAATGAAGAAAT 1416 ||||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1310 TGCTTTAAGGAAGATTTGTGAGAGTAAAGAGGGTACTATTAATGCCAAAAATGAAGAAAT 1369 Query 1417 CAAGATGTTGTTGAAGAAGGTGGATGCTCTAACGAAAGCCATTGAAGTTGAGACAAAGAA 1476 |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| Sbjct 1370 CAAGATGTTGTTGAAGAAAGTGGATGCTCTAACGAAAGCCATTGAAGTGGAGACAAAGAA 1429 Query 1477 GGCAAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAATGTTGAATGAAGA 1536 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1430 GGCGAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAGTGTTGAATGAAGA 1489 Query 1537 GTCAAAACTATGTAGAAAGGCAAAACTACCGAGAAGCCGCATACCCAATCCACGTTGCCA 1596 |||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1490 GTCAAAACAATGTAGAAAGGCAAAACTACCGAGAAGCCGCGTACCTAATCCACGTTGCCA 1549 Query 1597 GTAGAGGAAGAAGAAGCTTATGGG 1620 |||||||||||||||||||||||| Sbjct 1550 GTAGAGGAAGAAGAAGCTTATGGG 1573 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66429387280 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5