BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17220.1
Length=1770
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946510 jgi|Araly1|946510|scaffold_702739.1 2375 0.0
> Ahg946510 jgi|Araly1|946510|scaffold_702739.1
Length=1573
Score = 2375 bits (1286), Expect = 0.0
Identities = 1487/1584 (94%), Gaps = 13/1584 (1%)
Strand=Plus/Plus
Query 39 GGAGCCGTTGAGACTACAAAATGACTGCAGCAGAAAACCCTTTTGTATCTGACACCTCTT 98
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 GGAGCCGTTGAGACTACAAAATGACTGCAGAAGAAAACCCTTTTGTATCTGACACCTCTT 60
Query 99 CTCTGCAAAGCCAGCTTAAAGAAAAAGAGAAAGAGCTTTTGGCTGCTAAAGCTGAAGTTG 158
||||||||| |||||||| |||||||||||||||||||||| |||||||||||||| |||
Sbjct 61 CTCTGCAAAACCAGCTTATAGAAAAAGAGAAAGAGCTTTTGACTGCTAAAGCTGAAATTG 120
Query 159 AGGCTTTGAGAACAAATGAAGAGCTCAAAGACAGAGTCTTTAAGGAGCTTAGAGAAAACG 218
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 121 AGGCTTTGAGAACAAATGAAGGGCACAAAGACAGAGCCTTTAAGGAGCTTAGAGAAAACG 180
Query 219 TGAGGAAGTTGGAGGAGAAACTTGGAGCCACCGAGAATCA-AGTTGACCAAAAGGAGTTG 277
||||||||||||||||| |||||||||||||||||||| | ||||||||||||||| ||
Sbjct 181 TGAGGAAGTTGGAGGAGCAACTTGGAGCCACCGAGAAT-ATTGTTGACCAAAAGGAGGTG 239
Query 278 GAGAGGAAGAAGCTAGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 337
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGATGAAGAAGCTGGAAGAAGAGAAGGAAGATGCATTGGCGGCACAGGACGCTGCAGAA 299
Query 338 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGACGATGACTCTCTACCCCTAGAATCC 397
||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||
Sbjct 300 GAAGCACTAAGGAGGGTTTACACTCACCAACAGGATGATGACTCTCTTCCCCTTGAATCC 359
Query 398 ATCATAGCTCCTCTTGAATCTCAGATCAAGATTCACAAGCATGAGATTTCTGCACTTCAA 457
|| ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 360 ATTATAGCTCCTCTTGAAGCTCAGATCAAGTTTCAAAAGCATGAGATTTCTGCACTTCAA 419
Query 458 GAGGACAAGAAAGCGTTGGAACGTCTAACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 517
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 GAGGACAAGAAAGCGTTGGAACGTCTGACAAAATCAAAAGAATCGGCGCTTCTTGAAGCA 479
Query 518 GAGAGAATCTTGAGAAGTGCCCTTGAACGTGCTTTGATTGTTGAAGAGGTCCAGAACCAT 577
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 480 GAGAGAATCTTGAGAAGTGCCCTTGAACGGGCTTTGATCGTTGAAGAGGTCCAGAACCAC 539
Query 578 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 637
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACTTTGAACTTCGACGACAGATTGAGATATGCCAGGATGAGAACAAGTTTCTTGAGAAA 599
Query 638 ATTAACCGCCAGAAAGTGTTGGAGATTGAGAAGCTCTCCCAAAGCATTGTAGAACTGGAG 697
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 600 ATCAACCGCCAGAAAGTGTTGGAGATCGAGAAGCTCTCCCAAAGCATTGTAGAATTGGAG 659
Query 698 GAAGCGATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 757
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAAGCAATCTTGGCAGGAGGAACAGCCGCCAATGCAGTTCGAGACTATCGCCGCCAAATC 719
Query 758 TCCCAGCTCAATGATGAGAAGAGAACCTTAGAGAGAGAGCTAGCCAGAGTCAAAGTGTCA 817
|| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 720 TCACAGCTCAATGAAGAGAAGAGGACCTTGGAGAGAGAGCTAGCCAGAGTCAAAGTATCA 779
Query 818 GCAAGTAGAGTGGCACTTGCAGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 877
||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 780 GCAAGTAGAGTTGCCCTTGCCGTTGCTAACGAGTGGAAAGATGAGAACGATAGAGTCATG 839
Query 878 CCTGTAAAGCAATGGCTTGAAGAGAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 937
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 840 CCCGTAAAGCAATGGCTTGAAGAAAGAAGGATTCTCCATGGAGAAATGCAGAAATTGAAA 899
Query 938 GATAAACTCGCTGTTTCCGAGAGAACCGCTAAGGCTGAGTCCCAGCTAAAGGAGAGGTTA 997
||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 900 GATAAACTCTCTGTTTCCGAGAGAACCGCTAAGGCTGAATCTCAGCTAAAGGAGAGGTTG 959
Query 998 AAGCTTAGGCTGAAAACCATAGAAGATGGCTTGAAGGGCCCAAACACGTTTTTCGTCTCT 1057
||||| ||||||||||||||||||||||| || |||||||||||||||| | ||||||
Sbjct 960 AAGCTGAGGCTGAAAACCATAGAAGATGGTTTAAAGGGCCCAAACACGTGTAAAGTCTCT 1019
Query 1058 CCAACTACAAAGACTGAAAAATCTGGCAAGATTTTAGGATTCTTGACCAGTGGTGGTGGC 1117
||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 1020 CCAACTACAAAGACTGAAAAACCTGGCAAGATTTTAGGATTCTTGACGAGTGGTGGTGGA 1079
Query 1118 TCAAAGAAAAGGTCTAGTTCTCAGCTAAGAGGCTCAGTTACAGGCAGAATCCATGCTATG 1177
|||||||||||||||| ||| || | |||| |||| |||||||||||||| ||
Sbjct 1080 TCAAAGAAAAGGTCTACTTC--AG----G---CTCAATTACTGGCAGAATCCATGCCCTG 1130
Query 1178 AATCAGCCAATTGACAGAGTTGGGGAAAGTGATGAAATGGAGAATTCAAAGATTACTGCA 1237
|||||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| || |||
Sbjct 1131 AATCAGCCGATTCACATAGTTGCAGAAAGTGATGAAAAGGAGAATTCAAAGATAACCGCA 1190
Query 1238 AACGGAT-TGACTGATCAACATGAAGAAGATAGCGAAAGGAAAACAGAGGAAGATGGAAA 1296
|||| || | |||||||| |||||||||||| || |||||||| ||||||||||| ||||
Sbjct 1191 AACG-ATATAACTGATCAGCATGAAGAAGATGGCAAAAGGAAAGCAGAGGAAGATAGAAA 1249
Query 1297 TGTTTATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTGAT 1356
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1250 TGTAGATTCTGAAGATATGGTTTCAGGGTTTTTATATGACAGGCTTCAGAAGGAAGTAAT 1309
Query 1357 TGCTTTAAGGAAGCTATGTGAGAGTAAAGAGGGTACTATAAATGCCAAAAATGAAGAAAT 1416
||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1310 TGCTTTAAGGAAGATTTGTGAGAGTAAAGAGGGTACTATTAATGCCAAAAATGAAGAAAT 1369
Query 1417 CAAGATGTTGTTGAAGAAGGTGGATGCTCTAACGAAAGCCATTGAAGTTGAGACAAAGAA 1476
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1370 CAAGATGTTGTTGAAGAAAGTGGATGCTCTAACGAAAGCCATTGAAGTGGAGACAAAGAA 1429
Query 1477 GGCAAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAATGTTGAATGAAGA 1536
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1430 GGCGAAGAGGGAAGCCGCAGCGAGAGAAAAGGAAAACGCATTGGCAGTGTTGAATGAAGA 1489
Query 1537 GTCAAAACTATGTAGAAAGGCAAAACTACCGAGAAGCCGCATACCCAATCCACGTTGCCA 1596
|||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1490 GTCAAAACAATGTAGAAAGGCAAAACTACCGAGAAGCCGCGTACCTAATCCACGTTGCCA 1549
Query 1597 GTAGAGGAAGAAGAAGCTTATGGG 1620
||||||||||||||||||||||||
Sbjct 1550 GTAGAGGAAGAAGAAGCTTATGGG 1573
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66429387280
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5