BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17230.1
Length=2026
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493153 jgi|Araly1|493153|fgenesh2_kg.7__2586__AT4G17230.1 3048 0.0
> Ahg493153 jgi|Araly1|493153|fgenesh2_kg.7__2586__AT4G17230.1
Length=2004
Score = 3048 bits (1650), Expect = 0.0
Identities = 1877/1985 (95%), Gaps = 21/1985 (1%)
Strand=Plus/Plus
Query 1 CAAGCTGATTCTTGAGTATGCAAGGAAAACTTCTCTTTTGTCCCCTTGTC-AACAAAAAT 59
||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |||||
Sbjct 1 CAAGCTGATTCTTGAGTATGCAACGAAAACTTCTCTTTTGTCCCCTT-CCAAAC-AAAAT 58
Query 60 CTCCCATTCAACAAAATTTCTTCAGCTTCTCT-CCTTCA-AAAGGTTTTTATTCTCCTTG 117
|||||| ||||||||||||||||| | | ||| | | |||||||| |||||||||
Sbjct 59 CTCCCAATCAACAAAATTTCTTCAAAAGGT-TAGCTT-AGACAGGTTTTTGTTCTCCTTG 116
Query 118 GTTTGAACAAGTTACACTGTAGAGAGTGATTTGGCTAAAAGAAGATTGATTCAGGAGCTG 177
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 117 GTTTGAGCAAGTTACACTGTAGAGAGTGATTTGGCTAAAAGAAGATTGATTCCGGAGGTG 176
Query 178 TGTAGTGTATTGCTGGGGTTTTTCCAATGCAAACGTCTCAGAAACATCACAGTGCGGCTG 237
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 TATAGTGTATTGCT-GGGTTTTTCCAATGCAAACGTCTCAGAAACATCACAGTGCGGCTG 235
Query 238 GACTGCACATGCTGTATCCTCAAGTCTACTGTTCACCTCAGTTTCAAGCGAAAGACAACA 297
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 236 GACTGCACATGCTGTATCCTCAAGTCTACTGTTCGCCTCAGTTTCAAGCGAAAGACAACA 295
Query 298 AAGGCTTCTCTGATATCCCGTCCAAAGAAAACTTTTTTACCCTCGAATCCTCCACTGCTT 357
| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 296 ATGGCTTCTCTGATATCCCATCCAAAGAAAACTTTTTTACTCTCGAATCCTCCACTGCTT 355
Query 358 CTGGTAGTCTTCCTTCGTATGACTCTCCTTCTGTGAGCATTACATCTGGCCGGAGCCCGT 417
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 356 CTGGTAGTCTTCCTTCGTATGACTCTCCTTCTGTGAGCATCACATCTGGCCGGAGCCCGT 415
Query 418 TTTCTCCTCAGGGCTCTCAGTCTTGCATCTCGGATCTCCATCATTCCCCTGACAACGTCT 477
||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 416 TTTCTCCTCAGGGCTCTCAATCATGCATCTCGGATCTCCATCTTTCCCCTGACAACGTCT 475
Query 478 ATGGATCACCTTTGAGTGGGGTGTCATCTCTTGCCTATGATGAAGCTGGAGTCAAGAGTA 537
|||||||||| |||||||||||||| ||| ||||||||||||||||||| ||||||||||
Sbjct 476 ATGGATCACCCTTGAGTGGGGTGTCTTCTTTTGCCTATGATGAAGCTGGGGTCAAGAGTA 535
Query 538 AGATTCGGGAACTTGAGGTCTCGCTGCTGAGTGGTGATACAAAAGTTGAAGAATTCTCAG 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 536 AGATTCGGGAACTTGAGGTCTCGCTGCTGAGTGGTGATACAAAAGTTGAAGAATTCTCTG 595
Query 598 GTTTTAGCCCCGCTGCTGGGAAGTCGTGGAACTGGGATGAACTTTTGGCTTTGACTCCAC 657
|||| ||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 596 GTTTCAGCCCTGCTGTTGGGAAGTCGTGGAACTGGGATGAACTCTTGGCTTTGACTCCGC 655
Query 658 AGTTGGACTTGAAAGAGGTGCTGGTGGAGGCTGCTCGGGCAGTCGCTGATGGGGATTTCG 717
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 656 AGTTGGACTTGAAAGAGGTGCTGGTGGAGGCCGCTCGGGCAGTCGCTGATGGGGATTTTG 715
Query 718 CTACAGCGTATGGATTCCTTGATGTCTTGGAACAGATGGTGTCAGTCTCAGGCAGTCCGA 777
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 716 CTACAGCGTATGGATTCCTCGATGTCTTGGAACAGATGGTGTCGGTCTCAGGCAGTCCGA 775
Query 778 TCCAACGGCTAGGCACTTACATGGCAGAAGGGCTTAGAGCGAGGCTTGAGGGGTCTGGGA 837
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 776 TCCAACGGCTAGGCACTTACATGGCAGAAGGGCTTAGAGCAAGGCTTGAGGGGTCTGGGA 835
Query 838 GCAATATATACAAATCCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACA 897
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCAATATATACAAAGCCTTGAAATGCAATGAACCAACGGGAAGGGAACTGATGTCTTACA 895
Query 898 TGAGTGTTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACTGCGAATGTTG 957
||||||||||||||||||||||||||||||||||||||||||||||||| || |||| ||
Sbjct 896 TGAGTGTTCTCTATGAAATCTGCCCCTACTGGAAATTCGCGTACACAACAGCAAATGCTG 955
Query 958 AGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGATTTTCAGATTGCAC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 956 CGATCTTGGAAGCAATAGCTGGGGAAACCAGAGTCCACATTATCGATTTTCAGATTGCGC 1015
Query 1018 AGGGATCACAATACATGTTTTTGATTCAGGAGCTTGCGAAACGCCCTGGTGGGCCGCCGT 1077
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1016 AGGGATCACAATACATGTTTTTGATCCAGGAGCTTGCGAAACGCCCTGGTGGGCCGCCGT 1075
Query 1078 TGCTGCGTGTGACGGGTGTGGATGATTCACAGTCCACCTATGCTCGTGGGGGAGGACTCA 1137
| |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1076 TTCTGCGTGTGACGGGTGTGGACGATTCACAGTCCACCTATGCTCGTGGGGGAGGGCTCA 1135
Query 1138 GC-TTGGTAGGTGAGAGGCTTGCAACTTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTT 1196
|| ||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1136 GCCTTG-TAGGTGAGAGGCTCGCAAAGTTGGCGCAGTCATGTGGTGTCCCGTTTGAGTTT 1194
Query 1197 CACGATGCCATCATGTCTGGGTGCAAGGTGCAGCGGGAACATCTCGGGTTGGAACCTGGC 1256
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1195 CACGATGCTATCATGTCTGGGTGCAAGGTGCAGCGGGAACACCTCGGGGTGGAACCTGGC 1254
Query 1257 TTTGCTGTTGTTGTGAACTTCCCATATGTATTACACCACATGCCAGACGAGAGCGTAAGT 1316
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1255 TTTGCTGTTGTTGTGAACTTCCCATATGTGTTACACCACATGCCTGACGAGAGCGTAAGT 1314
Query 1317 GTTGAAAATCACAGAGACAGGCTGCTGCATCTGATCAAGAGCCTCTCCCCAAAACTGGTT 1376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1315 GTTGAAAATCACAGAGACAGGCTGCTGCATCTGATCAAGAGCCTCTCCCCAAAACTCGTT 1374
Query 1377 ACTCTAGTAGAGCAAGAATCCAACACAAACACCTCGCCATTCCTGTCACGGTTTGTGGAA 1436
|||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1375 ACTCTAGTGGAGCAAGAATCAAACACAAACACCTCGCCTTTCCTGTCACGGTTTGTGGAG 1434
Query 1437 ACACTGGATTACTACACAGCGATGTTTGAGTCGATAGATGCAGCACGGCCACGGGATGAT 1496
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 1435 ACACTGGATTACTACACAGCGATGTTTGAGTCGATAGATGTAGCGCGGCCACGGGATGAT 1494
Query 1497 AAGCAGAGAATCAGCGCAGAACAACACTGTGTAGCAAGAGACATAGTGAACATGATAGCA 1556
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1495 AAGCAGAGAATCAGCGCAGAACAACACTGCGTAGCAAGAGACATAGTGAACATGATAGCG 1554
Query 1557 TGTGAGGAGTCAGAGAGAGTAGAGAGACACGAGGTACTGGGGATATGGAGGGTCAGAATG 1616
|| ||||| |||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 1555 TGCGAGGATTCAGAGAGAGTAGAGAGACACGAGGTGCTGGGGAAATGGAGGGTGAGAATG 1614
Query 1617 ATGATGGCTGGGTTCACGGGTTGGCCGGTCAGCACATCTGCAGCGTTTGCAGCGAGTGAG 1676
|||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1615 ATGATGGCTGGGTTCACGGGCTGGCCAGTCAGCACATCCGCAGCGTTTGCAGCAAGTGAG 1674
Query 1677 ATGCTGAAAGCTTATGACAAAAACTACAAACTGGGAGGCCATGAAGGAGCGCTCTACCTC 1736
|||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 1675 ATGCTGAAAGGTTATGACAAAAACTACAAACTGGGAGGGAATGAAGGAGCGCTATATCTC 1734
Query 1737 TTCTGGAAGAGACGACCCATGGCTACATGTTCCGTGTGGAAGCCAAACCCAAACT-A--- 1792
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1735 TTCTGGAAGAGACGACCCATGGCTACATGTTCCACGTGGAAGCCAAACCCAAACCCAAAC 1794
Query 1793 --GATTGGGTAAGTTATAGTGATGATGGTTACTTGAGTGGATAAAGAAGAGCACAACAAA 1850
|||||||||| |||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1795 CAGATTGGGTAAATTATAGTGATGATGGTGACTTGAGTGGAT---GAAGAGCACAACAAA 1851
Query 1851 AACACATCTGTCGCTGTAAATTTTTTAGGATGTGCAATGATGTTTTAAGTTGTAACACAA 1910
||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||
Sbjct 1852 AACACATCTGTCGCTGTAAATTTTTGAGGATGTGCAATGATGTTT-AAGTTGTAATACAA 1910
Query 1911 CCTAAGTTATATATGTATACAAACCAAACCTGGTGGTTGTTTTT-CTCTTGTAAATTGTC 1969
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1911 CCTAAGTTATATATGTATACAAACCAAACCTGGTGGTTGTTTTTTCTCTTGTAAATTTTC 1970
Query 1970 ATGTG 1974
|||||
Sbjct 1971 ATGTG 1975
Score = 54.7 bits (29), Expect = 3e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 1997 TGAAATATAACCAAAACATTGATTAGGTC 2025
|||||||||||||||||||||||||||||
Sbjct 1976 TGAAATATAACCAAAACATTGATTAGGTC 2004
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76180490000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5