BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17240.1
Length=1222
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946508 jgi|Araly1|946508|scaffold_702737.1 1611 0.0
> Ahg946508 jgi|Araly1|946508|scaffold_702737.1
Length=1072
Score = 1611 bits (872), Expect = 0.0
Identities = 1008/1073 (94%), Gaps = 11/1073 (1%)
Strand=Plus/Plus
Query 67 GAACCTTCCATC-AATAATGGCGTCTCGCTACAATTCCTACGATTCTAGATCATCCGTAA 125
|||| ||||||| || |||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 7 GAACGTTCCATCGAA-AATGGCATCTCGCTACAATTCCTACGATTCTAGATCATCAGTAA 65
Query 126 CCTCCTCGATTCACTCAGATCTATCATCCTCCGCAGAATTCAAATCGAACAAGCCAATTT 185
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||
Sbjct 66 CCTCCTCGATTCACTCAGATCTATCTTCCTCCGCCGAATTCAAATCGAACAAGCCAGTTT 125
Query 186 CATCGAAAGCCATTGTCAGATCCAAATCTTCCTACTTAACCAAAACAACGAAGCCCATAA 245
|||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||
Sbjct 126 CATCCAAAGCCATTGTCAGATCCAAATCTTCCTACTTGACCAAAACAACGAAACCCGTAA 185
Query 246 AGCCTGATAGTAATCCTGGAAACCTCACTAATATGATGAAGAAGCTAATGGAAATGAAGA 305
| ||||||| ||||||||||||||||||| |||||||||||||||| ||||| |||||||
Sbjct 186 ATCCTGATAATAATCCTGGAAACCTCACTTATATGATGAAGAAGCTGATGGAGATGAAGA 245
Query 306 AATCTAATTCCAAGAGCAAGAGGGTCGAGCTTGTGATTCCCGAGGAACTGAAGAAAATTG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AATCTAATTCCAAGAGCAAGAGGGTCGAGCTTGTGATTCCCGAGGAACTGAAGAAAATTG 305
Query 366 ATACTGGCAAAGGAGGAGGGAAGAGTACATTGGGAACATTGCAGAGGAAGCTATTCGGGA 425
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 306 ATACTGGTAAAGGAGGA---AAGAGCACATTGGGAACATTGCAGAGGAAGCTATTCGGGA 362
Query 426 AGGAGAAGGTGAAGGCATTGACAGAGGTTAAGAGTAACACTAGGACATTGTCTATGGTTC 485
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 363 AGGAGAAGGTGAAGCCATTGACAGAGGTTAAGGGTAACACTAGGACATTGTCTATGGTTC 422
Query 486 TGCGAAGCGAAAGGGAGCTTCTGGGGATGAACAAGGACCAGGAGGTTGAAATAGCTGAGC 545
| |||||||| |||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 423 TACGAAGCGAGAGGGAGCTTCTGAGCATGAACAAGGACCAGGAGGTTGAAATCGCTGAGC 482
Query 546 TAAAGTTTCAGCTTGAAGAGAAGAACCGAGAAGTGGAGAAGTTGAAGGATCTGTGTCTGA 605
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 483 TAAAGTTGCAGCTTGAAGATAAGAACCGAGAAGTGGAGAAGTTGAAGGATCTGTGCCTGA 542
Query 606 AGCAAAGGGAAGAGATAAAGTCACTGAAGAGTGCGGTTCTGTTTCCGGATTCGATGAATA 665
|||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 543 AGCAAAGGGAGGAGATAAAGTCACTGAAGAGTGCAGTTCTGTTTCCGGATGCGATGAATA 602
Query 666 GTCAAATCAATCAAATGCAGGAGCTGAATCAGGCGAGAG-AGATTATACCTAATCTTCAA 724
| ||||| | ||||||||||||||||||||||| || | |||| || ||||| ||||||
Sbjct 603 GCCAAATTAGCCAAATGCAGGAGCTGAATCAGGCAAG-GCAGATCATCCCTAACCTTCAA 661
Query 725 AAGCAGGTCATTTCACTTAATGGACAGCTCCAATGCATTGCTCAAGACCTTGCTGAGGTG 784
||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 662 AAGCAGGTCATTTCACTCAATGGCCAGCTTCAATGCATTGCTCAAGACCTTGCTGAGGTG 721
Query 785 AAAGCGAACAAGTACTTGTCAGAAAGCTGTTACTGGCAAGCACAGACTTCTTCCTATGAT 844
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 722 AAGGCGAACAAGTACTTGTCAGAAAGCTGTTATTGGCAAGCACAGACTTCTTCCTATGAT 781
Query 845 TCACTGGAATTCAGCTCAGGTAGCCCTGATGGATTGGCTCTGGAAGATTTGAATCCATGC 904
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 782 TCACTGGAATTCAGCTCAGGTAGCCCTGATGGATTAGCTCTGGAAGATCTGAATCCATGC 841
Query 905 CTAACTCCTTATACCAAGAAGAAGCCCAAGGAGTATGAGAGGGTTGACTCAGCAGAAGAG 964
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 842 CTAACCCCTTATACCAAGAAGAAGCCCAAGGAGTATGAGAGGGTGGATTCAGCAGAAGAG 901
Query 965 AGTTTATCAGGGAGAAGCACTATAACAACAACAGGCGGTAAAGTCAAATCGAGTTC-AAG 1023
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 902 AGCTTATCAGGGAGAAGCACTATAACAACAACAGGAGGTAAAGTCAAATCGAGTTCGAA- 960
Query 1024 AAGTGTAAAGATGTCAAGGAGCTCAGAGGGAAAGGCAGGGCAGAGATCAGAGGAGAGCAA 1083
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 961 AAGTGTAAAGATGTCAAGGAGCTCGGAGGGAAAGGCAGGGCGGAGATCAGAGGAGAGCAA 1020
Query 1084 AGGATGGTATAGAGGTGGGAGGATGTTTTAAGGTGaaa-aaaaGAAAATGCCT 1135
|||||||||||| |||||||| |||||||||||| ||| ||||||||||||||
Sbjct 1021 AGGATGGTATAGGGGTGGGAGAATGTTTTAAGGT-AAAGAAAAGAAAATGCCT 1072
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45633131649
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5