BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17250.1
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493150 jgi|Araly1|493150|fgenesh2_kg.7__2583__AT4G17250.1 3570 0.0
Ahg494215 jgi|Araly1|494215|fgenesh2_kg.8__31__AT5G47580.1 1000 0.0
> Ahg493150 jgi|Araly1|493150|fgenesh2_kg.7__2583__AT4G17250.1
Length=2283
Score = 3570 bits (1933), Expect = 0.0
Identities = 2172/2289 (95%), Gaps = 9/2289 (0%)
Strand=Plus/Plus
Query 39 GAGACAAATCTAGTGATGGGTTGCGACTCACATGGAAATCTAAGCGACACAGAGTTCAGC 98
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1 GAGACAAATCTAGTGATGGGTTGCGACTCCCATGGCAATCTAAGCGACACAGAGTTCAGC 60
Query 99 AAGCCGTTGCCATCCATAGGTGTATATGTCGCTGCAGCTTCACTGATCTGTGGAGTTGCT 158
|||||||||||||| ||||||||||| || |||||||||||| ||||||||||||||||
Sbjct 61 AAGCCGTTGCCATCGATAGGTGTATACGTTGCTGCAGCTTCAGTGATCTGTGGAGTTGCC 120
Query 159 ATGTTTTCCGATCTTCTTCACGGCTTCCGGCACCGTAAGTTCTGGTTTCCTTGCAAATTC 218
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 ATGTTTTCCGATCTTCTTCACGGCTTCCGGCACCGTAAGTTCTGGTTCCCTTGCAAATTC 180
Query 219 TTCTCTCTCAACGCTACCACTCTCACCTTTATCTCTGTATGCGTCAAACTCTCATTGGAT 278
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 181 TTCTCTCTCAACGCTACCACTCTCACCTTTATCTCTGTCTGCGTCAAACTCTCCTTGGAT 240
Query 279 CTCAACACTTCTATGCCTAGTCGCCAAGATCAGCTTGCTAAACTCAGCAGCAGCGTCTTC 338
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CTCAACACTTCTATGCCTAGTCGCCAAGATCAGCTTGCTAAACTCAGTAGCAGCGTCTTC 300
Query 339 GTATGCACCGTGATGGCTAATTCCATGCCTTCTCTTGGTTACATGGTCACGCAAGATCTC 398
|| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 301 GTCTGCACTGTGATGGCTAATTCCATGCCTTCTCTTGGTTTCATGGTCACACAAGATCTC 360
Query 399 CTCATGAACCTCACGGCTCTTGGGATTCTAGTCATCACCGATGTTGTTAACATCTGTATC 458
|||||||||||| |||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 361 CTCATGAACCTCGTGGCTCTTGGGATTCTAGTTATCACTGATGTTGTTAATATCTGTATC 420
Query 459 CAATTGGGTACAGGAGCTATATATGTGTTCCCTCAAGAACACGCTCTGGTCATTATTCTC 518
|||||||| ||||||||||||||||| || |||||||||||||||| |||||| ||||
Sbjct 421 CAATTGGGCACAGGAGCTATATATGTTTTTACTCAAGAACACGCTCTCGTCATTGTTCTG 480
Query 519 ATGCTTTTGATGTTTATGATCTTGAGTTTCTCTGCTATCACTGTCCCAGCCACAAAGCGT 578
||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 481 ATGTTTTTGATGTTTATGATCTTGAGTTTCTCTGCTATCACAGTCCCGGCCACAAAGCGT 540
Query 579 TTCTTGGAGCTCAAGTACAAGAAGAGATACGAGTTTGCTTTGAAGCAGTGTCCTTCGTAT 638
||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 541 TTCTTAGAGCTTAAGTACAAGAAGAGATACGAGTTCGCTTTGAAGCAGTGTCCTTCGTAT 600
Query 639 ACAGAGAGAAGAAGAGGGGTTCCTAAGCTTAAAGAAGATCTGATGAAATTCTGGATGATG 698
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ACAGAGAGAAGGAGAGGGGTTCCTAAGCTTAAAGAAGATCTGATGAAATTCTGGATGATG 660
Query 699 GCTCACACTTCTAGCCCTCAGTTTGTGATGGCTCGCTCTGTTACTTGCACCACCACTGGT 758
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 GCTCACACTTCTAGCCCTCAGTTTGTGATGGCTCGCTCTGTTACTTGCACCACCTCTGGT 720
Query 759 TTCCTCTGTTTCTTGATTGCAATCACATTGGCTGAAGCCATGGTCCGGTCTTACTTTCTT 818
|||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 721 TTCCTCTGTTTCTTGAGCGCAATTACATTGGCTGAAGCCATGGTCCGTTCTTACTTTCTT 780
Query 819 CAACCCCGGTCACTAGGGTTCTGCAATGGAGATTCTGATTACAAATGGTCAACCACTTTG 878
||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CAAACTCGGTCACTTGGGTTCTGCAATGGAGATTCTGATTACAAATGGTCAACCACTTTG 840
Query 879 GTTCTAGTCTCCCAGACAGCTGCAGTGGCCATAGGAACCGTTGCTCCAGCGAGCAGATGG 938
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 GTTCTAGTCTCCCAAACAGCTGCAGTAGCCATAGGAACCGTTGCTCCAGCGAGCAGATGG 900
Query 939 CTCAAGGCAGTGAACTTTAGGTGTCCATTTAGAAACAA-GAAATCTTTGAAAGATGAGTT 997
| || ||||||||||| |||||||||||||||| ||| |||||||||||||||||||||
Sbjct 901 TTGAAAGCAGTGAACTTGAGGTGTCCATTTAGAA-CAAAGAAATCTTTGAAAGATGAGTT 959
Query 998 AAGAGTAGAGAGTTATTGGGTAGAGTGTCTCGCTGAGAAGAAAGAACGTCCCTTGAACTT 1057
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 960 GAGAGTAGAGAGTTATTGGGTAGAGTGTCTCGCTGAGAAGAAAGAACGTCCTTTGAACTT 1019
Query 1058 TTGGATGCTCCATGGTCGCTGCAGCAGGAAGCTTGCACACGACTTAAACCGGTTGATGCT 1117
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1020 TTGGATGCTCCATGGTCGCCGCAGCAGGAAGCTTGCACACGACGTAAACCGGTTGATGCT 1079
Query 1118 TGATATCTGCATTGCAACACAGTATGGTATAGTGCTGGCTAGCAAGTTTCTCCGTTTCAT 1177
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1080 TGATATCTGCATTGCAACACAGTATGGTATAGTTCTGGCTAGCAAGTTTCTCCGTTTCAT 1139
Query 1178 CACGGTCTATTGTTCGAGTAGAATCTTGCTATGTTGTTTTCATTTCACCTTCAAAAGTGA 1237
|||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 1140 CACGGTCTATTGTTTGAGTAGAATCTTGCTATGTTGTTTTTATTTCACCTACAAAAGTGA 1199
Query 1238 TTCTGTTGCAAACGCTGAGTCCTCCGGTTCAAATCCATCAACCAGACAATTCGTTCTGCA 1297
|||||||||||||||||||||||| ||||||||||||||||| | |||||| ||||||||
Sbjct 1200 TTCTGTTGCAAACGCTGAGTCCTCGGGTTCAAATCCATCAACGATACAATTTGTTCTGCA 1259
Query 1298 TCTTGAAGGAGAGGAGGAGATGGTGGACTACATGGCACGTAGCAACCGTGTGGCCACAGA 1357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1260 TCTTGAAGGAGAGGAGGAGATGGTGGACTACATGGCACGGAGCAACCGTGTGGCCACAGA 1319
Query 1358 CCACTTGATACAAAAGGGTCGGAAGAAACAACCTGTAAACTTGATAGAGCTCTTGGAGGC 1417
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1320 CCACTTGATACAAAAAGGTCGGAAGAAACAACCCGTAAACTTGATAGAGCTCTTGGAGGC 1379
Query 1418 AACAACTTTCATCTCAAAAGGATTTGAAGGGATTCGAGATTTTGACAGCGACGAGGTTTC 1477
||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| |
Sbjct 1380 AACAACTCCCATCTCAAAAGGATTTGAAGGGATCCGAGACTTTGACAGCGACGAGGTCGC 1439
Query 1478 TTCTCTGGCCTCTGGAGAGCCACCTAATAGTTGGGCCCTTCCATTGGTAACACTGACGAG 1537
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1440 TTCTCTGGCCTCTGGAGAGCCACCTAATAGTTGGGCCCTTCCACTGGTAACACTGACGAG 1499
Query 1538 TATCGCTGTCGCTCTTCCTAACATCAAGCCTTGCTCGCTCAAGAAGTTAGTGAAAGCTGT 1597
||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 1500 CATCGCTGTCGCTCTTCCTAACATCAAGCCTTACTCACTGAAGAAGTTAGTGAAAGCTGT 1559
Query 1598 AAACGAGGCATTGGTCTATGTCAACAAGTTCGAAGAGGTCTTAGACATCGAAGGAGAGTT 1657
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1560 AAACGAGGCATTGGTCTATGTCAACAAGTTCGAAGACGTCTTAGACATCGGAGGAGAGTT 1619
Query 1658 AGCTAACAGCAGGAAAGCTGCAGAAGTTGTTTGGTTAGGAGTTGATCTCTACCATAAATG 1717
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1620 AGCTAATAGCAGGAAAGCTGCAGAAGTAGTTTGGTTAGGAGTTGATCTCTACCATAAATG 1679
Query 1718 GCTCAACGTGGATCTTCGAAAACTATCCAAGCAACATAGCAAAACACCACAGGAAGTTCT 1777
||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||
Sbjct 1680 GCTCAACGTGGATCTTCGAAAACTATCCAAGAAACAAAGCAAAACACCACAAGAAGTTCT 1739
Query 1778 TAAAGAGCTGGTAGATATAGCACAA-AAAGAGTTTACAGAGTCATGGGAGAAAAATCGGA 1836
|||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |
Sbjct 1740 TAAAGAGCTGGTAGATATAGCA-AAGAAAGAGTTTACAGAGTCATGGGAGAAAAACCGTA 1798
Query 1837 TACTATGCATGAAGCATAAGCCCTCGCACTGGCCCATCAAGACTCAAGCAGCAAACTCAA 1896
||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1799 TACTATGCATGAAACATAAGCCCTCTCAATGGCCCATCAAGACTCAAGCAGCAAACTCAA 1858
Query 1897 TGTACCGAATCAGCCAAACCCTTTTGATGAAGTACGAATCAAGAAACATTGAAACAGAGG 1956
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1859 TGTACCGAATCAGCCAAACTCTTTTGATGAAGTACGAATCAAGAAACATTGAAACAGAGG 1918
Query 1957 AGACTCTGTTGAAAGATGTGGAAAAGATGGTATCGGACATAGTATCAGGATGCTTTTGCA 2016
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 1919 AGACTCTGTTGAAAGATGTGGAGAGGATGGTATCGGACATAGTATCAGGATGCTTTTGCA 1978
Query 2017 ACACGGCACAAGTTATTGGAATGAAGTGTTTGGTTACAGCAGTGGAAGTGAGGGAAGCGT 2076
|||||||||| || || ||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1979 ACACGGCACAGGTAATAGGAATGAAGTGTTTGGTGACAGCAGTGGAAGTGAGAGAAGCTT 2038
Query 2077 CGGTGAGAGAAGCGGCAATGCATTTGGGGAGAACAGAGAAGATACTTGAGATCGTAGACA 2136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2039 CCGTGAGAGAAGCGGCAATGCATTTGGGGAGAACAGAGAAGATACTTGAGATCGTGGACA 2098
Query 2137 GGAGATGCATGCCTGCTTTGTCTCATCACAAAGTGGCAAAGATTGATGAATGGAGAGAGT 2196
| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2099 GAAGATGCATGCCTGCCTTGTCTCATCACAAAGTGGCTAAGATTGATGAATGGAGAGAGT 2158
Query 2197 TTTATAGGACCAATAAATCCATCACTTTCACTCATCCTTCGTCCCAGTGTACGACCCGTG 2256
||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||
Sbjct 2159 TTTATAGGACCAATAAATCCATCTCTTTCACTCATCCTTCGTCTCAGTGTACCACCCGTG 2218
Query 2257 AACTCATTATCAACCTAGAATAACACATTTTCTTGTCACA-TTTAAAGAATTAATTACGT 2315
|||||||| | || ||||||||||||||| || | || | ||||||||||||||||| |
Sbjct 2219 AACTCATTCTAAATCTAGAATAACACATT--CT-GACA-AGTTTAAAGAATTAATTACTT 2274
Query 2316 TTTGTACAT 2324
|||||||||
Sbjct 2275 TTTGTACAT 2283
> Ahg494215 jgi|Araly1|494215|fgenesh2_kg.8__31__AT5G47580.1
Length=2554
Score = 1000 bits (541), Expect = 0.0
Identities = 1651/2166 (76%), Gaps = 159/2166 (7%)
Strand=Plus/Plus
Query 60 TGCGACTCACATGGAAATCT-AAGCGACACAGAGTTCAGCAAGCCGTTGCCATCCATAGG 118
|||||| | ||||| || | || ||| |||||||||||||||| || || | || ||
Sbjct 227 TGCGACGCCCATGGCGATTTGAA-CGATGCAGAGTTCAGCAAGCCCTTACCTTTGATTGG 285
Query 119 TGTATATGTCGCTGCAGCTTCACTGATCTGTGGAGTTGCTATGTTTTCCGATCTTCTTCA 178
| | || || || | ||||||||| |||||||| | || ||| | |||||| ||||
Sbjct 286 TATCTACGTTGCCGTAGCTTCACTCATCTGTGGTCTAGCCATGGCCGCTGATCTTATTCA 345
Query 179 CGGCTTCCGGCACCGTAAGTTCTGGTTTCCTTGCAAATTCTTCTCTCTCAACGCTACCAC 238
||||||| | ||||| || ||||||||||| || || ||||||||||||||||| || |
Sbjct 346 CGGCTTCAGACACCGCAAATTCTGGTTTCCGTGTAAGTTCTTCTCTCTCAACGCCACTTC 405
Query 239 TCTCACCTTT-ATCTCTGTATGCGTCAAACTCTCAT-TGGATCTCAACACTTCTATGCCT 296
||| | |||| ||| |||| | |||||||||| | |||||||||||||||| |||||
Sbjct 406 TCTGA-CTTTCATCGCTGTCGGAATCAAACTCTC-TGTGGATCTCAACACTTCAATGCCG 463
Query 297 AGTCGCCAAGATCAGCTT-GCTAAACTCAGCAGCAGCGTCTTCGTATGCACCGTGAT-GG 354
||||| || |||||| || ||||| |||||||||| |||||| || || || ||||| ||
Sbjct 464 AGTCGTCAGGATCAG-TTAGCTAAGCTCAGCAGCACCGTCTTTGTGTGTACGGTGATGGG 522
Query 355 CTAATTCCATGCCTTCTCTTGGT-TACATGGTCACGCAA-GATCTCCTCATGAACCTCAC 412
| ||||| ||||||||||| ||| || |||| || ||| |||||||| ||||| || |
Sbjct 523 C-AATTCGATGCCTTCTCTGGGTATA-ATGGACA-ACAATGATCTCCTTATGAATCTTAT 579
Query 413 GGCTCTT-GGGATTCTAGTCATCACCGATGTTGTTAACATCTGTATCCAATTGGGTACAG 471
|||| || |||||||| || ||||| |||||||||||||||||||| || |||||||| |
Sbjct 580 GGCT-TTAGGGATTCTTGTAATCACTGATGTTGTTAACATCTGTATTCAGTTGGGTACTG 638
Query 472 GAGCTATATATGTGTTCCCTCAAGAACACGCTCTGGTCATTA-TTCTCATGCTT-TTGAT 529
| || || ||||| ||| || ||||||| ||||||| || ||||||||||| || ||
Sbjct 639 GTGCGATTTATGTTTTCTCTGAAGAACATTTTCTGGTC-GTACTTCTCATGCTTCTT-AT 696
Query 530 GTTTATGATCTTGAGTTTCTCTGCTATC-ACTG-TCCCAGCCAC-AAAGCGTTTCTTGGA 586
| |||||||||| ||||||| || | | |||| ||||| |||| ||| | |||||||
Sbjct 697 GCTTATGATCTTCTGTTTCTCGGCCA-CTACTGTTCCCA-CCACGAAA-AGAATCTTGGA 753
Query 587 -GCTCAAGTACAAGAAGAGATACGA-GTTTGCTTTGAAGCAGTGTCCTTCGTATACAGAG 644
||| |||||||||||||| ||||| | |||| || | ||||||||| | ||| ||
Sbjct 754 GGCT-AAGTACAAGAAGAGGTACGACG-TTGCCATG-A--AGTGTCCTTTGGCTAC--AG 806
Query 645 AGAAGAAGAGGGGTTCCTAAGCTTAA---AG-AAGATCTGATGAAA-TTCTGGATGATGG 699
|| || | | ||| ||||| || || ||||| || | ||| |||||||||||||
Sbjct 807 AG-AG-A-A-CTGTTGCTAAG-AAAATTCAGCAAGATTTG-TCAAAGTTCTGGATGATGG 860
Query 700 CTCACACTTCTAGCCCTCAGTTTGTGATGGCTCGCTCTGTTACTTGCACCACCACTGGTT 759
|||| ||| ||||||||| || ||||||||||| ||||| || ||||| | ||||||
Sbjct 861 CTCATACTAGTAGCCCTCAATTCGTGATGGCTCGTTCTGTCACGTGCACTGCTTCTGGTT 920
Query 760 TCCTCTGT-TTCTTGATTGCAATCAC-ATTGGCTGAAGCCATGGTCCGGTCTTACTTTCT 817
|| ||||| || |||| ||| || || |||| |||||||||||| || ||||||| |
Sbjct 921 TCTTCTGTCTT-TTGAGTGCCATTACGCTTGG-TGAAGCCATGGTGAGGAGTTACTTT-T 977
Query 818 TCA-ACCCCGGTCACTAGGGTTCTGCAATGGAGATTCTGATTACAAATGGTCAACCACTT 876
| | ||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 978 TAAGACCAAGGTCACTTGGGTTCTGCCATGGAGATTCTGATTACAAATGGTCAACCTCTC 1037
Query 877 TGGTTCTAGTCTCCCAGAC-AGCTGCAGTGGCCATAGGAACCGTTGCTCCAGCGAGCAGA 935
||||||| || | |||||| | |||| ||| ||||||| ||| ||||||| |||| ||||
Sbjct 1038 TGGTTCTTGTTTGCCAGACTA-CTGCCGTGACCATAGGGACCATTGCTCCTGCGATCAGA 1096
Query 936 TGGCTCAAGGCAGTGAACTTTAGGTGTCC-ATTTAGAA-ACAAGAAATCTT-TGAAAGAT 992
||| ||| || |||||||| |||||||| ||| ||| | ||||| | || | | |||
Sbjct 1097 TGGTTCACTGCTGTGAACTTCAGGTGTCCTATT-AGAGGA-AAGAAGTATTAT-AGGGAT 1153
Query 993 GAGTTAAGAGTAGAGAGTTATTGGGTAGAGTG-TCTCGCTGAGAAGAAAG-AACGTCCCT 1050
||||| |||||||||||||| ||| | | || | || | |||||||| | ||| |||||
Sbjct 1154 GAGTTTAGAGTAGAGAGTTACTGGACACATTGGT-TCTCAGAGAAGAA-GCAACATCCCT 1211
Query 1051 TGAA-CTTTTGGATGCTCCATGGTCGCTGC-AGCAGGAAGCTTGCACACGACTT-AAACC 1107
| || | ||||||| ||| | | |||| | | ||||||| |||| ||| | | ||| |
Sbjct 1212 T-AAGCCTTTGGATCCTCAAAGATCGCAGATA-CAGGAAGATTGCGCACAA-TGCAAAAC 1268
Query 1108 GGTTGATGCTTG-ATATCTGCATTGCAACACAGTATG-GTATAGTGCT-GGCTAGCAAGT 1164
| | ||| ||| || | || |||| | |||||||| | || ||| | || ||||||
Sbjct 1269 GCTGGATA-TTGGATGTATGTATTGTGATACAGTATGTG-ATTGTGTTTGG-TAGCAAAA 1325
Query 1165 TTCTCCGTTTCATCACGGTCTAT-TGT-TCGAGTA-GAATCTTGCTATGTTGTTTTCATT 1221
|| |||||| |||| |||| | | ||| | | ||| || ||||| | || |||| | ||
Sbjct 1326 TTATCCGTTACATCTCGGTTT-TCTGTGTGG-GTAAGA-TCTTGATGTGCTGTTAT--TT 1380
Query 1222 TCACCTTCAA--A--AGTGATTCTGTTGCAAAC-GCTGAGTCC------TCCGGTTCAAA 1270
| | || || | ||| || || | || || | |||||| |||| ||| ||
Sbjct 1381 TGTC-TT-AAGGACCAGTAATACTATCACACACAG-TGAGTCAGAAAAATCCGATTCTAA 1437
Query 1271 TCCA---TC-A-ACCAG-ACAATT-CG--TT----C-TGCATCTTGAAGGAGAGGAGGAG 1316
|||| || | || || || || || || | ||||||||||||||||||| |
Sbjct 1438 TCCAAGCTCGAGAC-AGGACC-TTGCGAGTTTTGTCCTGCATCTTGAAGGAGAGGATCCG 1495
Query 1317 ATGGTGGAC-TACATGGCACGTAGCAACCGTGTGGCCACAGACCACTTG-ATACAAAAGG 1374
||||||| | |||| || |||||||| | |||||||| || ||| ||| | || |
Sbjct 1496 CTGGTGGATGTG-ATGGTGCGGAGCAACCGGGAAGCCACAGATCA-TTGGATAGAGAATG 1553
Query 1375 GTCGGAA-GAAACAACCTGTAAA-CTTGATAGAGCTCTTGGAGGCAACAACTTTCATCTC 1432
| | ||| ||||||||| || || || ||||||||| ||||| |||||||| ||| ||
Sbjct 1554 G-CAGAAAGAAACAACCAGTGAATCT-GATAGAGCTTTTGGAAGCAACAACACCCATTTC 1611
Query 1433 AAAAGGATTTGAAGGGATT-CGAGATTTTGACAGCGACGAGGTTTCTTCTCTGGCCT-CT 1490
|||||||||||| |||||| | ||| ||||||||| || | || ||||||| ||| |
Sbjct 1612 AAAAGGATTTGATGGGATTGC-AGAGTTTGACAGCAACAAAGTGGCTTCTCTTGCCCAC- 1669
Query 1491 GGAGAGCCACCTAATAGTTGGGCCCTTCCATTGGTAACACTGACGAGTATCGCTGTCGCT 1550
||||||||||| ||| ||||||| || || |||||||||| || || |||||||| |||
Sbjct 1670 GGAGAGCCACCCAATTGTTGGGCTCTCCCGCTGGTAACACTCACAAGCATCGCTGTTGCT 1729
Query 1551 CTTCCTAACATCAAGCCTTGCTCGCTCAAGAAGTTAGTGAAAGCTGTAAACGAGGCATTG 1610
|||||| |||||||||| ||| |||||||||||| | || || || ||||||||| ||
Sbjct 1730 CTTCCTGACATCAAGCCCCCCTCCCTCAAGAAGTTACTCAATGCAGTCAACGAGGCACTG 1789
Query 1611 GTCTATGTCAACAAGTTCGAA-GAGGTCTTAGACATCGAAGGAGAGTTAGCTAACAGCAG 1669
| || |||||||||||| ||| | | || | || | || |||||||| |||||| |||
Sbjct 1790 GACTTTGTCAACAAGTTTGAACGCG-TCCTGGATACCGGAGGAGAGTCGGCTAACCTCAG 1848
Query 1670 GAAAGCTGCAGAAGTTGTTTGGTTAGGAGTTGATCTCTACCATAAATGGCTCAACGTGGA 1729
||||||||| || || |||||| |||| | ||||||||| || || ||| | | |||||
Sbjct 1849 GAAAGCTGCTGAGGTAGTTTGGCTAGGGGCTGATCTCTATCACAAGTGGTTTGATGTGGA 1908
Query 1730 TCTTCGAAAACTATCCAAGCAACATAGCAAAACACCACAGGAA---GTTCTTAAAGAGCT 1786
|||| | |||||||| ||||| || || ||| | | | | ||| |||| | |||||
Sbjct 1909 TCTTAGGAAACTATCAAAGCATCAAAG-AAATC-C-AGAAGAAACCGTTCGT---GAGCT 1962
Query 1787 GGTAGATATAGCACAA-AAAGAGTT-TACAGAGTCATGGGAGAAAAATCGGATACTATGC 1844
| || || || || |||||||| | ||||||||||| ||| || | ||| | |||
Sbjct 1963 CATGGAAATCGCG-AAGAAAGAGTTCT-CAGAGTCATGGCAGATGAACCTGATGGTGTGC 2020
Query 1845 ATGAAGCATAAGCCCTCGCACTGGCCCATCAAGACTCAAGCAGCAAACTCAATGTACCGA 1904
|||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||||
Sbjct 2021 ATGAAGCACAAGCCCTCTCACTGGCCCATCAAGACTCTAGCGGCAAACTCCATGTACCGA 2080
Query 1905 ATCA-GCCAAACCCTTTTGATGAAGTACGAATCAAGAAAC-ATTGAAACAGAGGA-GACT 1961
|| | | ||||| || || | || |||||||||||| || | ||| ||| ||| | |
Sbjct 2081 AT-ATGTCAAACAATTCTGCTCAATTACGAATCAAGAGACTACGGAA-CAGGGGAAGCC- 2137
Query 1962 CTGTTGA-AAGATG-TGGAAAAG-ATGGTATCGGACATAGTATCAGGATGCTTTTGCAAC 2018
|| |||| || | | |||||| | | |||| |||||||| ||||| || |||||||||
Sbjct 2138 CTATTGAGAA-A-GCTGGAAA-GCACAATATCAGACATAGTTTCAGGTTGTTTTTGCAAC 2194
Query 2019 ACGGCACAAGTTAT-TG-GAATGAAGTGTTTGGT-TACAGCAGTGGAAGTGAGGGAAGCG 2075
|||||||| || | | | ||||||||||| | | || || |||||||||||||
Sbjct 2195 GTAGCACAAGTGATATCCG--TCAAGTGTTTGGTGT-CGGCTGTAGAAGTGAGGGAAGAA 2251
Query 2076 TCGGTGAGAGAAGCGGCAATGCATTTGGGGAGAACAGAGAAGATACTTGAGATCGTAGAC 2135
|| ||||||| |||||| ||||| |||| |||||||| ||||| || ||||| ||||
Sbjct 2252 TCAGTGAGAGGAGCGGCTCTGCATCTGGGAAGAACAGAAAAGATTCTAGAGATATTAGAG 2311
Query 2136 AGGAGA 2141
|| |||
Sbjct 2312 AGAAGA 2317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89169263545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5