BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17270.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1 2220 0.0
Ahg948148 jgi|Araly1|948148|scaffold_800035.1 1112 0.0
> Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1
Length=1430
Score = 2220 bits (1202), Expect = 0.0
Identities = 1310/1360 (96%), Gaps = 16/1360 (1%)
Strand=Plus/Plus
Query 71 TCTGAAATCTCAAAACGGAGAACGCGAGGGAACAAGAGATTAAAGCATAGTGAGACCCT- 129
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 23 TCT-AAATCTCAAAACGGAGAACGCGAGGGAACAAGAGATTAAAGCATAGTGAGACCCTA 81
Query 130 --A-AGAGAGAGAGCTTTAGGTCTAGAGGGGATC-TTCACAATTCACACA-ACAACTACG 184
| |||||||||||||||||||||||| | ||| |||| | || ||| | ||||||
Sbjct 82 AGAGAGAGAGAGAGCTTTAGGTCTAGAGAGAATCAATCAC-A--CA-ACATA-AACTAC- 135
Query 185 AGATAGGATCGTGCGCGTCAAAAGAAGCTGGTACTGCTGATTCCAGCCGAAGATTAGTCT 244
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 136 -CATAGGATCGTGCGCGTCAAAAGAAGGTGGTGCTGCTGATTCCAGCCGAAGATTAGTCT 194
Query 245 CCGCTTCTGGTTGTTCCGGTGGAGACTCGTCGGAAATGAGAGGTCTTTTCAAATCCAAAC 304
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 195 CCGCTTCTGGTTGTTCCGGTGGAGACTCGGCGGACATGAGAGGTCTTTTCAAATCCAAAC 254
Query 305 CGCGGACTCCCGCTGATATTGTTCGTCAGACTCGCGATCTCCTCCTCTACGCCGATCGAT 364
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 255 CACGGACTCCCGCTGATATTGTTCGACAGACTCGCGATCTCCTCCTCTATGCCGATCGAT 314
Query 365 CCAACTCCTTCCCTGACCTTCGAGAGTCCAAACGCGAGGAAAAGATGGTGGAACTAAGTA 424
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 315 CCAACTCTTTCCCTGACCTTCGAGAGTCCAAACGCGAGGAAAAGCTGGTGGAACTAAGCA 374
Query 425 AGAGCATACGAGATTTGAAGTTGATTCTATATGGAAACAGTGAGGCTGAGCCTGTTGCTG 484
|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 375 AGAGCATACGAGATTTGAAGTTAATTCTCTATGGAAACAGTGAGGCTGAGCCTGTTTCTG 434
Query 485 AAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTAAGGCTGATACTCTTCGCCGTTTGCTCA 544
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 435 AAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTAAGGCTGATACTCTTCGCCGCTTGCTCA 494
Query 545 CTTCTCTTCCTAATTTGAACTTGGAGGCGAGGAAAGATGCTACACAAGTTGTTGCAAATC 604
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 495 CTTCTCTTCCTAATTTGAACTTGGAGGCCAGGAAAGATGCTACACAAGTTGTTGCAAATC 554
Query 605 TTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTG 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 555 TTCAGAGGCAACAAGTCAATTCACGTCTTATTGCTGCTGATTATCTTGAATCCAACATTG 614
Query 665 ATCTTATGGATTTTCTAGTTGATGGGTTTGAAAACACCGATATGGCGTTACACTATGGTA 724
||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 615 ATCTTATGGATTTTCTAGTCGATGGGTTCGAAAACACTGATATGGCGTTACACTATGGTA 674
Query 725 CTATGTTTAGAGAGTGCATCCGTCATCAGATTGTTGCAAAATATGTTTTGGACTCGGAGC 784
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 675 CTATGTTTAGAGAGTGCATCCGCCATCAGATTGTTGCAAAATATGTTTTGGACTCTCAGC 734
Query 785 ACGTGAAGAAGtttttttACTACATACAGCTTCCCAATTTCGACATTGCTGCTGATGCTG 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 ACGTGAAGAAGTTTTTTTACTACATACAGCTTCCCAATTTCGACATTGCTGCTGATGCTG 794
Query 845 CTGCAACTTTTAAGGAACTTCTGACAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTA 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 CTGCAACTTTTAAGGAACTTCTGACAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTA 854
Query 905 AGAATGAAGACTGGTTTTTTGCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATA 964
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 855 AGAATGAAGACTGGTTTTTTTCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATA 914
Query 965 TTACCCGACGGCAAGCTATTAAGTTGTTGGGCGATATATTATTGGATAGGTCAAATTCGG 1024
||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 915 TTACCAGACGGCAAGCTATTAAGTTGTTGGGTGATATATTATTGGATCGGTCAAATTCGG 974
Query 1025 CTGTGATGACGAAGTATGTGAGCTCGATGGATAACTTGAGGATTCTGATGAATCTTCTCA 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 CTGTGATGACGAAGTATGTGAGCTCGATGGATAACTTGAGGATTCTGATGAATCTTCTCA 1034
Query 1085 GAGAATCAAGCAAGACTATTCAGATAGAAGCTTTCCATGTTTTCAAGCTGTTTGTAGCGA 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1035 GAGAATCAAGCAAGACTATTCAGATAGAAGCTTTCCATGTTTTCAAGCTGTTTGTAGCGA 1094
Query 1145 ACCAAAACAAGCCTTCAGACATCGCCAACATTCTGGTGGCAAACAGAAACAAGCTTCTGA 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 ACCAAAACAAGCCTTCAGACATCGCCAACATTCTGGTGGCAAACAGAAACAAGCTTCTGA 1154
Query 1205 GATTGTTGGCTGATATCAAGCCGGACAAAGAGGACGAGAGGTTTGACGCAGACAAAGCTC 1264
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 1155 GATTGTTGGCTGATATCAAGCTGGACAAAGAGGACGAGAGGTTTGAAGCAGACAAAGCTC 1214
Query 1265 AGGTTGTGAGAGAGATTGCAAACCTTAAGCTGCGAGAGCTTGCTTGAGCATGCACATATA 1324
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1215 AGGTTGTGAGAGAGATTGCAAGCCTTAAGCTGCGAGAGCTTGCTTGAGCATGCACATATA 1274
Query 1325 CACAGAAGCTCATGATTTCTGTT-AATCTTTGAAAGACATTTTTGGACCATCAAAGATTG 1383
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1275 CACAGAAGCTCATGCTTTCTGTTTAATCTTTGAAAGACATTTTTGGACCATCAAAGATTG 1334
Query 1384 TTGTTATTTATTAGGTACTGTTTCTTTTCTCTCTCTCAGC 1423
||||||||||||||||||||||||| || |||||||||||
Sbjct 1335 TTGTTATTTATTAGGTACTGTTTCTCTT-TCTCTCTCAGC 1373
> Ahg948148 jgi|Araly1|948148|scaffold_800035.1
Length=1076
Score = 1112 bits (602), Expect = 0.0
Identities = 898/1042 (86%), Gaps = 16/1042 (2%)
Strand=Plus/Plus
Query 278 AAATGAGAGGTCTTTTCAAATCCAAACCGCGGACTCCCGCTGATATTGTTCGTCAGACTC 337
|||||| ||| |||||||| || || || || ||||| ||||| ||||||| || || |
Sbjct 20 AAATGAAAGGGCTTTTCAAGTCTAAGCCACGCACTCCTGCTGACCTTGTTCGACAAACGC 79
Query 338 GCGATCTCCTCCTCTACGCCGATCGATCCAACTCCTTCCCTGACCTTCGAGAGTCCAAAC 397
|||||||||| ||||||||||||||||| | ||| || |||||||| ||||| |||||||
Sbjct 80 GCGATCTCCTTCTCTACGCCGATCGATCTACCTCTTTGCCTGACCTCCGAGAATCCAAAC 139
Query 398 GCGAGGAAAAGATGGTGGAACTAAGTAAGAGCATACGAGATTTGAAGTTGATTCTATATG 457
|||| |||||||||| |||| |||| || || || || |||||| |||||| ||||
Sbjct 140 GCGAAGAAAAGATGGCGGAATTAAGCCGGAATATCCGTGACATGAAGTCGATTCTCTATG 199
Query 458 GAAACAGTGAGGCTGAGCCTGTTGCTGAAGCTTGTGCTCAGTTGACTCAGGAGTTCTTTA 517
|||||||||| || |||||||| |||||||||||||| ||||||||||| || |||||||
Sbjct 200 GAAACAGTGAAGCCGAGCCTGTCGCTGAAGCTTGTGCACAGTTGACTCAAGAATTCTTTA 259
Query 518 AGGCTGATACTCTTCGCCGT-TTGCTCACTTCTCTTCCT-AATTTGAACTTGGAGGCGAG 575
| | |||||||| || | | ||| | |||| ||| ||| || || ||||||||||| ||
Sbjct 260 AAGAGGATACTCTACGTC-TCTTGATTACTTGTCTCCCTAAACTT-AACTTGGAGGCTAG 317
Query 576 GAAAGATGCTACACAAGTTGTTGCAAATCTTCAGAGGCAACAAGTCAATTCAC-GTCTTA 634
|||||||||||||||||||||||||||||| ||||||||||| |||||||||| || | |
Sbjct 318 GAAAGATGCTACACAAGTTGTTGCAAATCTACAGAGGCAACAGGTCAATTCACGGT-TGA 376
Query 635 TTGC-TGCTGATTATCTTGAATCCAACATTGATCTTATGGAT-TTTCTAG-TTGATGGGT 691
|||| | |||||||||||||| ||||||||||||| |||||| ||| | | |||| || |
Sbjct 377 TTGCAT-CTGATTATCTTGAAGCCAACATTGATCTCATGGATGTTT-T-GATTGAAGGCT 433
Query 692 TTGAAAACACCGATATGGCGTTACACTATGGTACTATGTTTAGAGAGTGCATCCGTCATC 751
| || ||||| || ||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 434 TCGAGAACACAGACATGGCTTTACACTATGGGGCTATGTTTAGAGAGTGCATCCGTCATC 493
Query 752 AGATTGTTGCAAAATATGTTTTGGACTCGGAGCACGTGAAGAAGtttttttACTACATAC 811
||||||| || |||||||||||||| || || ||||||||||| || || | |||||||
Sbjct 494 AGATTGTGGCTAAATATGTTTTGGAGTCTGACCACGTGAAGAACTTCTTCGATTACATAC 553
Query 812 AGCTTCCCAATTTCGACATTGCTGCTGATGCTGCTGCAACTTTTAAGGAACTTCTGACAA 871
||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 554 AGCTTCCTAATTTCGACATTGCTGCTGATGCTGCTGCTACTTTTAAGGAACTGCTGACAA 613
Query 872 GGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGTTTTTTGCAGACT 931
|||| || ||||| ||||| |||||||||| |||||||||||||||||||| |||||||
Sbjct 614 GGCATAAATCTACTGTTGCCGAGTTTCTCACCAAGAATGAAGACTGGTTTTTCGCAGACT 673
Query 932 ACAACTCAAAGCTTCTTGAATCAACTAATTATATTACCCGACGGCAAGCTATTAAGTTGT 991
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||
Sbjct 674 ACAACTCAAAGCTTCTTGAATCAAGTAATTATATAACCAGACGGCAAGCTATTAAGTTGT 733
Query 992 TGGGCGATATATTATTGGATAGGTCAAATTCGGCTGTGATGACGAAGTATGTGAGCTCGA 1051
|||| ||||||||| ||||| | |||||||| |||||||||||||| ||||||||||| |
Sbjct 734 TGGGTGATATATTACTGGATCGATCAAATTCAGCTGTGATGACGAAATATGTGAGCTCAA 793
Query 1052 TGGATAACTTGAGGATTCTGATGAATCTTCTCAGAGAATCAAGCAAGACTATTCAGATAG 1111
|||||||||||||||||| ||||||||||| ||||| |||||||||| ||| || ||||
Sbjct 794 GGGATAACTTGAGGATTCTCATGAATCTTCTGAGAGAGTCAAGCAAGAGTATCCAAATAG 853
Query 1112 AAGCTTTCCATGTTTTCAAGCTGTTTGTAGCGAACCAAAACAAGCCTTCAGACATCGCCA 1171
|||| |||||||| ||||||||||||| ||||||||||||||||||| | || || | ||
Sbjct 854 AAGCATTCCATGTCTTCAAGCTGTTTGCAGCGAACCAAAACAAGCCTGCGGATATAGTCA 913
Query 1172 ACATTCTGGTGGCAAACAGAAACAAGCTTCTGAGATTGTTGGCTGATATCAAGCCGGACA 1231
||||| ||||||| ||||||| ||||||||||||||||||||||||| | || || || |
Sbjct 914 ACATTTTGGTGGCCAACAGAAGCAAGCTTCTGAGATTGTTGGCTGATTTGAAACCAGATA 973
Query 1232 AAGAGGACGAGAGGTTTGACGCAGACAAA-GCTCAGGTTGTGAGAGAGATTGCAAACCTT 1290
||||||| ||||||||||| ||||||||| | ||||||| ||||||| || ||| ||||
Sbjct 974 AAGAGGATGAGAGGTTTGAAGCAGACAAAAG-TCAGGTTTTGAGAGAAATCGCAGCCCTT 1032
Query 1291 -AAGCTGCGAGAGCTTGCTTGA 1311
|| | ||||| |||||||||
Sbjct 1033 GAACCA-CGAGATCTTGCTTGA 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5