BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17280.1
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890493 jgi|Araly1|890493|Al_scaffold_0007_2479 1875 0.0
Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1 91.6 2e-17
> Ahg890493 jgi|Araly1|890493|Al_scaffold_0007_2479
Length=1194
Score = 1875 bits (1015), Expect = 0.0
Identities = 1133/1191 (95%), Gaps = 3/1191 (0%)
Strand=Plus/Plus
Query 134 ATGAAGTTCTTGAATCAAATCCTCTGTCTCTCTCTTATCCTCTCCATATCCAT--G-ACT 190
|||||||||||||||||||||||||||||||| ||| |||| ||||||||||| | | |
Sbjct 4 ATGAAGTTCTTGAATCAAATCCTCTGTCTCTCGCTTGTCCTTTCCATATCCATGAGTAGT 63
Query 191 ACTCTTTCCTTTGCTCAGACATGTTCTAAATACAAGTTCTCCAGCAACAATGTCTTTGAC 250
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 64 ACTCTTTCCTTTGCTCAGACATGTTCTAACTACAAGTTCTCAAGCAACAATGTCTTTGAC 123
Query 251 TCTTGCAACGATCTTCCTTTTCTTGATTCCTTCCTCCATTACACTTACGAGTCTTCCACC 310
|| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 124 TCCTGCAACGACCTCCCTTTTCTTGATTCTTTCCTCCATTACACTTACGAGTCTTCCACC 183
Query 311 GGGAGCCTCCACATTGCTTATCGCCACACTAAGCTCACCTCTGGTAAATGGGTTGCTTGG 370
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 184 GGGAGCCTCCACATCGCTTATCGCCACACTAAGCTCACCTCTGGCAAATGGGTTGCTTGG 243
Query 371 GCTGTGAACCCAACGTCTACGGGAATGGTGGGAGCTCAAGCCATCGTTGCTTATCCACAA 430
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 244 GCCGTGAACCCAACGTCTACGGGAATGGTGGGAGCTCAAGCCATCGTGGCTTATCCACAA 303
Query 431 TCAGATGGTACTGTCAGGGTTTACACTTCTCCCATCAGAAGCTACCAGACGAGTCTACTA 490
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
Sbjct 304 ACAGATGGTACTGTCAGGGTTTACACATCTCCCATCAGAAGCTACCAGACGAGCCTACAA 363
Query 491 GAGGGTGATCTGAGTTTCAATGTCTCTGGTTTGTCTGCAACTTACCAGAACAATGAGATC 550
||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 364 GAGGGTGATCTCAGTTTCAACGTCTCTGGGTTGTCTGCAACTTATGAGAACAATGAGATT 423
Query 551 GTTGTGTTGGCAAGTCTGAAGCTTGCACAGGATCTTGGGAATGGTGGAACCATTAACACA 610
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 424 GTTGTGCTGGCAAGTCTGAAGCTTTCACAGGATCTTGGGAATGGTGGAACCATTAACACA 483
Query 611 GTGTGGCAAGATGGGTCAATGTCTGGGAACAGTCTTCTGCCTCATCCAACTTCTGGCAAC 670
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 484 GTGTGGCAAGATGGGCCAATGTCTGGGAACAGTCTTTTGCCTCATCCAACTTCTGGCAAC 543
Query 671 AATGTTCGATCAGTGTCAACTCTCAATCTGGTATCCGGTGTTTCAGCAGCTGCAGGAGGA 730
||||||||||| |||| |||||||||||||| |||||||||||||||||||| ||||||
Sbjct 544 AATGTTCGATCCCTGTCCACTCTCAATCTGGTCTCCGGTGTTTCAGCAGCTGCTGGAGGA 603
Query 731 GCTGGAGGAAGTTCCAAGCTTCGCAAACGCAATATTCATGGAATATTGAATGGAGTGAGC 790
||||||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||
Sbjct 604 GCTGGAGGAAGTTCCAAGCTTCGAAAACGCAACATACATGGAATATTGAATGGTGTGAGC 663
Query 791 TGGGGAATCATGATGCCACTAGGGGCAATCATTGCTCGATACTTGAGAGTAGCCAAATCA 850
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TGGGGAATCATGATGCCAATAGGGGCAATCATTGCTCGATACTTGAGAGTAGCCAAATCA 723
Query 851 GCAGACCCTGCTTGGTTCTACATTCACGTTTTCTGCCAGGCTTCTGCTTACATCATCGGT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 GCAGACCCTGCTTGGTTCTACATTCACGTTTTCTGCCAGGCTTCTGCTTACATCATCGGT 783
Query 911 GTTGCCGGATGGGCCACTGGTCTCAAACTCGGTGGCGACTCACCAGGGATTCAGTACAGC 970
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct 784 GTTGCCGGATGGGCCACAGGTCTCAAACTCGGTGGCGACTCACCAGGAATTCAGTATAGC 843
Query 971 ACCCACCGTGCCATCGGGATCGCTCTCTTCTCTCTAGCGACAGTTCAGGTGTTTGCGATG 1030
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 ACCCACCGTGCTATCGGGATCGCTCTCTTCTCTCTAGCGACAGTTCAGGTGTTTGCGATG 903
Query 1031 TTTCTGAGGCCAAAACCAGAGCACAAGCATAGGCTCTACTGGAACATTTACCACCACACG 1090
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 904 TTTCTGAGGCCAAAACCAGAGCACAAGCATAGGCTCTACTGGAACATTTACCACCATACG 963
Query 1091 ATCGGCTACACGATAATCATCCTAGGGGTGGTGAACGTTTTCAAAGGGCTAGGCATATTG 1150
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 964 ATCGGCTACACTATAATCATCCTAGGGGTGGTTAACGTTTTCAAAGGGCTAGGCATATTG 1023
Query 1151 AGTCCCAAGAAGCAGTGGAAAAATGCCTACATCGGTATCATTGTTGTTCTCGCCATTGTG 1210
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||
Sbjct 1024 AGTCCCAAGAAGCAGTGGAAAAATGCTTACATTGGTATCATTGTTGCTCTCGCCATTGTG 1083
Query 1211 GCCACCCTACTCGAAGCCTTCACCTGGTATGTAGTCATTAAAAGAAGGAAACTGGAGGCT 1270
|||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1084 GCCACCGTACTCGAAGCCTTCACTTGGTATGTAGTCATTAAGAGAAGGAAACTGGAGGCC 1143
Query 1271 AAAACGGCTCAGCATGGAGCATCTAACGGCACTCGGTCTCAGTATGCTTAA 1321
||||||||||||||||||||||| |||||| ||||||| ||||||||||||
Sbjct 1144 AAAACGGCTCAGCATGGAGCATCCAACGGCGCTCGGTCACAGTATGCTTAA 1194
> Ahg493148 jgi|Araly1|493148|fgenesh2_kg.7__2581__AT4G17270.1
Length=1430
Score = 91.6 bits (49), Expect = 2e-17
Identities = 54/56 (96%), Gaps = 1/56 (2%)
Strand=Plus/Minus
Query 1528 GCTGAGAGAGAGAAAAGAAACAGTACCTAATAAATAACAACAATCTTTGATGGTCC 1583
||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 GCTGAGAGAGA-AAGAGAAACAGTACCTAATAAATAACAACAATCTTTGATGGTCC 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59306511465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5