BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17300.1
Length=1865
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946502 jgi|Araly1|946502|scaffold_702731.1 2678 0.0
> Ahg946502 jgi|Araly1|946502|scaffold_702731.1
Length=1748
Score = 2678 bits (1450), Expect = 0.0
Identities = 1643/1737 (95%), Gaps = 9/1737 (1%)
Strand=Plus/Plus
Query 12 CGATTACAATGGCGGCCACGTTTCTGCCGGCGACATCTCTCCGTCTAACTCAAAACTCTA 71
||| ||||||||||||| |||||||||||||||| |||||||||||||||| | ||||||
Sbjct 16 CGACTACAATGGCGGCCGCGTTTCTGCCGGCGACGTCTCTCCGTCTAACTCCATACTCTA 75
Query 72 CTCTCCGCTTCTTATCATTCTTCACCATTTCTAACCCTTCTTATTCTCTCTTCCGTCCTC 131
||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| ||||
Sbjct 76 CTCTCCGCTTCTTATCATTCTTCTCCATTTCTAATCCTTCTTATTCACTCTTCCGCCCTC 135
Query 132 TACGCCGCCGTGTTCTCCCTCCCT-TCGATGCTTTTCCGGCCAATTCTCGCCGGAGATGC 190
|||||| ||| |||||||| | | | |||||||||||| |||||||||||||||||||
Sbjct 136 TACGCCACCGAGTTCTCCC-GCTTATTGATGCTTTTCCGACCAATTCTCGCCGGAGATGT 194
Query 191 TTTTGCACAGCTGTTTCGGAATCTCTCGGCTCCGGTGATGGAAATAAAGTTGA-GAGTTA 249
|||||| |||||||||| ||||||||||| || || || |||||||||||||| | ||
Sbjct 195 TTTTGCTCAGCTGTTTCCGAATCTCTCGGTTCTGGAGAGGGAAATAAAGTTGATAACTT- 253
Query 250 CGAGAAACGATTTGGGAGTAAAGTTGGAGAATTCAGGAAAAAGTTGAGGATAGCTGAAGT 309
||||| |||||||| ||||||||||||||||||||||| ||||||| |||||| |||||
Sbjct 254 TGAGAAGCGATTTGGAAGTAAAGTTGGAGAATTCAGGAAGAAGTTGAAGATAGCAGAAGT 313
Query 310 GAAAGGAGGAGCGGACGAAGGACT-GAGTCGGGTCGGGCAGAGCCTTAACATTATGGGTT 368
|||||||||||| |||||||| || | |||| || |||||||||||||||||||||||||
Sbjct 314 GAAAGGAGGAGCAGACGAAGGGCTCG-GTCGCGTTGGGCAGAGCCTTAACATTATGGGTT 372
Query 369 GGGTTCGTACACTTCGATCTCAGAGCAGTGTCACATTCATTGAGATAAATGATGGTTCAT 428
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 373 GGGTCCGTACACTTCGGTCTCAAAGCAGTGTCACATTCATTGAGATAAATGATGGTTCAT 432
Query 429 GCTTATCGAATTTGCAATGTGTGATGACTTCGGATGCAGAAGGGTATGATCAGGTAGAAT 488
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 433 GCTTATCGAATTTGCAATGTGTGATGAATTCGGATGCAGATGGGTATGATCAGGTAGAAT 492
Query 489 CTGGTTCGATCTTGACTGGAGCATCAGTATCTGTACAAGGTACTATTGTAGCTAGCCAGG 548
|||||| |||||||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 493 CTGGTTTGATCTTGACTGGAGCATCCGTATCGGTACAAGGTACTATTGTGGCTAGCCAGG 552
Query 549 GAACGAAGCAAAAAGTGGAACTTAAGGTGGAGAAAATCATTGTGGTTGGAGAGTGTGACT 608
|||| |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct 553 GAACAAAGCAAAAGGTGGAACTTAAGGTTGAGAAAATCATTGTGGTTGGAAAGTGTGACT 612
Query 609 CTTCCTATCCGATCCAGAAGAAAAGGGTCAGCCGGGAATTCTTGAGAACCAAGGCTCATT 668
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 613 CTTCCTATCCGATCCAGAAGAAAAGGGTCACCCGGGAATTCTTGAGAACCAAGGCTCATT 672
Query 669 TACGTCCTAGAACCAACACTTTTGGGGCGGTGGCAAGAGTTAGGAATACTCTGGCATATG 728
||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 673 TACGTCCAAGAACCAATACTTTTGGGGCGGTGGCGAGAGTTAGGAATACTCTGGCATATG 732
Query 729 CTACACACAAGTTCTTTCAAGAAAGTGGATTTGTCTGGGTGGCAAGCCCAATTATCACAG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 CTACACACAAGTTCTTTCAAGAAAGTGGATTTGTCTGGGTGGCAAGCCCAATTATCACAG 792
Query 789 CTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTTATTCCTAGCTCCC 848
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 793 CGTCGGATTGTGAAGGAGCTGGAGAACAGTTCTGTGTCACTACACTTATTCCCAGCTCCC 852
Query 849 ATGAGAACACCGATACTTCCATTGATGCGATTCCGAAAACAAAGGGAGGGTTGATCGATT 908
|||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 853 ATGAGAACACCGATACTTCCATTGATGCAATTCCGAAAACAAAGGGAGGGTTAATTGATT 912
Query 909 GGTCTCAGGACTTTTTTGGGAAACCAGCATTCTTAACCGTCTCTGGGCAACTTAATGGAG 968
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 913 GGTCTCAGGACTTCTTTGGGAAACCAGCATTCTTAACAGTCTCTGGGCAACTCAATGGAG 972
Query 969 AAACTTATGCAACCGCTCTCTCAGATGTATACACATTTGGTCCTACATTTCGAGCTGAGA 1028
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 973 AAACTTATGCAACCGCTCTCTCAGATGTATACACATTTGGTCCAACATTTCGAGCTGAGA 1032
Query 1029 ATTCCAACACGTCAAGGCACTTAGCCGAATTCTGGATGATTGAACCAGAACTTGCTTTTG 1088
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 ATTCCAACACGTCCAGGCACTTAGCCGAATTCTGGATGATTGAACCAGAACTTGCTTTTG 1092
Query 1089 CCGACCTGGATGATGACATGGCCTGTGCCACTGCCTACCTCCAGTACGTAGTAAAGTACG 1148
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1093 CCGACCTGGACGATGACATGGCCTGTGCCACCGCCTACCTCCAGTACGTAGTAAAATACG 1152
Query 1149 TTCTTGATAATTGCAAGGAAGACATGGAGTTTTTCGATACATGGATTGAGAAAGGAATCA 1208
||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1153 TTCTTGACAATTGCAAGGAAGACATGGAGTTTTTTGATACATGGATTGAGAAAGGAATTA 1212
Query 1209 TTCGCCGCTTGAGTGACGTAGCTGAGAAAGAGTTTCTACAGCTGGGGTACACAGACGCCA 1268
|||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1213 TTCGTCGCTTGAGCGACGTAGCTGAGAAAGAGTTTCTACAGCTGGCTTACACAGACGCCA 1272
Query 1269 TTGAAATTCTTCTGAAAGCAAACAAAAAATTCGATTTTCCGGTGAAGTGGGGGCTGGATC 1328
||||| |||||||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct 1273 TTGAAGTTCTTCTGAAAGCAAACAGAAAATTTGATTTTCCGGTGAAGTGGGGGTTGGATC 1332
Query 1329 TGCAGAGTGAGCATGAAAGGTACATAACAGAAGAGGCTTTTGGGGGTCGACCTGTGATAA 1388
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1333 TGCAGAGTGAGCATGAAAGGTACATAACAGAAGAGGCATTTGGGGGTCGCCCTGTGATAA 1392
Query 1389 TAAGAGACTATCCGAAGGAGATCAAAGCATTCTATATGCGGGAGAACGATGATGGGAAGA 1448
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||
Sbjct 1393 TAAGAGACTATCCGAAGGAGATAAAAGCATTCTATATGCGAGAGAACGATGATGGAAAGA 1452
Query 1449 CAGTGGCAGCAATGGATATGCTTGTGCCTCGGATAGGAGAGCTGATAGGTGGAAGCCAAA 1508
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1453 CAGTGGCAGCAATGGATATGCTCGTGCCTCGGATAGGAGAGCTGATAGGTGGAAGCCAAA 1512
Query 1509 GAGAGGAAAGGCTTGAGGTGTTGGAAGCGAGGCTTGATGAGTTGAAACTCAACAAAGAGA 1568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 GAGAGGAAAGGCTTGAGGTGTTGGAAGCGAGGCTTGATGAGTTGAAACTCAACAAAGAGA 1572
Query 1569 GCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAGTTCCTCATGCAGGATTTGGAC 1628
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1573 GCTACTGGTGGTACCTCGACCTTCGCCGCTATGGTTCAGTTCCTCATGCAGGATTTGGAC 1632
Query 1629 TAGGGTTTGAGAGACTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTC 1688
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 TAGGGTTTGAGAGGCTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTC 1692
Query 1689 CTTTCCCGCGCACACCTGCCTCTGCTGAATTCTGATACTCGAC-CCTCTCATTGCTC 1744
||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||
Sbjct 1693 CTTTCCCGCGCACACCTGCCTCTGCTGAATTCTGATACTCGACTCCCC-CAT-GCTC 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70047960555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5