BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17300.1 Length=1865 Score E Sequences producing significant alignments: (Bits) Value Ahg946502 jgi|Araly1|946502|scaffold_702731.1 2678 0.0 > Ahg946502 jgi|Araly1|946502|scaffold_702731.1 Length=1748 Score = 2678 bits (1450), Expect = 0.0 Identities = 1643/1737 (95%), Gaps = 9/1737 (1%) Strand=Plus/Plus Query 12 CGATTACAATGGCGGCCACGTTTCTGCCGGCGACATCTCTCCGTCTAACTCAAAACTCTA 71 ||| ||||||||||||| |||||||||||||||| |||||||||||||||| | |||||| Sbjct 16 CGACTACAATGGCGGCCGCGTTTCTGCCGGCGACGTCTCTCCGTCTAACTCCATACTCTA 75 Query 72 CTCTCCGCTTCTTATCATTCTTCACCATTTCTAACCCTTCTTATTCTCTCTTCCGTCCTC 131 ||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||| Sbjct 76 CTCTCCGCTTCTTATCATTCTTCTCCATTTCTAATCCTTCTTATTCACTCTTCCGCCCTC 135 Query 132 TACGCCGCCGTGTTCTCCCTCCCT-TCGATGCTTTTCCGGCCAATTCTCGCCGGAGATGC 190 |||||| ||| |||||||| | | | |||||||||||| ||||||||||||||||||| Sbjct 136 TACGCCACCGAGTTCTCCC-GCTTATTGATGCTTTTCCGACCAATTCTCGCCGGAGATGT 194 Query 191 TTTTGCACAGCTGTTTCGGAATCTCTCGGCTCCGGTGATGGAAATAAAGTTGA-GAGTTA 249 |||||| |||||||||| ||||||||||| || || || |||||||||||||| | || Sbjct 195 TTTTGCTCAGCTGTTTCCGAATCTCTCGGTTCTGGAGAGGGAAATAAAGTTGATAACTT- 253 Query 250 CGAGAAACGATTTGGGAGTAAAGTTGGAGAATTCAGGAAAAAGTTGAGGATAGCTGAAGT 309 ||||| |||||||| ||||||||||||||||||||||| ||||||| |||||| ||||| Sbjct 254 TGAGAAGCGATTTGGAAGTAAAGTTGGAGAATTCAGGAAGAAGTTGAAGATAGCAGAAGT 313 Query 310 GAAAGGAGGAGCGGACGAAGGACT-GAGTCGGGTCGGGCAGAGCCTTAACATTATGGGTT 368 |||||||||||| |||||||| || | |||| || ||||||||||||||||||||||||| Sbjct 314 GAAAGGAGGAGCAGACGAAGGGCTCG-GTCGCGTTGGGCAGAGCCTTAACATTATGGGTT 372 Query 369 GGGTTCGTACACTTCGATCTCAGAGCAGTGTCACATTCATTGAGATAAATGATGGTTCAT 428 |||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 373 GGGTCCGTACACTTCGGTCTCAAAGCAGTGTCACATTCATTGAGATAAATGATGGTTCAT 432 Query 429 GCTTATCGAATTTGCAATGTGTGATGACTTCGGATGCAGAAGGGTATGATCAGGTAGAAT 488 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 433 GCTTATCGAATTTGCAATGTGTGATGAATTCGGATGCAGATGGGTATGATCAGGTAGAAT 492 Query 489 CTGGTTCGATCTTGACTGGAGCATCAGTATCTGTACAAGGTACTATTGTAGCTAGCCAGG 548 |||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||||||| Sbjct 493 CTGGTTTGATCTTGACTGGAGCATCCGTATCGGTACAAGGTACTATTGTGGCTAGCCAGG 552 Query 549 GAACGAAGCAAAAAGTGGAACTTAAGGTGGAGAAAATCATTGTGGTTGGAGAGTGTGACT 608 |||| |||||||| |||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 553 GAACAAAGCAAAAGGTGGAACTTAAGGTTGAGAAAATCATTGTGGTTGGAAAGTGTGACT 612 Query 609 CTTCCTATCCGATCCAGAAGAAAAGGGTCAGCCGGGAATTCTTGAGAACCAAGGCTCATT 668 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 613 CTTCCTATCCGATCCAGAAGAAAAGGGTCACCCGGGAATTCTTGAGAACCAAGGCTCATT 672 Query 669 TACGTCCTAGAACCAACACTTTTGGGGCGGTGGCAAGAGTTAGGAATACTCTGGCATATG 728 ||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 673 TACGTCCAAGAACCAATACTTTTGGGGCGGTGGCGAGAGTTAGGAATACTCTGGCATATG 732 Query 729 CTACACACAAGTTCTTTCAAGAAAGTGGATTTGTCTGGGTGGCAAGCCCAATTATCACAG 788 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 733 CTACACACAAGTTCTTTCAAGAAAGTGGATTTGTCTGGGTGGCAAGCCCAATTATCACAG 792 Query 789 CTTCGGATTGTGAAGGAGCAGGAGAACAGTTCTGTGTCACTACACTTATTCCTAGCTCCC 848 | ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| Sbjct 793 CGTCGGATTGTGAAGGAGCTGGAGAACAGTTCTGTGTCACTACACTTATTCCCAGCTCCC 852 Query 849 ATGAGAACACCGATACTTCCATTGATGCGATTCCGAAAACAAAGGGAGGGTTGATCGATT 908 |||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| Sbjct 853 ATGAGAACACCGATACTTCCATTGATGCAATTCCGAAAACAAAGGGAGGGTTAATTGATT 912 Query 909 GGTCTCAGGACTTTTTTGGGAAACCAGCATTCTTAACCGTCTCTGGGCAACTTAATGGAG 968 ||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 913 GGTCTCAGGACTTCTTTGGGAAACCAGCATTCTTAACAGTCTCTGGGCAACTCAATGGAG 972 Query 969 AAACTTATGCAACCGCTCTCTCAGATGTATACACATTTGGTCCTACATTTCGAGCTGAGA 1028 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 973 AAACTTATGCAACCGCTCTCTCAGATGTATACACATTTGGTCCAACATTTCGAGCTGAGA 1032 Query 1029 ATTCCAACACGTCAAGGCACTTAGCCGAATTCTGGATGATTGAACCAGAACTTGCTTTTG 1088 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 ATTCCAACACGTCCAGGCACTTAGCCGAATTCTGGATGATTGAACCAGAACTTGCTTTTG 1092 Query 1089 CCGACCTGGATGATGACATGGCCTGTGCCACTGCCTACCTCCAGTACGTAGTAAAGTACG 1148 |||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1093 CCGACCTGGACGATGACATGGCCTGTGCCACCGCCTACCTCCAGTACGTAGTAAAATACG 1152 Query 1149 TTCTTGATAATTGCAAGGAAGACATGGAGTTTTTCGATACATGGATTGAGAAAGGAATCA 1208 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 1153 TTCTTGACAATTGCAAGGAAGACATGGAGTTTTTTGATACATGGATTGAGAAAGGAATTA 1212 Query 1209 TTCGCCGCTTGAGTGACGTAGCTGAGAAAGAGTTTCTACAGCTGGGGTACACAGACGCCA 1268 |||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1213 TTCGTCGCTTGAGCGACGTAGCTGAGAAAGAGTTTCTACAGCTGGCTTACACAGACGCCA 1272 Query 1269 TTGAAATTCTTCTGAAAGCAAACAAAAAATTCGATTTTCCGGTGAAGTGGGGGCTGGATC 1328 ||||| |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| Sbjct 1273 TTGAAGTTCTTCTGAAAGCAAACAGAAAATTTGATTTTCCGGTGAAGTGGGGGTTGGATC 1332 Query 1329 TGCAGAGTGAGCATGAAAGGTACATAACAGAAGAGGCTTTTGGGGGTCGACCTGTGATAA 1388 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 1333 TGCAGAGTGAGCATGAAAGGTACATAACAGAAGAGGCATTTGGGGGTCGCCCTGTGATAA 1392 Query 1389 TAAGAGACTATCCGAAGGAGATCAAAGCATTCTATATGCGGGAGAACGATGATGGGAAGA 1448 |||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||| Sbjct 1393 TAAGAGACTATCCGAAGGAGATAAAAGCATTCTATATGCGAGAGAACGATGATGGAAAGA 1452 Query 1449 CAGTGGCAGCAATGGATATGCTTGTGCCTCGGATAGGAGAGCTGATAGGTGGAAGCCAAA 1508 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1453 CAGTGGCAGCAATGGATATGCTCGTGCCTCGGATAGGAGAGCTGATAGGTGGAAGCCAAA 1512 Query 1509 GAGAGGAAAGGCTTGAGGTGTTGGAAGCGAGGCTTGATGAGTTGAAACTCAACAAAGAGA 1568 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1513 GAGAGGAAAGGCTTGAGGTGTTGGAAGCGAGGCTTGATGAGTTGAAACTCAACAAAGAGA 1572 Query 1569 GCTACTGGTGGTACCTCGACCTCCGCCGCTATGGTTCAGTTCCTCATGCAGGATTTGGAC 1628 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1573 GCTACTGGTGGTACCTCGACCTTCGCCGCTATGGTTCAGTTCCTCATGCAGGATTTGGAC 1632 Query 1629 TAGGGTTTGAGAGACTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTC 1688 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1633 TAGGGTTTGAGAGGCTGGTCCAATTTGTCACCGGAATTGATAATATCAGAGACGTTATTC 1692 Query 1689 CTTTCCCGCGCACACCTGCCTCTGCTGAATTCTGATACTCGAC-CCTCTCATTGCTC 1744 ||||||||||||||||||||||||||||||||||||||||||| || | ||| |||| Sbjct 1693 CTTTCCCGCGCACACCTGCCTCTGCTGAATTCTGATACTCGACTCCCC-CAT-GCTC 1747 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70047960555 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5