BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17310.1
Length=656
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493145 jgi|Araly1|493145|fgenesh2_kg.7__2578__AT4G17310.1 846 0.0
> Ahg493145 jgi|Araly1|493145|fgenesh2_kg.7__2578__AT4G17310.1
Length=568
Score = 846 bits (458), Expect = 0.0
Identities = 535/571 (94%), Gaps = 10/571 (2%)
Strand=Plus/Plus
Query 42 TCGATCACATCGTCGTGTTTCTTCTTCTCTTTGATAACAATGGCTTCTGCTTGTCGTAAG 101
|||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||||||
Sbjct 1 TCGATCACATGGTCGTGTTTCGTCTTCTC--TGATAATAATGGCTTCTGCTTGTCGTAAG 58
Query 102 CTTTTTAACAGAGCTTCCGTCTCTTCCCTCAAATCTACCCTCAGATCAACCACCGGATCT 161
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 59 CTCTTTAACAGAGCTTCCGTCTCTTCCCTCAAATCCGCCCTCAGATCAACCACCGGATCT 118
Query 162 ACGTCGGCTGCGTCATCAGCCGGATTTCGTCTTCCTTCTCAACCCACTCGCCATTTCTCC 221
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 119 GCACCGGCTGCGTCATCAGCCGGATTTCGTCTTCCTTCTCAACCCTCTCGCCATTTCTCC 178
Query 222 TTCTCCAGATGTCCTTCGGAGCTGGGATGTGTTCAGTCGCTGTTACCGCTGCACAGCACG 281
|||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 179 TTCTCCAGGTGTCCGTCGGAGCTGGGATGTGTTCAGTCTCTGTTACCGCTGCACAGCACG 238
Query 282 GTGGCGGCGGCGAGGCTGACGTCATGTCTAAGCACAACTTCAAGGAGTAGCCGAGCTCTC 341
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 239 GTGGCGGCGGCGAGGCTGACGTCATGTTTAAGCACAACCTCAAGGAGTAGCCGAGCTCTC 298
Query 342 TCTCAGGGTACACTCTGCTGCACCTCTCCCGATCTCTAATGCTTTTCTCTTTACTTTTCT 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TCTCAGGGTACACTCTGCTGCACCTCTCCCGATCTCTAATGCTTTTCTCTTTACTTTTCT 358
Query 402 T---A----ACTTGGCCTTTCAGTTCCAAGGTGACTCAAAAACCCTCATGAAGGTGAACC 454
| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 359 TGTGAGTTCACTTGGCCTTTCAGTTCCAAGGTGACTCAAAAACCGTCATGAAGGTTAACC 418
Query 455 ATGGAATTATGAAAGGGGCAGGATCACAAAGAGTTGTTTCTTTTCTTCCCTTTGTCAAAC 514
||| ||| ||||||||| ||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 419 ATGTAATGATGAAAGGGCCAGGATCTCAAAGAGTTGTTTCTTTTCTTTCCTTTGTCAAAC 478
Query 515 TTATAGAAAAGAAGTGTCTGTCATTCTTTTTGTGACATATAAGTATTATTGATTACACAA 574
||| ||||||||||||||||||||||||||||||||| |||||||| |||| ||||| ||
Sbjct 479 TTAGAGAAAAGAAGTGTCTGTCATTCTTTTTGTGACAAATAAGTATCATTGGTTACA-AA 537
Query 575 TCTCATGTACTTTGATTTATGATGAGAGAAA 605
|||||||||||||||||||||||||||||||
Sbjct 538 TCTCATGTACTTTGATTTATGATGAGAGAAA 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24055560627
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5