BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17340.1
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493143 jgi|Araly1|493143|fgenesh2_kg.7__2576__AT4G17340.1 1509 0.0
> Ahg493143 jgi|Araly1|493143|fgenesh2_kg.7__2576__AT4G17340.1
Length=960
Score = 1509 bits (817), Expect = 0.0
Identities = 913/960 (95%), Gaps = 3/960 (0%)
Strand=Plus/Plus
Query 12 AAATAACTTGTAATCAACCAAAGTCGAAAAACAGAGTTATTTTGTCGGATCAAAATGGTG 71
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 2 AAATAACTTGTAATCAACCAAAGTCGAAAAACAGAGCTATCTTGTCGGATCAAAATGGTG 61
Query 72 AAGATTGAGATAGGAAGTGTGGGTGACTCCTTTAGTGTAGCATCTCTTAAGGCTTACTTG 131
||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 62 AAGATTGAGATTGGAAGTTTGGGTGACTCCTTTAGTGTAGCCTCTCTTAAGGCTTACTTG 121
Query 132 TCTGAATTTATCGCAACTCTTCTCTTTGTGTTTGCTGGCGTTGGCTCTGCTCTTGCTTTT 191
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 122 TCTGAATTTATTGCAACTCTTCTCTTTGTGTTTGCTGGCGTTGGTTCTGCTCTTGCTTTT 181
Query 192 GCCAAGCTCACATCCGATGCAGCCTTGGACCCCGCTGGTCTTGTCGCTGTCGCTGTGGCT 251
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 182 GCCAAGCTCACATCCGATGCAGCCTTGGACCCGGCTGGTCTTGTCGCTGTTGCTGTGGCT 241
Query 252 CACGCCTTTGCCCTTTTCGTTGGTGTTTCCATAGCCGCCAACATCTCCGGCGGACACCTT 311
||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||
Sbjct 242 CACGCCTTTGCCCTTTTTGTCGGTGTTTCCATAGCCGCCAACATCTCTGGTGGACACCTT 301
Query 312 AACCCCGCCGTGACACTCGGTCTCGCCGTCGGTGGCAACATCACAGTAATAACCGGTTTC 371
||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 302 AACCCTGCCGTGACACTCGGCCTCGCCATCGGTGGCAACATCACAGTAATAACCGGTTTC 361
Query 372 TTTTACTGGATTGCTCAATGCCTTGGCTCCATCGTCGCGTGTCTCCTCCTCGTCTTCGTT 431
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 362 TTCTACTGGATTGCTCAATGCCTTGGCTCCATCGTCGCTTGTCTCCTCCTCGTCTTCGTG 421
Query 432 ACCAATGGCGAGAGCGTACCGACTCATGGAGTAGCGGCCGGTTTAGGAGCTATTGAAGGA 491
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 422 ACCAATGGCGAGAGCGTACCGACTCATGGAGTTGCAGCCGGTTTAGGAGCTATTGAAGGA 481
Query 492 GTAGTGATGGAGATTGTGGTGACCTTTGCTCTGGTCTACACAGTCTACGCCACAGCGGCT 551
|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 482 CTAGTGATGGAGATTGTGGTGACCTTTGCTCTGGTGTACACAGTCTACGCTACAGCGGCT 541
Query 552 GATCCAAAGAAAGGTTCACTCGGGACCATTGCTCCAATTGCTATCGGTTTCATCGTTGGT 611
|||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 542 GATCCAAAGAAAGGATCACTCGGGACCATAGCTCCGATTGCTATCGGTTTCATCGTTGGT 601
Query 612 GCCAACATCCTCGCAGCGGGTCCCTTTAGCGGTGGTTCCATGAACCCGGCCAGGTCATTT 671
|||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 602 GCCAACATCCTCGCCGCCGGTCCCTTTAGCGGTGGTTCGATGAACCCGGCCAGGTCATTT 661
Query 672 GGACCAGCTGTTGTCAGTGGTGACTTCTCTCAGATATGGATCTACTGGGTGGGTCCACTA 731
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 662 GGACCAGCTGTTGTCAGCGGTGACTTCTCTCAGATATGGATCTACTGGGTGGGCCCACTA 721
Query 732 GTCGGTGGTGCACTTGCTGGACTCATCTACGGAGACGTCTTCATCGGATCCTACGCTCCA 791
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 722 GTCGGTGGTGCACTCGCCGGACTCATCTACGGCGACGTCTTCATCGGATCCTACGCTCCG 781
Query 792 GCTCCCACCACAGAAAGCTACCCTTGATCAATCCTATAGC-GTTTTAATTTGCTTGGCTT 850
|||||||||||||||||||||||||||||||||||||| | |||| |||||| |||||||
Sbjct 782 GCTCCCACCACAGAAAGCTACCCTTGATCAATCCTATA-CGGTTTCAATTTGTTTGGCTT 840
Query 851 GCTTTTTGTTGTATGAAAATGTTTGGTCCTCGTTTCTTCCAAAAATGAATGATTGAATGT 910
|||||||||||| |||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 841 GCTTTTTGTTGTGTGAAAATGTTTGGTCCAAGTTTCTTCCGAAAAGGAATGATTGAATGT 900
Query 911 GGAGAAAAAGATCAAAGTTGTACTTTGTGTTGGTT-ATAAATAAGAATTGTATATTTTCA 969
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 901 GGAGAAAAAGATCAAAGTTGTACTTTGTGTTGGTTTAAAAATAAGAATTGTATATTTTCA 960
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36331139901
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5