BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17350.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474 2001 0.0
Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2 261 1e-68
Ahg493141 jgi|Araly1|493141|fgenesh2_kg.7__2574__AT4G17360.1 52.8 9e-06
> Ahg890488 jgi|Araly1|890488|Al_scaffold_0007_2474
Length=1218
Score = 2001 bits (1083), Expect = 0.0
Identities = 1173/1218 (96%), Gaps = 0/1218 (0%)
Strand=Plus/Plus
Query 451 ATGGAAAGTGGCTTTTATTCAGATTGGAAAGATACTTCTTCTTCTTCGTTCTTTGGATCA 510
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAAAGTGGGTTTTATTCAGATTGGAAAGATACTTCTTCTTCTTCGTTGTTTGGATCA 60
Query 511 GAGAATATGGAGGAAGAGTTGGAAGATGGAGTTCTTAGAGCTGAAGAGCTTTTCTCATCG 570
|| |||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 61 GATAATATGGAGGCAGAGTTGGAAGATGGAGTTCTCAGAGCTGAAGAGCTGTTCTCATCG 120
Query 571 ATTCCTCAACCTCAGACACCTAAAGAGCCAATGGAGTTTCTGTCTAGATCCTGGAGTCTC 630
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 ATTCCTCAGCCTCAGACACCAAAAGAGCCAATGGAGTTTCTATCTAGATCCTGGAGTCTC 180
Query 631 TCTACTTCTGAAATCTCCAAAGCACTTGCTCTCAAACATAGACAACAACAAGATCAGTTT 690
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TCTACTTCTGAAATCTCCAAAGCACTTGCTCTCAAACATAGACAACAACAAGAACAGTTT 240
Query 691 TGTGTTGGCCAGAACAGTCCTCCTGTTTTGTTCCCTGATGCTGCTGCAGATCCACTCGTG 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TGTGTTGGCCAGAACAGTCCTCCTGTTTTGTTCCCTGATGCTGCTGCAGATCCACTCGTG 300
Query 751 GCTGGGAAGATCATGAACTCTGTTGGCACACGTAGAGCAGGGACATTGTCTAAATGGTTT 810
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 301 GCTGGGAAGATCATGAACTCTGTTGGCACACGCAGAGCAGGGACATTATCCAAATGGTTT 360
Query 811 CACCACAACAAGGAACACAGCACCAGCAGTACTACTACCAATCTCAAGAAGAAAGATAAA 870
|||||| ||||||||||||||| |||||| ||||| | |||||||||||||||||| ||
Sbjct 361 CACCACCACAAGGAACACAGCAGCAGCAGCACTACCATCAATCTCAAGAAGAAAGACAAG 420
Query 871 GTGCGTGTGGAGAACGCCCACGTGCATTCTGCCGTCTCTATAGCGGCTCTGGCTGCAGGT 930
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTGCGTGTTGAGAACGCCCACGTGCATTCTGCCGTCTCTATAGCGGCTCTGGCTGCAGGC 480
Query 931 TTAGCCTCTGTGACATCTGCTAGCAATTGCAAAGGGTCAGGCTCCAAGATGGCACTGGCT 990
||||||||||| |||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 481 TTAGCCTCTGTAACATCTGCAACCAGTTGCAAAGGGTCAGGCTCCAAGATGGCACTGGCT 540
Query 991 TTAGCCTCAGCCACTGAACTGTTGGCCTCACACTGTGTTGAGATGGCTGAGCGAGCCGGT 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 541 TTAGCCTCAGCCACTGAACTGTTGGCCTCACACTGTGTTGAGATGGCTGAGCGGGCCGGT 600
Query 1051 GCTGACCATGCACGTGTTACTTCCACGGTTAGATCTTCTGTGGATATCCACAGCCCCGGT 1110
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 GCTGACCGTGCACGTGTTACTTCCACGGTTAGATCTTCTGTGGATATCCACAGCCCTGGT 660
Query 1111 GATCTCATGACTCTAACAGCCGCTGCTGCAACTGCTTTGAGAGGAGAAGCGGCTCTGAAG 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATCTCATGACTCTAACAGCCGCTGCTGCAACTGCTTTGAGAGGAGAAGCGGCTCTGAAG 720
Query 1171 GCGAGGCAGCCAAAGGAAGCAAGGAAAAATGCAGCTATTACCCCTTTTGAGAGAAGTTTC 1230
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 721 GCAAGGCAGCCAAAGGAAGCAAGGAAAAATGCAGCTATTACCCCTTTTGAGAGAAGCTTC 780
Query 1231 TCTGATTCTCATTGGCATGCAAATTTTCAGTATAGATTGGAAGAACCAAATCTTCCATTT 1290
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 TCTGATTCTCATTGGCATGCAAATTTTCAGTTTAGATTGGAAGAACCAAATCTTCCATTT 840
Query 1291 GAAGGCGAACTGATGCAATGTGCACGAAATGGAGTGCAGCGAACTAAGCGTGTCTGTGTC 1350
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 841 GAAGGTGAACTGATGCAATGTGCGCGAAATGGAGTGCAGCGAACTAAGCGTGTCTGCGTC 900
Query 1351 TATATCAACAAGAAGTCTCAGGTAATGATCAAACTCAAAAGCAAACATGTTGGAGGGGCA 1410
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 901 TATATCAACAAGAAGTCTCAGGTAATGATCAAACTCAAAAGTAAACATGTTGGAGGGGCA 960
Query 1411 TTCTCTAAGAAAATCAAATGCGTTGTCTATGGAGTCTGCGATGAGAAATCAGCTTGGCCT 1470
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 961 TTCTCCAAGAAGATCAAATGTGTTGTCTATGGAGTCTGCGATGAGAAATCAGCTTGGCCT 1020
Query 1471 TACAGGAAAGAGAGGGAAAATTCAGAAGAAGTCTACTTCGGTCTGAAAACCGGACAAGGT 1530
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 TACAGGAAAGAGAGAGAAAATTCAGAAGAAGTCTACTTTGGTCTGAAAACCGGACAAGGT 1080
Query 1531 CTTTTGGAGTTCAAGTGCAAGAGCAAGATTCACAAGCAGAGATGGGTTGATGGGGTTCAG 1590
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTTTGGAGTTCAAGTGCAAGAACAAGATTCACAAGCAGAGATGGGTTGATGGGGTTCAG 1140
Query 1591 TCTCTTCTCCGCCAAGTAAATTGCTTTGAGGCTGCCAAATGCTCGCTGGGATCTCTGAAT 1650
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1141 TCTCTTCTCCGCCAAGTAAATTGCTTTGAGGCTGCCAAATGCTCGCTGGGATCTCTGAGT 1200
Query 1651 CTCACTGGTCACACGTGA 1668
||||| |||||||| |||
Sbjct 1201 CTCACCGGTCACACATGA 1218
> Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2
Length=1496
Score = 261 bits (141), Expect = 1e-68
Identities = 193/219 (88%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 1430 GCGTTGTCTATGGAGTCTGCGATGAGAAATCAGCTTGGCCTTACAGGAAAGAGAGGGAAA 1489
||||||| |||| ||||||||| |||| || || |||||||||||||||||||||||||
Sbjct 1331 GCGTTGTTTATGCAGTCTGCGACGAGATATGTGCATGGCCTTACAGGAAAGAGAGGGAAA 1272
Query 1490 ATTCAGAAGAAGTCTACTTCGGTCTGAAAACCGGACAAGGTCTTTTGGAGTTCAAGTGCA 1549
|||| ||||||||||| || ||||||||||| ||||| || ||||| |||||||||||||
Sbjct 1271 ATTCCGAAGAAGTCTATTTTGGTCTGAAAACAGGACACGGCCTTTTAGAGTTCAAGTGCA 1212
Query 1550 AGAGCAAGATTCACAAGCAGAGATGGGTTGATGGGGTTCAGTCTCTTCTCCGCCAAGTAA 1609
|||| |||||||| |||||||||||||||| |||| |||||||| ||||||| |||||
Sbjct 1211 AGAGTAAGATTCAGAAGCAGAGATGGGTTGCTGGGATTCAGTCTAATCTCCGCTTAGTAA 1152
Query 1610 ATTGCTTTGAGGCTGCCAAATGCTCGCTGGGATCTCTGA 1648
|||| ||||||||||||||||||| |||| ||||||||
Sbjct 1151 GTTGCCTTGAGGCTGCCAAATGCTCTCTGGAATCTCTGA 1113
> Ahg493141 jgi|Araly1|493141|fgenesh2_kg.7__2574__AT4G17360.1
Length=1138
Score = 52.8 bits (28), Expect = 9e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Minus
Query 1857 GAATCTCAATTGAACTTTTTATTTCCAA 1884
||||||||||||||||||||||||||||
Sbjct 1138 GAATCTCAATTGAACTTTTTATTTCCAA 1111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5