BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17360.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493141 jgi|Araly1|493141|fgenesh2_kg.7__2574__AT4G17360.1 1864 0.0
Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2 974 0.0
> Ahg493141 jgi|Araly1|493141|fgenesh2_kg.7__2574__AT4G17360.1
Length=1138
Score = 1864 bits (1009), Expect = 0.0
Identities = 1095/1138 (96%), Gaps = 0/1138 (0%)
Strand=Plus/Plus
Query 1 ATGATACGAAGAGTCTCCACCACCTCATGTCTCTCCGCCACAGCTTTTAGATCATTTACC 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGATACGAAAAGTCTCCACCACCTCATGTCTCTCCGCCACAGCTTTTAGATCATTTACA 60
Query 61 AAATGGTCCTTTAAATCTTCTCAATTTCACGGCGAGTCCCTCGATTCCTCTGTCTCACCT 120
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATGGTCCTTTAATTCCTCTCAATTTCACGGCGAGTCCCTCGATTCCTCTGTCTCACCT 120
Query 121 CTTCTCATTCCCGGCTTCCACGTCTTCCATTGTCCGGATGTCGTTGGGATTGTAGCGAAA 180
|||||||| |||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 CTTCTCATCCCCGGCGTCCACGTCTTCCATTGTCCGGATGTGGTTGGGATTGTAGCCAAA 180
Query 181 CTTTCAGATTGTATTGCTGCTAAAGGAGGTAACATTCTTGGTTATGATGTTTTTGTTCCT 240
|| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 CTATCAGATTGTATTGCTGCTAAAGGAGGAAACATTCTTGGTTACGATGTTTTTGTTCCT 240
Query 241 GAGAACAAGAACGTCTTCTACTCTAGAAGTGAGTTTATATTTGATCCAGTAAAATGGCCG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAGAACAAGAACGTCTTCTACTCTAGAAGTGAGTTTATATTTGATCCAGTAAAATGGCCA 300
Query 301 AGGAGGCAGATGGATGAAGATTTTCAAACTATTGCACAAAAGTTTAGTGCTTTGAGCTCA 360
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGGAGCCAGATGGATAAAGATTTTCAAACTATTGCACAAAAGTTTAGTGCTTTGAGCTCA 360
Query 361 GTAGTACGAGTGCCCTCTTTAGACCCCAAATACAAGATAGCTCTTCTACTGTCGAAACAG 420
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 GTAGTACGAGTACCCTCTTTAGACCCCAAATACAAGATAGCTCTTTTACTGTCGAAACAG 420
Query 421 GATCATTGTCTGGTTGAAATGTTACATAAATGGCAGGATGGAAAACTTCCCGTTGATATA 480
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 421 GATCATTGTCTGGTTGAAATGTTACATAAATGGCAGGACGGAAAACTTCCCGTCGATATA 480
Query 481 ACATGTGTGATAAGTAATCATGAAAGAGCTCCAAACACCCATGTTATGAGGTTTCTCCAG 540
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 481 ACATGTGTGATAAGTAATCATGAAAGAGCTCCAAACACTCATATTATGCGGTTTCTCCAG 540
Query 541 AGGCATGGCATCTCTTATCATTATTTACCAACAACCGATCAGAATAAAATAGAAGAGGAG 600
|||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 541 AGGCATGGCATCTCATATCATTATTTGCCAACTACCGATCAGAAGAAAATAGAAGAGGAG 600
Query 601 ATTTTGGAATTGGTTAAGGGTACCGATTTTCTAGTTCTCGCTAGATACATGCAGCTACTA 660
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTTTGGAATTGGTTAAGGATACCGATTTTCTAGTTCTCGCTAGATACATGCAGCTACTA 660
Query 661 TCCGGTAACTTCTTGAAAGGTTATGGAAAAGATGTAATCAACATCCATCATGGCCTCTTG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCCGGTAACTTCTTGAAAGGTTATGGAAAAGATGTAATCAACATCCATCATGGCCTCTTG 720
Query 721 CCATCATTCAAAGGAAGAAATCCCGTGAAACAGGCATTTGATGCAGGTGTGAAACTAATT 780
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CCATCATTCAAGGGACGAAATCCCGTGAAACAGGCATTTGATGCAGGTGTGAAACTAATT 780
Query 781 GGTGCAACAACTCACTTTGTTACAGAGGAGCTTGATTCAGGTCCTATCATTGAGCAAATG 840
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 781 GGTGCAACAACTCACTTTGTTACAGAGGAACTTGATTCAGGTCCTATCATTGAACAAATG 840
Query 841 GTTGAGAGAGTTTCCCACCGAGACAATTTGAGGAGCTTTGTCCAGAAATCAGAGGACCTT 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 841 GTTGAGAGAGTTTCCCACCGAGACAATTTGAGAAGCTTTGTCCAGAAATCAGAGGACCTT 900
Query 901 GAGAAAAAGTGTCTCATGAAAGCTATAAAATCTTACTGCGAACTGCGAGTATTGCCTTAT 960
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 901 GAGAAAAAGTGTCTCATGAAAGCTATCAAATCTTACTGCGAACTGCGAGTATTGCCTTAC 960
Query 961 GGGACACAAAGGACTGTCGTATTCTAATACGGTCTATATGAATATCTCTGACATGTCTCT 1020
|||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 961 GGGACACAAAAGACTGTCGTATTCTAATACGGTCTACATGAAAATCTCTGACATGTCTCT 1020
Query 1021 CACGTGATTCTTCATATGAACTTCTCACTCAAACAAAAATATACATACCACTTCTCTACA 1080
||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1021 CACCTGATTCTTCAAATGAACTTCTCACTCATGCAAAAATATACATACCACTTCTCTACA 1080
Query 1081 ATTTTTTGACTCTTCATAGAAACTGAATCATTGGAAATAAAAAGTTCAATTGAGATTC 1138
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1081 GTTGTTTGACTCTTCATAGAAACTGGATCATTGGAAATAAAAAGTTCAATTGAGATTC 1138
> Ahg494236 jgi|Araly1|494236|fgenesh2_kg.8__52__AT5G47435.2
Length=1496
Score = 974 bits (527), Expect = 0.0
Identities = 788/915 (86%), Gaps = 14/915 (2%)
Strand=Plus/Plus
Query 79 TCTCAATTTCACGGCGAGTCCCTCGATTCCTCTGTCTCACCTCTTCTCATTCCCGGCTTC 138
|||| ||||||||||||||||||||||||||| ||||| ||| ||||||| |||||| ||
Sbjct 116 TCTCGATTTCACGGCGAGTCCCTCGATTCCTCCGTCTCCCCTGTTCTCATCCCCGGCGTC 175
Query 139 CACGTCTTCCATTGTCCGGATGTC-GTTGGGATTGTAGCGAAACTTTCAGATTGTATTGC 197
|| ||||||||||||| ||||| | ||||| |||||||| ||||| ||||||||||||||
Sbjct 176 CATGTCTTCCATTGTCAGGATG-CTGTTGGAATTGTAGCAAAACTATCAGATTGTATTGC 234
Query 198 TGCTAAAGGAGGTAACATTCTTGGTTATGATGTTTTTGTTCCTGAGAACAAGAACGTCTT 257
||| ||||| || ||||||||||| || ||||||||||||||||| ||||| ||||||||
Sbjct 235 TGCAAAAGGTGGCAACATTCTTGGCTACGATGTTTTTGTTCCTGAAAACAACAACGTCTT 294
Query 258 CTACTCTAGAAGTGAGTTTATATTTGATCCAGTAAAATGGCCGAGGAGGC-AGATGGATG 316
||||||| | |||||||||||||||||||| || ||||||||||| | | || ||||||
Sbjct 295 CTACTCTCGCAGTGAGTTTATATTTGATCCGGTTAAATGGCCGAGAAACCAAG-TGGATG 353
Query 317 AAGATTTTCAAACTATTGCACAAAAGTTTA-G-TGCTTTGAGCTCAGTAGTACGAGTGCC 374
|||||||||||||||||||||||| | | | | ||| |||| || || || || |||||
Sbjct 354 AAGATTTTCAAACTATTGCACAAA-GAT-ACGGTGCCTTGAATTCGGTTGTGCGTGTGCC 411
Query 375 CTCTTTAGACCCCAAATACAAGATAGCTCTTCTACTGTCGAAACAGGATCATTGTCTGGT 434
||| |||||||||| || ||||||||||||||||| || ||||||||||||||||| ||
Sbjct 412 TTCTATAGACCCCAAGTATAAGATAGCTCTTCTACTTTCAAAACAGGATCATTGTCTTGT 471
Query 435 TGAAATGTTACATAAATGGCAGGATGGAAAACTTCCC-GTTGATATAACATGTGTGATAA 493
|||||||| |||||||||||||| || ||||| ||| || ||||| || ||||||||||
Sbjct 472 CGAAATGTTGCATAAATGGCAGGACGGGAAACT-CCCAGTCGATATCACCTGTGTGATAA 530
Query 494 GTAATCATGAAAGAGC-TCCAAACACCCATGTTATGAGGTTTCTCCAGAGGCATGGCATC 552
| |||||||||||||| || || ||| || |||||| ||||||| ||||||||||||||
Sbjct 531 GCAATCATGAAAGAGCATCTAA-CACTCACGTTATGCGGTTTCTTGAGAGGCATGGCATC 589
Query 553 TCTTATCATTATTTACCAACAACCGATCAGAATAAAATAGAAGAGGAGATTTTGGAATTG 612
| ||||||||| || | ||||| | ||||||||| |||||| || ||||||||||||
Sbjct 590 CCGTATCATTATGTATCGACAACTAAAGAGAATAAAAGAGAAGATGACATTTTGGAATTG 649
Query 613 GTTAAGGGTACCGATTTTCTAGTTCTCGCTAGATACATGCAGCTACTATCCGGTAACTTC 672
||||| | || ||||| |||||||| ||||||||||||||| | |||| ||||||||
Sbjct 650 GTTAAAGACACTGATTTCCTAGTTCTTGCTAGATACATGCAGATTTTATCGGGTAACTTT 709
Query 673 TTGAAAGGTTATGGAAAAGATGTAATCAACATCCATCATGGCCTCTTGCCATCATTCAAA 732
||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| ||
Sbjct 710 TTGAAAGGTTATGGAAAGGATGTAATCAACATCCACCATGGTCTCTTACCATCATTTAAG 769
Query 733 GGAAGAAATCCCGTGAAACAGGCATTTGATGCAGGTGTGAAACTAATTGGTGCAACAACT 792
|| || |||||| ||||||||||||||||| ||||||||||||||||| ||||| | |
Sbjct 770 GGTGGATATCCCGCAAAACAGGCATTTGATGCTGGTGTGAAACTAATTGGAGCAACTAGT 829
Query 793 CACTTTGTTACAGAGGAGCTTGATTCAGGTCCTATCATTGAGCAAATGGTTGAGAGAGTT 852
||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||||||| |||
Sbjct 830 CACTTTGTTACCGAGGAACTTGATTCAGGGCCTATTATTGAACAAATGGTTGAGAGTGTT 889
Query 853 TCCCACCGAGACAATTTGAGGAGCTTTGTCCAGAAATCAGAGGACCTTGAGAAAAAGTGT 912
|| ||||||||||| | |||||||||||||||||||| |||||||| |||||||| ||
Sbjct 890 TCTCACCGAGACAACCTAAGGAGCTTTGTCCAGAAATCCGAGGACCTAGAGAAAAAATGC 949
Query 913 CTCATGAAAGCTATAAAATCTTACTGCGAACTGCGAGTATTGCCTTATGGGACACA-AAG 971
|||| ||||||||||||||||||||||||||| || ||||| |||||||| ||| | |||
Sbjct 950 CTCACGAAAGCTATAAAATCTTACTGCGAACTACGGGTATTACCTTATGGCACAAACAAG 1009
Query 972 GACTGTCGTATTCTA 986
||||| ||||||||
Sbjct 1010 -ACTGTTGTATTCTA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5