BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17370.1
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493140 jgi|Araly1|493140|fgenesh2_kg.7__2573__AT4G17370.1 2037 0.0
> Ahg493140 jgi|Araly1|493140|fgenesh2_kg.7__2573__AT4G17370.1
Length=1326
Score = 2037 bits (1103), Expect = 0.0
Identities = 1257/1327 (95%), Gaps = 27/1327 (2%)
Strand=Plus/Plus
Query 50 CGTACAATATTTGAGATAGGCCCCATCGACGTCGTTTAGCTCAAAGCAAGAAGGG----A 105
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| |
Sbjct 1 CGTACAATATTTGAGATAGGCCCCATCGTCGTCGTTTAGCCCAAAGCAATAAGGGATAAA 60
Query 106 GAGAG--AGAGTC------AGC-GAG-C-TTCGTTAATGGCGGATGTTAAGGACTCAGTG 154
||||| ||| || ||| || | ||| ||||||||||||| || |||||||| |
Sbjct 61 GAGAGTCAGAATCAGAGAGAGCTCAGACGTTCTTTAATGGCGGATGCTATGGACTCAGCG 120
Query 155 ATTACCAAGTACGGAATCGTAGGGATTGGTATGATGGGAAGAGAACATCTCATCAATCTT 214
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTACCAAGTACGGAATCGTAGGGATTGGTATGATGGGAAGAGAACATCTCATCAATCTT 180
Query 215 CACCATCTCCGTGACCAAGGCCTCGCCGTCGTTTGCATCGCCGATCCTCACCCTCCTTCA 274
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 181 CACCATCTCCGAGACCAAGGCCTCGCTGTCGTTTGCATCGCCGATCCTCACCCTCCCTCA 240
Query 275 CAGCTCCTGGCCATTGAACTCGCTCAATCTTTTGGATGGGAGCTTAAGGTTTTCTCAGGA 334
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CAGCTTCTGGCCATTGAACTCGCTCAATCTTTTGGATGGGAGCTTAAGGTTTTCTCAGGA 300
Query 335 CACGAGGAGTTGCTCAAGAGTGAGCTGTGTGACGTTATTGTTGTCTCTTCTCCAAATATG 394
||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 301 CACGAAGAGTTGCTCAAGAGTGAGCTGTGTGACGTGATTGTTGTGTCTTCTCCAAATATG 360
Query 395 ACTCATCATCAGATTCTTATGGACATTATCAATTATTCAAAACCGCATCATGTTCTTGTT 454
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 ACTCATCATCAGATTCTTATGGACATTATCAATTATCCAAAACCGCATCATGTTCTTGTT 420
Query 455 GAGAAGCCTTTATGCACCACAGTTGCAGATTGCAAACAGGTTTTGGAGGCTGCAAAGAAA 514
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GAGAAGCCTTTATGCACCACCGTTGCAGATTGCAAACAGGTTTTGGAGGCTGCAAATAAA 480
Query 515 AGGTCAGATATGGTGGTGCAAGTTGGGTTGGAGTACAGATACATGCCGCCAGTTGCTAAG 574
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 481 AGGTCAGATATGGTGGTGCAAGTTGGGTTGGAGTACAGATACATGCCGCCGGTAGCTAAG 540
Query 575 CTAATAGAACAAGTAAAAGGCAGAGACTTTGGTAATGTCAAGATGGTAGCAATCCGAGAA 634
|||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 TTAATAGAAAAAGTAAAAGGCAGAGATTTTGGTAATGTCAAGATGGTAGCAATCCGAGAA 600
Query 635 CATAGATTCCCTTTCTTGGTTAAGGTGAACAACTGGAATAGATTCAATGTGAACACTGGA 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CATAGATTCCCTTTCTTGGTTAAGGTGAACAACTGGAATAGATTCAATGTGAACACTGGA 660
Query 695 GGGACCT-TAGTGGAGAAATGCTGCCACTTCTTTGATCTAATGAGGCTCTTTGCCGGTGC 753
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GGGA-CTCTAGTGGAGAAATGCTGCCACTTCTTTGATCTAATGAGGCTCTTTGCCGGTGC 719
Query 754 AAATCCTGTCTGTGTGATGGCTTCTGGAGGCATGGATGTGAACCACAAGGATGAAGTTTA 813
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 720 AAATCCTGTTTGTGTGATGGCTTCTGGAGGCATGGATGTGAACCACAAGGATGAAATTTA 779
Query 814 TGGTGGAAAGGTGCCTGATATAATTGATAACGCATATGTTATTATTGAGTTTGACAATGG 873
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 780 TGATGGAAAGGTGCCTGATATAATTGATAACGCATATGTTATAATTGAGTTTGACAATGG 839
Query 874 ATGTCGTGGGATGCTCGATCTTTGCATGTTTGCTGAAGGAAGCAAAAACGAGCAAGAAAT 933
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 ATGTCGTGGGATGCTCGACCTTTGCATGTTTGCTGAGGGAAGCAAAAACGAGCAAGAAAT 899
Query 934 TTCTGTTACTGGTGACATTGGAAAGGGGGAGGCACTTGTTCCAGAGGGTATAGTTCGATC 993
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTCTGTTACTGGTGACATTGGAAAGGGGGAGGCACTTGTTCCAGAGGGTATAGTTCGATC 959
Query 994 TGGCAGTCGTATTGGAGGAAGAGAACACGTTCAAACAATAAAAGCAGAAGATGAAAGAAT 1053
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 960 TGGCAGTCGTGTTGGAGGAAGAGAACACGTTCAAACAATAAAAGCTGAAGATGAAAGAAT 1019
Query 1054 AAAATATGAAGGGTTGCATCACGGGTCAAGTTACTTGGAACACCTCACCTTCTTATCAGC 1113
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AAAATATGAAGGGTTACATCACGGGTCAAGTTACTTGGAACACCTCACCTTCTTATCAGC 1079
Query 1114 AATCAGAGGTGAAGGAATAGCAGCTGTTGATTTGGAAGACGGATTGATGGCTGTTGCCAT 1173
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1080 AATCAGAGGTGAAGGAAGAGCAGCTATTGATTTGGAAGACGGATTGATGGCTGTTGCCAT 1139
Query 1174 GGGAGTTGCTGCACAGCTCTCCATTCAGGAGCGCCGCTATGTAACCATTGACGAGGTCTT 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GGGAGTTGCTGCACAGCTCTCCATTCAGGAGCGCCGCTATGTAACCATTGACGAGGTCTT 1199
Query 1234 GTGATTTGTGACTGTCAGATAGGTAAATAAACTAAAATAGAACCTTTGT-A-T-T---AT 1287
|||||||||||||| |||||||||||| ||||||||||| | ||||||| | | | ||
Sbjct 1200 GTGATTTGTGACTGGCAGATAGGTAAAGAAACTAAAATACAGCCTTTGTTAATCTGGTAT 1259
Query 1288 TAC--C-GTTCAAATGTTTGCCATACAACACTGTTTATTGTAAGAAG-AGAGTGATCATC 1343
|| | |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1260 TATTTCTGTTCTTATGTTTGCCATACAACACTGTTTATTGTAAGAAGGAGAGTGATCATC 1319
Query 1344 AACTGTT 1350
|||||||
Sbjct 1320 AACTGTT 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50741602527
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5