BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17390.1
Length=997
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946494 jgi|Araly1|946494|scaffold_702723.1 1242 0.0
Ahg493205 jgi|Araly1|493205|fgenesh2_kg.7__2638__AT4G16720.1 641 0.0
Ahg934194 jgi|Araly1|934194|scaffold_402182.1 492 2e-138
> Ahg946494 jgi|Araly1|946494|scaffold_702723.1
Length=753
Score = 1242 bits (672), Expect = 0.0
Identities = 727/754 (96%), Gaps = 2/754 (0%)
Strand=Plus/Plus
Query 47 CTGCGACGCCGGAAAATCGCAATGGGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAG 106
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 CTGCGACGCCGGAAAAACGCAATGGGTGCGTACAAGTACGTGTCGGAGCTATGGAGGAAG 60
Query 107 AAGCAGTCGGATGTGATGAGGTTTCTTCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAG 166
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 AAGCAATCGGATGTGATGAGGTTTCTGCAGAGGGTTAGGTGTTGGGAGTATCGCCAGCAG 120
Query 167 CCTTCCATTGTTCGTCTTGTTCGTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTAC 226
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CCTTCCATTGTTCGTCTTGTTCGTCCCACTCGTCCCGACAAAGCTCGTCGTCTCGGCTAC 180
Query 227 AAGGCCAAGCAGGGGTTTGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGG 286
|||||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 AAGGCCAAGCAGGGATTTGTTGTCTACCGTGTTCGTGTCAGACGTGGTGGTCGCAAGAGG 240
Query 287 CCAGTGCCTAAGGGTATCGTGTACGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAA 346
|| || || |||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 CCTGTTCCCAAGGGTATTGTGTATGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAA 300
Query 347 TTCCAGCGTAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTT 406
|||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 301 TTCCAGCGCAGTAAGAGATCTGTTGCTGAGGAACGTGCTGGTCGCAAATTGGGTGGCCTT 360
Query 407 AGGGTTGTTAACTCCTACTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATC 466
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGGTCGTTAACTCTTACTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATC 420
Query 467 CTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAAC 526
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 421 CTAGTAGACCCTGCACACAATGCTGTCCGAAATGATCCAAGGATCAACTGGATCTGCAAC 480
Query 527 CCTGTGCACAAGCACAGAGAACTCAGAGGTCTCACCTCCGAAGGAAAGAAGAATCGTGGT 586
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 CCGGTGCACAAGCACAGAGAACTCAGAGGGCTCACCTCCGAAGGAAAGAAGAATCGTGGT 540
Query 587 CTTCGTGGAAAGGGTCACAACAACCACAAGAACAGACCTTCCCGCAGGGCAACCTGGAAG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTTCGTGGAAAGGGTCACAACAACCACAAGAACAGACCTTCCCGCAGGGCAACCTGGAAG 600
Query 647 AAGAACAACAGTATCTCTCTCCGTCGTTACCGGTGATCAGTTTTATGTTTTGTTTTTTCT 706
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 AAGAACAACAGTCTCTCTCTCCGTCGTTACCGGTGATCAGTTTTATGTTTTGTTTTT-CT 659
Query 707 CGAACTGGTATATCTTCAGTGTGGATT-GTGTTTCGGAATTCTGGAATTACATTGGGATG 765
|||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 660 CGAAGTGGTATATCTTCTGTGTGGATTTGTGTTTCGGAATTCTGGAATTACATTGGGATG 719
Query 766 GAAGACTTTCACATTCAAGAGTTTGTTTCAAGTT 799
||||||||||||||||||||||||||||||||||
Sbjct 720 GAAGACTTTCACATTCAAGAGTTTGTTTCAAGTT 753
> Ahg493205 jgi|Araly1|493205|fgenesh2_kg.7__2638__AT4G16720.1
Length=841
Score = 641 bits (347), Expect = 0.0
Identities = 534/624 (86%), Gaps = 14/624 (2%)
Strand=Plus/Plus
Query 67 AATGGGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAG 126
||||||||||||||| || || |||||||||||||||||||| ||||| |||||||||||
Sbjct 64 AATGGGTGCGTACAAGTATGTATCGGAGCTATGGAGGAAGAAACAGTCCGATGTGATGAG 123
Query 127 GTTTCTTCAGAGGGTTAGGTGTTGGGAGTATC-GCCAGCAGCCTTCCATTGTTCGTCTTG 185
|| || |||||||| |||||||||||||| | | ||||| ||||| |||||||||||||
Sbjct 124 ATTCCTCCAGAGGGTGAGGTGTTGGGAGTA-CAGACAGCAACCTTCGATTGTTCGTCTTG 182
Query 186 TTC-GTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGGGGTTT 244
|| | || |||||||| || |||||||||||| | || ||||||||||||||||| |||
Sbjct 183 -TCAGGCCTACTCGTCCTGATAAGGCTCGTCGTTTGGGTTACAAGGCCAAGCAGGGCTTT 241
Query 245 GTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTATC 304
||||| |||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 242 GTTGTGTACCGTGTCCGTGTGAGACGTGGTGGTCGCAAGAGGCCAGTGCCTAAGGGTATC 301
Query 305 GTGTACGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAATTCCAGCGTAGTAAGAGA 364
||||| ||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||| |
Sbjct 302 GTGTATGGTAAGCCCACAAACCAGGGAGTGACACAACTCAAGTTCCAGCGTAGCAAGCGG 361
Query 365 TCTGTTGCTGAGGAACGTGCTGGTC-GCAAACTGGGAGGCCTTAGGGTTGTTAACTCCTA 423
|||||||||||||| |||||||| | | ||| |||| || || || ||||| ||||| ||
Sbjct 362 TCTGTTGCTGAGGAGCGTGCTGG-CAGGAAATTGGGTGGTCTCAGAGTTGTCAACTCTTA 420
Query 424 CTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATCCTT-GTAGACCCTGCAC 482
||||||||||||||| || || |||||||| |||||||| || ||| || ||||| ||||
Sbjct 421 CTGGCTCAATGAGGATTCGACGTACAAGTATTACGAGATCAT-CTTGGTTGACCCAGCAC 479
Query 483 ACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACAAGCACA 542
||||||| || || ||||| || || |||||||||||||||||||| || |||||||||
Sbjct 480 ACAATGCTGTGCGTAATGACCCGAGAATCAACTGGATCTGCAACCCAGTTCACAAGCACC 539
Query 543 GAGAACTCAGAGGTCTCACCTCCGAAGGAAAGAAGAATC-GTGGTCTTCGTGGAAAGGGT 601
| || |||||||| || ||||| || ||||||||||| | | ||||||||||||||||||
Sbjct 540 GTGAGCTCAGAGGACTTACCTCAGAGGGAAAGAAGAA-CAGAGGTCTTCGTGGAAAGGGT 598
Query 602 CACAACAACCACAAGAACAGACCTTCCCGCAGGGCAACCTGGAAGAAGAACAACAGTATC 661
|||||||||||||||||| | || || |||||||| || ||||||||||||||| | |
Sbjct 599 CACAACAACCACAAGAACCGTCCATCTCGCAGGGCTACATGGAAGAAGAACAAC--TCCC 656
Query 662 TC-TC-TCCGTCGTTACCGGTGAT 683
|| || | || |||||||| ||||
Sbjct 657 TCGTCCTTCGCCGTTACCGTTGAT 680
> Ahg934194 jgi|Araly1|934194|scaffold_402182.1
Length=655
Score = 492 bits (266), Expect = 2e-138
Identities = 507/624 (81%), Gaps = 14/624 (2%)
Strand=Plus/Plus
Query 67 AATGGGTGCGTACAAATACGTGTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAG 126
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 20 AATGGGTGCGTACAAGTATGTCTCGGAGCTATGGAGGAAGAAGCAGTCGGATGTGATGAG 79
Query 127 GTTTCTTCAGAGG-GTTAGGTGTTGGGAGTATC-GCCAGCAGCCTTCCATTGTTCGTCTT 184
| || || | | || ||||||||||| || | | || || ||||| || |||||| ||
Sbjct 80 GCACCTGCA-ACGCGTGAGGTGTTGGGATTA-CAGACAACAACCTTCGATCGTTCGT-TT 136
Query 185 GT-TCGTCCCACTCGTCCCGACAAGGCTCGTCGTCTCGGCTACAAGGCCAAGCAGGGGTT 243
| ||| ||||||||||| ||||| ||||| ||| | || | |||||| |||||||| |
Sbjct 137 GACTCGACCCACTCGTCCAGACAAAGCTCGCCGTTTGGGGTTCAAGGCGAAGCAGGGATA 196
Query 244 TGTTGTCTACCGTGTTCGAGTCAGACGTGGTGGACGCAAGAGGCCAGTGCCTAAGGGTAT 303
||| || ||| | || ||||| ||||| |||||| | ||||||||||| |||||||||||
Sbjct 197 TGTGGTGTACAGAGTGCGAGTGAGACGAGGTGGAAGGAAGAGGCCAGTTCCTAAGGGTAT 256
Query 304 CGTGTACGGTAAACCCACCAACCAGGGAGTGACACAGCTCAAATTCCAGCGTAGTAAGAG 363
||||| ||||| || || ||||| ||||||||||| ||||| ||||| || || |||||
Sbjct 257 TGTGTATGGTAAGCCAACGAACCAAGGAGTGACACAACTCAAGTTCCAACGAAGCAAGAG 316
Query 364 ATCTGTTGCTGAGGAACGTGCTGGTCGCAAACTGGGAGGCCTT-AGGGTTGTTAACTCCT 422
|||||||| ||||| || ||||| | || || | || || || ||||| |||||||
Sbjct 317 GTCTGTTGCGGAGGAGCGAGCTGGGAGGAAGCTTAGTGGT-TTGAGAGTTGTCAACTCCT 375
Query 423 ACTGGCTCAATGAGGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCAC 482
||||| |||| ||||| || || ||||||||||||||||| || ||||| || || || |
Sbjct 376 ACTGGATCAACGAGGATTCGACTTACAAGTACTACGAGATCATTCTTGTGGATCCGGCTC 435
Query 483 ACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACAAGCACA 542
| || || || || ||||| || || ||||||||||| || |||||||| |||||||||
Sbjct 436 ATAACGCAGTGCGTAATGACCCGAGAATCAACTGGATTTGTAACCCTGTTCACAAGCACC 495
Query 543 GAGAACTCAGAGGTCTCACCTCCGAAGGAAAGAAGAATC-GTGGTCTT-CGTGGAAAGGG 600
| || |||||||||||||| || |||||||||||||| | | ||| || |||||||||||
Sbjct 496 GTGAGCTCAGAGGTCTCACATCAGAAGGAAAGAAGAA-CAGAGGT-TTGCGTGGAAAGGG 553
Query 601 TCACAACAACCACAAGAA-CAGACCTTCCCGCAGGGCAACCTGGAAGAAGAACAACAGTA 659
||| |||||||||||||| | |||| || || || || || |||||||| ||||||| |
Sbjct 554 TCATAACAACCACAAGAATC-GACCATCACGTAGAGCTACTTGGAAGAAAAACAACACTC 612
Query 660 TCTCTCTCCGTCGTTACCGGTGAT 683
|||| |||| ||||||||| ||||
Sbjct 613 TCTCCCTCCTTCGTTACCGTTGAT 636
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37055475324
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5