BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17410.3
Length=3141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946493 jgi|Araly1|946493|scaffold_702722.1 3670 0.0
Ahg494238 jgi|Araly1|494238|fgenesh2_kg.8__54__AT5G47430.1 1347 0.0
> Ahg946493 jgi|Araly1|946493|scaffold_702722.1
Length=2563
Score = 3670 bits (1987), Expect = 0.0
Identities = 2390/2574 (93%), Gaps = 70/2574 (3%)
Strand=Plus/Plus
Query 580 TCATTATCAGATTAATTCCAATGGCAATATATTACAAGTTTAAGAGTGCGAGGGATTATG 639
||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 TCATTATCAGATTAAATCGAATGGCAATTTATTACAAGTTTAAGAGTGCGAGGGATTATG 60
Query 640 ATACCATCTCCATGGATGGTCCTTTTATAACAGTTGGTTTACTCAAAGAAAAAATTTACG 699
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 ATACCATCTCCATGGATGGTCCTTTTATAACAGTTGGTTTTCTCAAAGAAAAAATTTACG 120
Query 700 AAACTAAGCATTTGGGAAGTGGTAAAGACCTTGACATTGTCATCTCTAATGCCCAAACTA 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACTAAGCATTTGGGAAGTGGTAAAGACCTTGACATTGTCATCTCTAATGCCCAAACTA 180
Query 760 ATGAAGAATATCTGGATGAAGCAATGTTAATACCAAAAAATACTTCTGTGCTAATTCGCC 819
||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||
Sbjct 181 ATGAAGAATATCTGGATGAAGCAATGTTAATTCCCAAAAATACTTCTGTTCTAATTCGCC 240
Query 820 GGGTCCCTGGACGCCCTCGCATCAGAATTATTACCAGAGAAGAGCCGAGAGTCGAGGATA 879
|||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||
Sbjct 241 GGGTCCCTGGACGCCCTCGCATCAGAATTATTACCATACCAGAGCCGAGAGTTGAGGATA 300
Query 880 AAGTGGAAAACGTTCAAGCTGATATGAACAATGTTATTACTGCTGATGCATCTCCCGTTG 939
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 301 AAGTGGAAAACGTTCAAGCTGACCTGAACAATGTTATTACTGCTGATGCATCTGCTGTTG 360
Query 940 AAGATGAATTCGATGAGTTTGGGAATGATTTGTATTCAATTCCTGATGCCCCAGCAGTCC 999
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGACGAATGGGATGAGTTTGGGAATGATTTGTATTCAATTCCTGATGCCCCAGCAGTCC 420
Query 1000 ATTCTAATAACCTATGTCATGATTCTGCACC-A--GCTG----A-T-GATGAAGAAACCA 1050
||||||||||||||||||||||| ||||||| | | || | | |||||||||||||
Sbjct 421 ATTCTAATAACCTATGTCATGATCCTGCACCAACCGATGATAAAGTAGATGAAGAAACCA 480
Query 1051 AGCTAAAGGCATTAATTGACACTCCAGCACTAGACTGGCATCAACAAGGTGCAGATAGTT 1110
| ||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |||
Sbjct 481 AAATAAAGGCATTAATTGACACCCCAGCACTAGACTGGCAGCAACAAGGTGCGGATGGTT 540
Query 1111 TTGGCCCGGGTAGAGGTTATGGGAGGGGTATGGCTGGAAGGATGGGTGGCCGCGGTTTTG 1170
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTGGCCCGGGCAGAGGTTATGGGAGGGGTATGGCTGGAAGGATGGGTGGCCGCGGTTTTG 600
Query 1171 GAATGGAGAGGACAACACCGCCACCAGGCTATGTTTGCCATCGGTGCAATGTTTCTGGAC 1230
||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GAATGGAAAGGAAAACGCCGCCACCAGGCTATGTTTGCCATCGGTGCAATGTTTCTGGAC 660
Query 1231 ATTTTATTCAACACTGCTCCACAAACGGTAATCCTAACTTTGATGTTAAGAGAGTTAAAC 1290
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 661 ATTTTATTCAACACTGCTCCACAAACGGTAATCCTAATTTTGATGTTAAAAGAGTTAAAC 720
Query 1291 CACCTACTGGTATCCCCAAGTCGATGCTGATGGCAACCCCAAATGGCTCTTACTCCTTGC 1350
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 721 CACCTACTGGTATCCCCAAGTCAATGCTGATGGCGACCCCAAATGGCTCTTACTCCTTGC 780
Query 1351 CAAGTGGCGCAGTAGCAGTTTTAAAACCAAACGAGGATGCGTTTGAGAAGGAAATGGAGG 1410
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 781 CAAGTGGCGCAGTAGCAGTTTTAAAACCAAATGAGGATGCGTTTGAGAAGGAAATGGAGG 840
Query 1411 GATTGACATCAACAACACGATCAGTCGGGGAATTTCCTCCTGAATTAAAATGCCCATTGT 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GATTGACATCAACAACACGATCAGTCGGGGAATTTCCTCCTGAATTAAAATGCCCATTGT 900
Query 1471 GTAAAGAAGTGATGAGAGATGCTGCACTGGCAAGCAAATGCTGCCTCAAGAGCTACTGTG 1530
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 901 GCAAAGAAGTGATGAGAGATGCTGCACTGGCAAGCAAATGCTGTCTCAAGAGCTACTGTG 960
Query 1531 ACAAGTGTATTAGAGATCACATCATTGCAAAGTCAATGTGTGTTTGTGGAGCAACTCATG 1590
|||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||
Sbjct 961 ACAAGTGTATTAGAGATCACATCATTGCCAAGTCAATGTGTGCTTGTACAGCAACTGATG 1020
Query 1591 TCCTAGCTGATGATCTTCTACCTAACAAAACCCTAAGGGATACTATAAACCGGATATTGG 1650
|||||||||||||||| || || ||||| ||||||||||||||||||||||| || ||||
Sbjct 1021 TCCTAGCTGATGATCTGCTTCCAAACAAGACCCTAAGGGATACTATAAACCGTATCTTGG 1080
Query 1651 AGTCTGGTAACAGTAGTGCTGAGAACGCTGGCAGCATGTGTCAAGTCCAAGATATGGAGT 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGTCTGGTAACAGTAGTGCTGAGAACGCTGGCAGCATGTGTCAAGTCCAAGATATGGAGT 1140
Query 1711 CTGTACGGTGTCCACCTCCCAAGGCTCTATCTCCTACTACATCTGCTGCATCTGGAGGCG 1770
||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||| |||
Sbjct 1141 CTGCACGGTGTCCACCTCCCAAGGTTTTATCTCCTACTACGTCTGCTGCATCTGGAAGCG 1200
Query 1771 AAAAGAAACCAGCTCCTAGTAACAACAATGAGACTTCAACTCTAAAGCCGTCAATAGAAA 1830
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1201 AAAAGAAACCAGCTCCTAGTAACAACAATGAGATTTCAACTCTAAAGCCGTCAATAGAAA 1260
Query 1831 TAGC-AGAGATCACAAGTGCT--T-GGGCGTCTGCAGAAATAGTTAAAGTGGAAAAGCCA 1886
|| | |||||||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 1261 TA-CTGGAGATCACAAGTACTCCTCGGGCGTCTGCAGAAATAGTTAAAGTGGAAAAGCCA 1319
Query 1887 GTTGATGCATCTGCAAACATTCAAGGATCCTCAAATGGCAAGGAAGCAGCAGTTTCACAA 1946
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 GTTGATGCATCTGAAAACATTCAAGGATCCTCAAATGGCAAGGAAGCAGCAGTTTCACAA 1379
Query 1947 CTGAATACGCAGCCCCCCAAGGAAGAAATGCCGCAGCAGGTTGCTTCTGGGGAGCAAGCA 2006
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1380 CTGAATGCGCAGGCCCCCAAGGAAGAAATGCCGCAGCAGGTTGCTTCTGGGGAGC-A--A 1436
Query 2007 GGAAAAAGGAAGAAGAAGAAACCTCGGATGAGTGGAACCGATCTAGCAGGCCCTGACTAT 2066
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1437 GGAAAAAGGAAGAAGAAGAAACCTCGGATGACTGGAACCGATCTAGCAGGCCCTGACTAT 1496
Query 2067 ATGATGCCCATGGGCCCAGGTCCCGGTAATCAGTACTTCAATGGTTTCCAACCCGGCTTC 2126
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1497 ATGATGCCCATGGGTCCAGGTCCCGGTAATCAGTACTTCAATGGTTTGCAACCCGGCTTC 1556
Query 2127 AACGGCGTTCAACATGGGTTCAATGGCGTTCAACCTGGGTTCAATGGCTTTCATCATGGT 2186
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 AACGGCGTCCAACATGGGTTCAATGGCGTTCAACCTGGGTTCAATGGCTTTCATCATGGT 1616
Query 2187 TTCAATGGGTTTCCAGGCCCTTTTCCTGGTGCGATGCCTCCTTTTGTTGGCTATGGATT- 2245
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 TTCAATGGGTTTCCAGGCCCTTTTCCTGGTGCGATGCCTCCTTTTGTTGGCTATGGATTA 1676
Query 2246 -------TGG-C--G--GT--G----TG--ATCCATCCAGATCCTTTCGCTGCACAGGGC 2285
||| | | || | || || |||||||||||||| ||||||||||||
Sbjct 1677 GGCCCCATGGACATGTCGTTTGGCGGTGTGATGCATCCAGATCCTTTTGCTGCACAGGGC 1736
Query 2286 TTTGGGTTCCCTAATATACCACCACCTTATAGGGACCTTGCGGAGATGGGGAATCGTATG 2345
|| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TTCGGGTTCCCAAATATACGACCACCTTATAGGGACCTTGCGGAGATGGGGAATCGTATG 1796
Query 2346 AATCTCCAGCATCCTATAATGGGGAGAGAAGAATTTGAAGCTAAGAAAACTGAGATGAAA 2405
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1797 AATCTCCAGCATCCTATAATGGGGAGAGAAGAATTTGAAGCCAAGAAAGCTGAGATGAAA 1856
Query 2406 AGAAAGCGTGAAAACGAGATTCGACGATCGGAAGGAGGGAATGTCGTCAGGGACAGTGAA 2465
||||||||||| ||||||| |||| || |||||||||||||||||||||||| |||||
Sbjct 1857 AGAAAGCGTGACAACGAGA---GACGGTCAGAAGGAGGGAATGTCGTCAGGGACGGTGAA 1913
Query 2466 AAGAGCAGAATAATGAACAACTCGGCAGTCA-CTTCCTCACCCGTGAAGCCAAAATCTAG 2524
|||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||||||
Sbjct 1914 AAGAGCAGAATAATGAACAACTCGGCAG-CATCTTTCTCACCCATGAAGCCAAAATCTAG 1972
Query 2525 ACAAGGACCTCCGCCGCCGATTTCGTCTGATTACGACCGTCGCAGGCGATCGGATAGATC 2584
|||||||||||| || ||||||||||| ||||| |||||||||||||||||||| ||||
Sbjct 1973 ACAAGGACCTCCACCACCGATTTCGTCGGATTATGACCGTCGCAGGCGATCGGAGAGATT 2032
Query 2585 GTCACCGGAGCGTCAGTCATCTCGAAGGTTCACCTCTCC-TCCTCGATCATCCAGCAGGA 2643
||||| ||||||||||||| ||| ||| ||| ||||| || |||| |||||||||||
Sbjct 2033 ATCACCAGAGCGTCAGTCATATCGGAGGGTCAAATCTCCCTCA-CGATTATCCAGCAGGA 2091
Query 2644 AATCTGAGCGTGATCGTCAC-----C-AT------GACCTCGATTCCGAACACGACCGCC 2691
|||||||| ||||||||||| | || |||||||||||||||||||||||||
Sbjct 2092 AATCTGAGAGTGATCGTCACAATGACCATCACCAAGACCTCGATTCCGAACACGACCGCC 2151
Query 2692 GCCGTGACCGTCCCAGAGAGACAGATCGCAAGCACCGTAAGAGATCCGAAAAGTC-ATCA 2750
|||||||||||| |||||| ||||||||||||| |||||||||||||||||| || ||||
Sbjct 2152 GCCGTGACCGTCACAGAGATACAGATCGCAAGCGCCGTAAGAGATCCGAAAA-TCCATCA 2210
Query 2751 TCGGATCCAACTGTAGAGATAGACGATAACAATAAGTCTAACGTGTTCACTCGGATAAGC 2810
||||| ||||| | |||||| || |||||| | ||||||||||| |||||||||||||||
Sbjct 2211 TCGGAACCAACCGCAGAGATCGATGATAACCACAAGTCTAACGTATTCACTCGGATAAGC 2270
Query 2811 TTTCCAGAGGA--A-TCTTCTGGCAAACAACGAAAGACATCAAAGTCTTCTCCAGCGCCT 2867
|||| |||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2271 TTTCGAGAGGAGGAATCTTCTGGCAAACAACGAAAGACATCAAAGGCTTCTCCAGCGCCT 2330
Query 2868 CCAGAGAGCTCAG-TCGCC-CCAGTTTCATCGGGTCGTCGTCATCACAGTCGAAGAGAAA 2925
||||||||||| | | ||| || |||||||||||||||||||| || ||||||||||||
Sbjct 2331 CCAGAGAGCTC-GCTAGCCGCC-GTTTCATCGGGTCGTCGTCA-CA--GTCGAAGAGAAA 2385
Query 2926 GAGAGATGGTGGAATACGATTCAAGTGATGATGAAGACAGACATTTCAAGAGGAAGCCAT 2985
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2386 GAGAGATGGTAGAATACGATTCAAGTGATGATGAAGACAGACATTTCAAGAGGAAGCCAT 2445
Query 2986 CAAGGTACAAGCGATCTCCTTCGGTTGCACCTTCTGACGCCGGTGATGAGCATTTCCGTC 3045
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 2446 CAAGGTACAAGCGATCTCCTTCGGTGGCACCTTCCGACGCCGGTGATGAGCATTTCCGCC 2505
Query 3046 ATTCTAAGCGATCTAAAGGAGAAAGAGCGCGAGCTTGATTCGAAGAA-TGAAGA 3098
|||| |||||||| |||||||||||||||||||||||||||||| || | ||||
Sbjct 2506 ATTCCAAGCGATCAAAAGGAGAAAGAGCGCGAGCTTGATTCGAACAAATAAAGA 2559
> Ahg494238 jgi|Araly1|494238|fgenesh2_kg.8__54__AT5G47430.1
Length=3146
Score = 1347 bits (729), Expect = 0.0
Identities = 1728/2184 (79%), Gaps = 174/2184 (8%)
Strand=Plus/Plus
Query 598 CAATGGCAATATATTACAAGTTTAAGAGTGCGAGGGATTATGATACCATCT-CCATGGAT 656
|||||||||| |||||||||||||||||||| ||||||||||||||||| | ||||||||
Sbjct 289 CAATGGCAATTTATTACAAGTTTAAGAGTGCAAGGGATTATGATACCAT-TGCCATGGAT 347
Query 657 GGTCCTTTTATAACAGTTGGT-TTACTCAAAGAAAAAATTTACGAAACTAAGCATTTGGG 715
|||||||||||| | || ||| || |||||||| ||||||| ||||||||||||||||||
Sbjct 348 GGTCCTTTTATATCCGTCGGTATT-CTCAAAGACAAAATTTTCGAAACTAAGCATTTGGG 406
Query 716 AAGTGGTAAAGACCTTGACATTGTCATCTCTAATGCCCAAACTAATGAAGAATATCTGGA 775
| ||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||||
Sbjct 407 CACTGGTAAAGACCTTGATATTGTCGTCTCCAATGCCCAAACTAATGAAGAGTATCTGGA 466
Query 776 TGAAGCAATGTTAATACCAAAAAATACTTCTGTGCTAATTCGCCGGGTCCCTGGACGCCC 835
||||||||||||||| ||||| ||||| ||||| || ||||| || || || ||||||||
Sbjct 467 TGAAGCAATGTTAATCCCAAAGAATACATCTGTCCTTATTCGTCGAGTTCCAGGACGCCC 526
Query 836 TCGCATCAGAATTATTACCAGAGAAGAGCCGAGAGTCGAGGATAAAGTGGAAAACGTTCA 895
|||||||| | |||| |||| | |||||| ||| ||||| |||||||||||||||||||
Sbjct 527 TCGCATCACAGTTATCACCACACCAGAGCCTAGAATCGAGAATAAAGTGGAAAACGTTCA 586
Query 896 AGCTGATATGAACAATGTTATTACTGCTGATGCATCT-CC-C-----GT--TGAAGATGA 946
||||| | | |||| || | | | ||| ||||| || | | ||||||||
Sbjct 587 GGCTGAAACCACCAATTTTCCTGTTACCGATCCATCTGCCACTAAATATCCTGAAGATG- 645
Query 947 ATT-CGATGAGTTTGGGAATGATTTGTATTCAATTCCTGATGCCCCAGCA-G-TC--CAT 1001
||| || |||||||||| |||||| ||||| ||||||||||||| || | | | |||
Sbjct 646 ATTGGGACGAGTTTGGGACTGATTTATATTCCATTCCTGATGCCCAAG-ATGCCCAGCAT 704
Query 1002 -TCTAATA-ACCTATGTCATGATTC-TGCA-C--CAG-C-TG--A-T-GATGAAGAAACC 1049
| || || || | ||| ||| || |||| | ||| | | | | |||||||||| |
Sbjct 705 AT-TATTATTCC-ACGTCCTGA-TCTTGCACCAGCAGACGAGAAAGTAGATGAAGAAAGC 761
Query 1050 AAGCTAAAGGCATTAATTGACACTCCAGCACTAGACTGGCATCAACAAGGTGCAGATAGT 1109
|| | ||||| | ||||||||||||||||| |||||||| | ||||||| |||||| |
Sbjct 762 AAAATCCAGGCACTGATTGACACTCCAGCACTTGACTGGCAACGACAAGGTCCAGATACT 821
Query 1110 T-TTGGCCCGGGTAGAGGTTATGGGAGGGGTATGGCTGGAAGGATGGGTGGCCGCGGTTT 1168
| | || | ||| |||||||| || ||||||||| ||||||||||| ||| || |||||
Sbjct 822 TATGGGGCTGGG-AGAGGTTACGGAAGGGGTATGCCTGGAAGGATGAATGGACGTGGTTT 880
Query 1169 TGGAATGGAGAGGACAACACCGCCACCAGGCTATGTTTGCCATCGGTGCAATGTTTCTGG 1228
||||||||| |||| ||| || || ||||| ||||| |||||||| |||||||| ||||
Sbjct 881 TGGAATGGAAAGGAAAACGCCACCTCCAGGATATGTGTGCCATCGATGCAATGTCCCTGG 940
Query 1229 ACATTTTATTCAACACTGCTCCACAAACGGTA-ATCCTAACTTTGATGTTAAGAGAGTTA 1287
|||||||||||| || ||| ||||||| || | | ||||||| |||||||||||||||||
Sbjct 941 ACATTTTATTCAGCATTGCCCCACAAATGG-AGACCCTAACTATGATGTTAAGAGAGTTA 999
Query 1288 AACCACCTACTGGTATCCCCAAGTCGATGCTGATGGCAACCCCAAATGGCTCTTACTCCT 1347
| ||||||||||||||||||||||| ||| ||||||| ||||| |||| ||||| ||||
Sbjct 1000 AGCCACCTACTGGTATCCCCAAGTCCATGTTGATGGCGACCCCTGATGGTTCTTATTCCT 1059
Query 1348 TGCCAAGTGGCGCAGTAGCAGTTTTAAAACCAAACGAGGATGCGTTTGAGAAGGAAATGG 1407
|||||||||||||||| |||||| | |||||||| |||||||| ||||||||||||||||
Sbjct 1060 TGCCAAGTGGCGCAGTTGCAGTTCTGAAACCAAATGAGGATGCTTTTGAGAAGGAAATGG 1119
Query 1408 AGGGATTGACATCAACAACACGATCAGTCGGGGAATTTCCTCCTGAATTAAAATGCCCAT 1467
|||||||| ||||||||||||| || || || ||| |||| ||||| ||||||||||||
Sbjct 1120 AGGGATTGCCATCAACAACACGTTCTGTAGGAGAACTTCCGCCTGAGCTAAAATGCCCAT 1179
Query 1468 TGTGTAAAGAAGTGATGAGAGATGCTGCACTGGCAAGCAAATGCTGCCT-CAAGAGCTAC 1526
| || |||||||| |||| ||||||||| || |||||||||| || | ||| |||| |
Sbjct 1180 TATGCAAAGAAGTAATGAAAGATGCTGCGCTTACAAGCAAATGTTG-TTACAAAAGCTTC 1238
Query 1527 TGTGACAAGTGTATTAGAGATCACATCATTGCAAAGTCAATGTGTGTTTGTGG-AGCAAC 1585
|||||||||||||| ||||||||||| ||| |||||||||||||||||||||| || | |
Sbjct 1239 TGTGACAAGTGTATCAGAGATCACATTATTTCAAAGTCAATGTGTGTTTGTGGAAG-ACC 1297
Query 1586 TCATGTCCTAGCTGATGATCTTCTACCTAACAAAACCCTAAGGGATACTATAAACCGGAT 1645
|||| || ||||| ||||||||||| ||||| ||||| |||||||| |||||||| ||
Sbjct 1298 AGATGTACTTGCTGACGATCTTCTACCAAACAAGACCCTCAGGGATACCATAAACCGTAT 1357
Query 1646 ATTGG-AGTCTGGTAACAG-TAGTGCTGAGAACGCTGGCAGC-ATGTGTCA-AGTCCAAG 1701
|||| || |||| ||| | ||| |||||||||| |||||| || | || | ||| ||
Sbjct 1358 TTTGGAAG-CTGGAAAC-GATAGCACTGAGAACGCGGGCAGCGTTG-GCCATA-TCCCAG 1413
Query 1702 ATATGGAGTCTGTACGGTGTCCACCTCCCAAGGCTCTATCTCCTACTACATCTGCTGCAT 1761
|| ||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1414 ATTTGGAGTCTGCACGCTGTCCACCTCCCAAGGCTCTATCTCCTACTACATCTGTTGCAT 1473
Query 1762 CTGGAGGCGAAAAGAAACCAGCTCCT-AGTAACAACAATGA-GACTTCAACTCT-AAAGC 1818
|| |||||| |||||||||| |||| |||||||| ||||| | ||||||| || |||||
Sbjct 1474 CTAAAGGCGAGAAGAAACCAG-TCCTTAGTAACAATAATGATG-CTTCAAC-CTTAAAGC 1530
Query 1819 CGTCAATAGAAA-TAGCAGAGATCACAAGTGCT--T-GGGCGTCTGCAGAAATAGTTAAA 1874
|| |||| | | | ||||||||||||||||| | |||| ||||||||| |||||
Sbjct 1531 CGCCAAT-GTATGTTGCAGAGATCACAAGTGCCCCTCGGGCATCTGCAGAA---GTTAAT 1586
Query 1875 GTGG-AAAAGCCAGTTGATGCATCTGCAAA-CATTCAAGGATCC-TCAAATG-GCAAGGA 1930
|||| |||| ||||||||||||| || ||| || |||||| ||| | | || | ||| |
Sbjct 1587 GTGGGAAAA-CCAGTTGATGCATGTG-AAAGCACTCAAGGGTCCGTGAT-TGTGAAAG-A 1642
Query 1931 AGCAGCAGTTTCACAACT-GAATACGCA-GCCCCCCAAGGAAGAAATGCCGCAGCAGGTT 1988
|||| |||||||| || | ||||||||| |||||| ||||||||| ||| ||||||||||
Sbjct 1643 AGCAACAGTTTCA-AAGTTGAATACGCAAGCCCCC-AAGGAAGAAGTGCAGCAGCAGGTT 1700
Query 1989 GCTTCTGGGGAGCAAGCAGGAAA-AAGGAAGAAGAAG-AA-A---CCTCGGA-TG-AG-- 2038
||| |||| |||| || | ||| ||| || || || || | ||| ||| || ||
Sbjct 1701 GCTGCTGGAGAGCCAGGAAAAAAGAAGAAAAAAAAAACAAGAGTGCCTGGGAATGCAGAC 1760
Query 2039 -TG----G-AA-CC-G----A--TCTAGCAGGCCCTGACTATATGATGCCCATGGGCCCA 2084
|| | || || | | |||||||||| ||||||||||||||| ||||| |||
Sbjct 1761 ATGCAATGGAATCCTGTGCCAGATCTAGCAGGCACTGACTATATGATGCAAATGGGACCA 1820
Query 2085 GGTCCCGGTAATCAGTACTTCAATGGTTTCCAACCCGGCTTCAACGGCGTTCAAC-ATGG 2143
||||| | ||||||||||| || | || ||||| ||||||||||| |||| | ||
Sbjct 1821 GGTCC-G-----CAGTACTTCAACGGAATGCAGCCCGGTTTCAACGGCGTCCAACCA-GG 1873
Query 2144 GTTCAATGGCGTTCAACCTGGGTTCAATGGCTTTCATCATGG-TTTCAATGGGTTTCCAG 2202
||||| || ||||||||||| |||||||||||||| | ||| ||| ||||| ||| ||
Sbjct 1874 CTTCAACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTT-AATGGATTTGGAG 1932
Query 2203 GCCCTTTTCCTGGTGCGATGCCTCC-TTT-TG--TT--GG------C----T--A--TGG 2242
|||| ||||| || || |||||||| ||| || || || | | | |||
Sbjct 1933 GCCCGTTTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACGCAATGGACATGG 1992
Query 2243 -ATTTGGCGG---T--G--T--GATCCATCCAGATCCTTTCGCTGCACAGGGCTTTGGGT 2292
|||||| || | | | ||| ||||||||||| ||| |||||| || |||||||
Sbjct 1993 GATTTGGTGGGGGTATGAATATGATGCATCCAGATCCATTCATTGCACAAGGATTTGGGT 2052
Query 2293 TCCCTAATATACCACCACCTTATAGGGACCTTGCGGAGATGGGGAATCGTATGAATCTCC 2352
||||||||||||||||||| |||||||||| ||||| ||||| || || ||||||||||
Sbjct 2053 TCCCTAATATACCACCACCCCATAGGGACCTAGCGGAAATGGGAAACCGAATGAATCTCC 2112
Query 2353 AGCATCCTATAATGGGGAGAGAAGAATTTGAAGCTAAGAAAA-CTGAGATGAAAAGAAAG 2411
| | | |||| ||||| ||||| ||| |||||| |||| ||||||| ||||||
Sbjct 2113 AACGTGCTATGATGGGCAGAGATGAAGCCGAAGCTC-GAAATGCTGAGATTTTAAGAAAA 2171
Query 2412 CGTGAAAACGAGATTCGACGATCGGAAGGAGGGAA--TGTCGTCAGGGACAGTGAAAAGA 2469
|| |||||||||| ||||| | ||||| ||||| ||| | ||||| | || || |
Sbjct 2172 CGCGAAAACGAGA---GACGACCTGAAGGTGGGAAGATGTT-T-AGGGATGGAGAGAATA 2226
Query 2470 GCAGAAT-A--ATGAACAACTCGGCAGT-CA-CTTC--C-TCACCCGTGAAGCC-AA-AA 2519
||||||| | ||||||||| || | | || | || | ||| || | || || || ||
Sbjct 2227 GCAGAATGATGATGAACAAC--GGAACTTCAGCCTCGGCATCATCCATCAACCCTAATAA 2284
Query 2520 -TCTAGACAAGGACCTCCGCCGCCGATTTCGTCTGATTACGACCGTCGCAGGCGATCGGA 2578
|||||||||| ||||| || |||| | | | |||||||| || ||||| ||| ||||
Sbjct 2285 ATCTAGACAAGCCCCTCCTCCACCGACT-CA-C-GATTACGATCGCCGCAGACGACCGGA 2341
Query 2579 TAGATCGTCACCGGAGCGTCAGTCATCTCG-AAGGTTCACCTCTCC-TC-CTCGATCATC 2635
|||| || || |||| || | || | || || | || |||||| || | |||| ||
Sbjct 2342 GAGATTATCCCCAGAGCATCCGCCACCGCGTAAAAT-CATCTCTCCGTCACGCGAT--TC 2398
Query 2636 CA-GCAGGAAATCTGAGCGTGATC 2658
|| | || |||||||||||| |||
Sbjct 2399 CAAG-AGAAAATCTGAGCGTTATC 2421
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118651113175
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5