BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17420.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493136 jgi|Araly1|493136|fgenesh2_kg.7__2569__AT4G17420.1 1441 0.0
> Ahg493136 jgi|Araly1|493136|fgenesh2_kg.7__2569__AT4G17420.1
Length=1007
Score = 1441 bits (780), Expect = 0.0
Identities = 844/875 (96%), Gaps = 4/875 (0%)
Strand=Plus/Plus
Query 185 GGTTTTCACCGCCATGGCTGCTCCGTTTTTCTCTACTCCATTTCAGCCTTATGTCTATCA 244
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 GGTTATCACCGCCATGGCTGCTCCGTTTTTCTCTACTCCATTTCAGCCTTATGTCTATCA 194
Query 245 GAGTCAAGAAGATACGATCACACCTTTCCAAATTTTGGGTGGTGAAGCACAGGTTGTTCA 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 195 GAGTCAAGAAGATACGATCACACCTTTCCAAATTTTGGGTGGTGAAGCACAGGTTGTTCA 254
Query 305 GATAATGTTAAAACCACAAGAGAAGGTCATTGCTAAGCCTGGTTCAATGTGCTACATGTC 364
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 255 GATAATGTTAAAACCACAGGAGAAGGTCATTGCTAAGCCTGGTTCAATGTGCTACATGTC 314
Query 365 TGGGTCCATTGAGATGGATAATACTTATACCCCTGAACAAGAAGTTGGAGTTGTACAATG 424
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TGGCTCCATTGAGATGGATAATACTTATACCCCTGAACAAGAAGTTGGAGTTGTACAATG 374
Query 425 GATTTTAGGAAAGAGTGTTAGTAGTATAGTTCTTCGTAACACTGGGCAAAACGATGGATT 484
||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||
Sbjct 375 GATTTTAGGAAAGAGTGTTAGCAGTATTGTTCTTCGCAACACCGGGCAGAACGATGGATT 434
Query 485 TGTTGGTATCGCTGCACCTTCTTTGGCAAGGATTCTCCCACTTGATTTGGCAATGTTTGG 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 435 TGTTGGTATCGCTGCACCTTCTTTGGCAAGGATTCTCCCACTTGATTTGGCAATGTTTGG 494
Query 545 TGGGGACATCTTATGCCAGCCAGATGCATTTCTCTGTTCTGTCCATGATGTGAAGGTCGT 604
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 495 TGGGGACATCTTATGCCAGCCAGATGCATTTCTTTGCTCTGTCCATGATGTGAAGGTCGT 554
Query 605 AAACACTGTGTATCAGAGACATCGAGCAAGAAACATTGCTGCA-GCTGGGGCTGAGGGGG 663
|||| || | || ||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 555 AAACTCTATTTACCAGAGACATCGAGCAAGAAACATTGCT-CAAGCTGGGGCTGAGGGGT 613
Query 664 TTCTGAGACAAAGGCTTTCTGGTCAGGGTCTTGCTTTTATTATCGCTGGCGGCTCTGTTG 723
|||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 614 TTCTGAGACAAAGGCTATCTGGGCAGGGTCTTGCTTTTATTATCGCTGGTGGCTCTGTTG 673
Query 724 TACAGAAAAACCTGGAGGTGGGAGAAGTTCTCACCATTGACGTTTCTTGCATTGCCGCTC 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 TACAGAAAAACCTGGAGGTGGGAGAAGTTCTCACCATTGACGTTTCTTGCATTGCCGCTC 733
Query 784 TCACTCCGTCGATCAATTTCCAAATCAAATACAATGCTGCTCCTGTAAGACGGGCAGT-T 842
||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| |
Sbjct 734 TCACTCCCTCGATCAACTTCCAAATCAAATACAATGCTGCACCTGTAAGACGAGCAGTCT 793
Query 843 TTCGGGGGTGATAATGTAGTAACAGCAACTCTAACGGGACCAGGCATCGTGTTCATCCAA 902
|| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 794 TT-GGGGGTGATAACGTAGTAACAGCGACTCTAACGGGACCAGGCATCGTGTTCATCCAA 852
Query 903 AGTTTACCGTTTCATCGACTCTCGCAGCGAATTGCAAGGTCGGTGACGTCCCCAAATATG 962
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 853 AGTTTACCGTTCCATCGACTCTCGCAGCGAATTGCAAGGTCGGTGACGTCCCCAAATATG 912
Query 963 AGAGAAAATCCAAGATTATTAGTTCAAATAGGGTTATTCATATTTCTTGCATACGTTGTA 1022
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 913 AGAGAAAATCCAAGATTATTAGTTCAAATAGGATTATTCATATTTCTTGCATACGTTGTA 972
Query 1023 ATTGTGTCCTCTTTAATCCTTACTGAAATGTGAAA 1057
|||||||| ||||||||||||||||||||||||||
Sbjct 973 ATTGTGTCATCTTTAATCCTTACTGAAATGTGAAA 1007
Score = 93.5 bits (50), Expect = 3e-18
Identities = 50/50 (100%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 1 GGGTTCCCGTCGGTGACATCCACCGCGAACATTTCGACCGGAGTTTTGAG 50
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGGTTCCCGTCGGTGACATCCACCGCGAACATTTCGACCGGAGTTTTGAG 50
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5