BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17430.1
Length=1912
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493135 jgi|Araly1|493135|fgenesh2_kg.7__2568__AT4G17430.1 2636 0.0
Ahg946487 jgi|Araly1|946487|scaffold_702716.1 433 3e-120
Ahg890477 jgi|Araly1|890477|Al_scaffold_0007_2463 158 2e-37
> Ahg493135 jgi|Araly1|493135|fgenesh2_kg.7__2568__AT4G17430.1
Length=1843
Score = 2636 bits (1427), Expect = 0.0
Identities = 1675/1792 (93%), Gaps = 27/1792 (2%)
Strand=Plus/Plus
Query 19 GCAAAAAACATGAACAACTTCTTCAATCCCAGTAGACCAAGCCCACGTCCATGGCCAAAC 78
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1 GCAAAAAACATGAACAACTTCTTCAATCCCAGTAGACCAAGCCCGCGTCCATGGCCGAAC 60
Query 79 AGGAAGAAGCAAACCGACAAATCTGCGATATTTC-TTTGCTCCGTTTCTATACTTGTTGT 137
||||||||||||||| |||||||||| || |||| |||||||||||||| ||||||||||
Sbjct 61 AGGAAGAAGCAAACCAACAAATCTGCCAT-TTTCATTTGCTCCGTTTCTCTACTTGTTGT 119
Query 138 GTTCTTCATCGTCG---TCTTCTTCATCACTTACTCCGAGATGCCCAAGTCCTTGTTCTC 194
|||||| |||||| |||||||||||||||||||||||||||| |||||| |||||||
Sbjct 120 TTTCTTCGTCGTCGTCTTCTTCTTCATCACTTACTCCGAGATGCCTAAGTCCCTGTTCTC 179
Query 195 AATCTCTGCATTTTCTGGATCCGTTCAATTCCCTCAGTGCAGATCCGAGATACTAACCCG 254
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AATCTCTGCCTTTTCTGGATCCGTTCAATTCCCTCAGTGCAGATCCGAGATACTAACCCG 239
Query 255 AACTCTTCTAGGTCAGAAGTTTCTCTGGTACGCTCCTCACAGTGGATTCAGTAATCAGCT 314
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACTCTTCTAGGTCAGAAGTTCCTCTGGTACGCTCCTCACAGTGGATTCAGTAATCAGCT 299
Query 315 ATCGGAATTTAAGAATGCGCTTCTT-ATGGCGGGAATTCTTAATCGGACCCTAATTATTC 373
|||||| |||||||||||| || || ||||| ||||||||||||||||||||||||||||
Sbjct 300 ATCGGAGTTTAAGAATGCGGTT-TTAATGGCTGGAATTCTTAATCGGACCCTAATTATTC 358
Query 374 CTCCGATTCTGGATCATCACGCCGTTGCTCTCGGTAGTTGTCCTAAATTTAGGGTTTTGA 433
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 359 CTCCGATTCTGGATCATCACGCCGTCGCTCTCGGTAGCTGTCCTAAATTTAGGGTTTTGA 418
Query 434 GTCCCAGCGAGATACGAATCTCAGTTTGGAATCATTCAATTGAGCTTCTTAAGACTGACA 493
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 419 GCCCCAGCGAGATACGAATCTCAGTTTGGAATCATTCAATTGAGCTTCTTAGGACTGACA 478
Query 494 GGTACGTTTCGATGGCTGATATTGTAGACATTTCGTCGCTGGTATCTTCTTCGGCTGTTC 553
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 479 GGTACGTTTCGATGGCTGATATTGTAGACATTTCGTCTCTGGTATCTTCTTCGGCTGTTC 538
Query 554 GAGTCATTGATTTTAGGTACTTTGCATCACTACAGTGTGGTGTTGACTTGGAGACTCTAT 613
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 GAGTCATTGATTTTAGGTACTTTGCATCACTACTGTGTGGTGTTGACTTGGAGACTCTAT 598
Query 614 GCACTGATGATTTAGCTGAACAGTCTCAGGCTTATGAGTCACTGAAACAGTGTGGCTATT 673
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 GCTCTGATGATTTAGCTGAACAGTCTCAGGCTTATGAATCACTGAAACAGTGTGGCTATT 658
Query 674 TGTTATCTGGAGTTCGTGGTAATGTAGATAAATGTTTGTATGCTGTGGATGAAGATTGTA 733
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 659 TGTTATCTGGAGTTCGTGGCAATGTGGATAAATGTTTGTATGCTGTGGATGAAGATTGTA 718
Query 734 GAACCACTGTTTGGACTTATAAAAATGGAGAAGCTGATGGGAGATTAGATTCGTTCCAGC 793
||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 719 GAACCACAGTTTGGACTTATAAAAACGGAGATGCTGATGGAAGATTAGATTCGTTCCAGC 778
Query 794 CTGATGAGAAGCTCAAGAAGAAAAAGAAATTGTCCAACGTGAGAAGGCGAAGAGATGTGT 853
||||||||||||| |||||||| |||||||||||| | ||||||||||| |||||| |||
Sbjct 779 CTGATGAGAAGCTTAAGAAGAAGAAGAAATTGTCCTATGTGAGAAGGCGTAGAGATTTGT 838
Query 854 ATAAGACTCTTGGACATGGTACAGAAGCTGAGTCTGCAGCTATTCTAGCATTTGGGAGCC 913
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 839 ATAAGACTCTTGGACATGGTACAGAAGCCGAGTCTGCAGCTATTCTAGCATTTGGGAGCC 898
Query 914 TCTTCACAGCTCCATACAAAGGCTCAGAGCTGTATATCGATATCCATAAATCTCCAAAGA 973
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 899 TCTTCACAGCTCCATACAAAGGCTCAGAACTGTATATCGATATACATAAATCTCCAAAGA 958
Query 974 TAAAATCTTTGGTTGAGAAGGTCGATTTCCTTCCTTTTGTTCGAGAGATAATGATCGCGG 1033
||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||
Sbjct 959 TAAAACCTTTGGTTGAGAAGGTTGATTTCCTTCCTTTTGTTCGAGAGATAATGAGGGCGG 1018
Query 1034 GAAAGAAATTTGCTTCAGAAACCATAAAGGCGCCGTTTCTTTGTGCACAACTTAGATTAC 1093
| ||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1019 GCAAGAAATTTGCCTCGGAAACCATAAAGGCACCGTTTCTTTGTGCACAGCTTAGATTAC 1078
Query 1094 TAGATGGCCAGTTCAAGAATCATCGGGAGAGCACTTTTACGGGTTTATATCAGAAGTTGG 1153
|||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 1079 TAGATGGCCAGTTCAAGAATCATCGGGAGAGCACGTTTATGGGTTTATACCAGAAGTTGG 1138
Query 1154 AAGCTTTGAGCGTTAAGAATCCTGGTCTAATTAATGTGTTTGTAATGACAGACCTTCCTG 1213
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 AATCTTTGAGGGTAAAGAATCCTGGTCTAATTAATGTGTTTGTAATGACAGACCTTCCTG 1198
Query 1214 AATTTAACTGGACCGGAACTTACTTGGGTGATTTGTCTAAGAACTCTACAAATTTCAAGC 1273
|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AAAGTAACTGGAACGGAACTTACTTGGGTGATTTGTCTAAGAACTCTACAAATTTCAAGC 1258
Query 1274 TCCACTTTATAGGGGAACAAGATGAATTCTTAGCGCGAACAGAGCATGAACTTGATTCAG 1333
| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||| |
Sbjct 1259 TTCACTTTATAGGGGAACAAGATGAATTCTTAGTGCGAACAGAGCATGAGCTTGCTTCTG 1318
Query 1334 CGAGTCACGGCCAGAAATTTGGGTCTATTCCGATGAGTCTTGATAGTATAAAAAAGATGC 1393
|| ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1319 CGGGTCACGGCCAGAAATTTGGGTCTATTCCGATGAGTCTGGATAATATAAAAAAGATGC 1378
Query 1394 AGACCCATTGTTAC-CCTCATGGAGGATCCAATGTGCAGCTTTACATAGAGGAAGCTGTT 1452
||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 AGAACCATTGTT-CTCCTCATGGAGGATCCAATGTGCAGCTTTACATAGAGGAAGCTGTT 1437
Query 1453 TGTAGCTGTGCTTCACTGGGTTTTGTTGGTACTCCAGGGTCTACAATAGCTGATAGTGTA 1512
|| |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1438 TGCAGCTGTGCGTCATTGGGTTTTGTTGGTACTGCAGGGTCTACAATAGCTGATAGTGTA 1497
Query 1513 GAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACT-GCATTTCTATT 1571
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1498 GAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACTTGCATTTCTATT 1557
Query 1572 GGATTCATCTGGTGGATGAGCCAATGTGTAGTGATTTTATTAAGTTTTGCCGGTCTTTGT 1631
| |||||||| |||||||||||||| | |||| ||| ||||||||||||
Sbjct 1558 GTATTCATCTACTGGATGAGCCAATGCGGAGTG----------GTT--GCCGGTCTTTGT 1605
Query 1632 ATAGAGATGGATAGAGATAGATGATAGATCTGTCATCTG-TCTCCACTTGAAGTTATTGG 1690
|||||||||| ||||||||||| | ||||||| || ||||||||||| || |||||
Sbjct 1606 ATAGAGATGGGTAGAGATAGATCTTTCATCTGTC-TCCACTCTCCACTTGAGGT-ATTGG 1663
Query 1691 TGATGAAAACAGGCTCTTAAATTGTTTTGTGTTGTTAAGTTATTTGGGAAACTATCTAAG 1750
|| |||||||||||| || |||||||||||||||||||||||||||||||||||| ||
Sbjct 1664 TGGTGAAAACAGGCTTTTGGGTTGTTTTGTGTTGTTAAGTTATTTGGGAAACTATCTTAG 1723
Query 1751 TTTCTTATTAATAGA-TGAA-GCTACTTGGTTCCTTTCTGATTATTCACACA 1800
||||||||||||||| | || ||||||||||||||||||| | |||||||||
Sbjct 1724 TTTCTTATTAATAGAATTAAAGCTACTTGGTTCCTTTCTGGTAATTCACACA 1775
Score = 110 bits (59), Expect = 5e-23
Identities = 66/69 (96%), Gaps = 1/69 (1%)
Strand=Plus/Plus
Query 1845 AGGTTTTGTGAGTTCTGTAGATGT-CTCTAGTGGTCGACAAGATTTGTAATTGTTGTACC 1903
|||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1775 AGGTTTTGTGAGTTTTGTAGATGTCCTCTTGTGGTCGACAAGATTTGTAATTGTTGTACC 1834
Query 1904 AATGTCTTT 1912
|||||||||
Sbjct 1835 AATGTCTTT 1843
> Ahg946487 jgi|Araly1|946487|scaffold_702716.1
Length=637
Score = 433 bits (234), Expect = 3e-120
Identities = 310/344 (90%), Gaps = 15/344 (4%)
Strand=Plus/Plus
Query 52 AGACCAAGCCCACGTCCATGGCCAAACAGGAAGAAGCAAACCGACAAATCTGCGATATTT 111
||| ||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 4 AGATCAAGCCCGCGTCCATGGCCGAACAGGAAGAAGCAAACCAACAAATCTGCGATATTT 63
Query 112 CTTTGCTCCGTTTCTATACTTGTTGTGTTCTTCATC--G-TCGTCTTCTTCATCACTTAC 168
|||||||||||||| |||||||||| |||||| || | ||||||||||||| ||||||
Sbjct 64 GTTTGCTCCGTTTCTCTACTTGTTGTTTTCTTCGTCGTGTTCGTCTTCTTCATTACTTAC 123
Query 169 TCCGAGATGCCCAAGT-CCT---TGTTCTCAATCTCTGCATTTTCTGGATCCGTTCAATT 224
||||||| ||||||| ||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 124 CCCGAGATACCCAAGTCCCTCCCTGTTCTCGATCTCTGCATTTTCTGGATCCGTCCAATT 183
Query 225 CCCTCAGTGCAGATCCGAGATACTAACCCGAACTCTTCTAGGTCAGAAGTTTCTCTGGTA 284
| | | |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 184 --C-C----C-GATCAGAGATACTAACCCGAACTCTTCTAGGTCAGAAGTTTCTCTGGTA 235
Query 285 CGCTCCTCACAGTGGATTCAGTAATCAGCTATCGGAATTTAAGAATGCGCTTCTTATGGC 344
|||||||||| |||||| ||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 236 CGCTCCTCACTGTGGATACAGCAATCAGCTATCGGAATTTAAGAATGCGGTTCTTATGGC 295
Query 345 GGGAATTCTTAATCGGACCCTAATTATTCCTCCGATTCTGGATC 388
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 296 GGGAATTCTTAATCGGACCCTAATTTTTCCTCCGATTCTGGATC 339
Score = 176 bits (95), Expect = 5e-43
Identities = 115/125 (92%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1446 AGCTGTTTGTAGCTGTGCTTCACTGGGTTTTGTTGGTACTCCAGGGTCTACAATAGCTGA 1505
||||||||| |||||||| ||| || || |||||||||| |||| ||| ||||||||||
Sbjct 512 AGCTGTTTGCAGCTGTGCGTCATTGAATTCTGTTGGTACTGCAGGATCTTCAATAGCTGA 571
Query 1506 TAGTGTAGAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACTGCATT 1565
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 572 TAGTGTGGAGATGATGAGGAAATACAATGCGTGTAGTAGTAGTTGAACTCAGACTGCATT 631
Query 1566 TCTAT 1570
|||||
Sbjct 632 TCTAT 636
> Ahg890477 jgi|Araly1|890477|Al_scaffold_0007_2463
Length=420
Score = 158 bits (85), Expect = 2e-37
Identities = 93/97 (96%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 662 AGTGTGGCTATTTGTTATCTGGAGTTCGTGGTAATGTAGATAAATGTTTGTATGCTGTGG 721
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 297 AGTGTGGCTATTTGTTATCTGGAGTTCGTGGTAATCTAGATAAATGTTTGTATGCTGTTG 238
Query 722 ATGAAGATTGTAGAACCACTGTTTGGACTTATAAAAA 758
||||||||||||||||||| |||||||| ||||||||
Sbjct 237 ATGAAGATTGTAGAACCACAGTTTGGACGTATAAAAA 201
Score = 76.8 bits (41), Expect = 5e-13
Identities = 49/53 (92%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 1569 ATTGGATTCATCTGGTGGATGAGCCAATGTGTAGTGATTTTATTAAGTTTTGC 1621
|||||||||||||| |||||||||||||||| |||||||| || |||||||||
Sbjct 401 ATTGGATTCATCTGCTGGATGAGCCAATGTGGAGTGATTTGATCAAGTTTTGC 349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71838202070
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5