BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17440.1
Length=1061
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493134 jgi|Araly1|493134|fgenesh2_kg.7__2567__AT4G17440.1 1443 0.0
> Ahg493134 jgi|Araly1|493134|fgenesh2_kg.7__2567__AT4G17440.1
Length=1020
Score = 1443 bits (781), Expect = 0.0
Identities = 901/959 (94%), Gaps = 8/959 (1%)
Strand=Plus/Plus
Query 27 tctctctctcctctctGCTTTTTACCTTCTAGGGTTTTTGATCATCTCTCAGGTGAATAC 86
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 35 TCTCTCTCTCCTCTCTGCTTTTTGCTTTCTAGGGTTTTTGATCATCTCTCAGGTGAATAG 94
Query 87 GTTTTGGTATAATCTCATACCAATGTCTGCGAATTCCAAGTCGGAGAGGTCTGCTTCTCA 146
|||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 95 GTTTCGGTATAATCTCATCCCAATGTCTGCTAATTCCAAGTCGGAGAGGTCTGCTTCTCA 154
Query 147 ATCGGCGGAGACGGTGGCTGTTTCTAACCGTGTCGTGGCGTCACGGTCAAGTCGTCAGCC 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 ATCGGCGGAGACGGTGGCTGTTTCTAACCGTGTCGTGGCGTCACGGTCAAGTCGTCAGCC 214
Query 207 GCGTCTCTCTTTCTCCTCCTTTGCTCCCTCATCAGAGCACGATAACCTGAAGAAGCTGAA 266
||| ||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct 215 GCGGCTCTCTTTCTCCTCCTTTGCTCCGTCATCAGAGCACGATTACTTGAAGAAGCTGAA 274
Query 267 ATCCGATGAGATTTCTCCCG-Cgagagaggaagtgccggtgtcggtgaaggagagagaag 325
|||||||||||||||||| | ||||||||||||| || ||||||||||||||||||||||
Sbjct 275 ATCCGATGAGATTTCTCC-GACGAGAGAGGAAGTTCCAGTGTCGGTGAAGGAGAGAGAAG 333
Query 326 aaacggaggaggaggaagcgaagaggaCGTGGAATCTTCGTCCGAGGAAGGCTTATGGTG 385
|||||||||||||||||||||||||||| |||||||| | ||||||||||||| |||||
Sbjct 334 AAACGGAGGAGGAGGAAGCGAAGAGGACTTGGAATCTAAGGCCGAGGAAGGCTTTTGGTG 393
Query 386 GTTCGAAGAAAGGAAACGGCGTGTTCACGGCGGAGGTTTGCGGTGGCGGCGGAGGAGGAG 445
||| |||||||||||||||||| ||| || ||||||| ||||||||||| ||||||||||
Sbjct 394 GTTTGAAGAAAGGAAACGGCGTATTCGCGACGGAGGTGTGCGGTGGCGGAGGAGGAGGAG 453
Query 446 --G-TTCGGAGGTGAAGAATCAGAAATCAGGCGCAGGAATTGAGCCGAAATCGAACAGGC 502
| ||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||
Sbjct 454 TAGGTTCGGAGGTGAAGAATCAGAAATCAAGCGGAGGAATAGAGCCGAAATCGAACAGGC 513
Query 503 AGAGAGGAATCCCGGCGGAATCACCCGGATTAGGCGGTGGTGAGGTTGCAAACGAGAATC 562
|||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 514 AGAGAGGAATACCGGCGGAATCTCCTGGATTAGGCGGTGGTGAGGTTGCGAACGAGAATC 573
Query 563 ATAGGCTTTGGGTTGCTCTAGCTCGAGACGAGATCGAAGAAGATTTGTTCAGCATGAGTG 622
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 574 GCAGGCTTTGGGTTGCTCTTTCTCGAGACGAGATCGAAGAAGATTTGTTTAGCATGAGTG 633
Query 623 GGAACAGGTCATCTCGCCGGCCAAGGAAGAGGGCAAAAGCTATGCAGAAACATCTCGATG 682
|||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||
Sbjct 634 GGAACAGGCCATCTCGCCGGCCAAGAAAGAGGGCAAAAGCTTTGCAGAAATATCTCGATG 693
Query 683 TCATTTTCCCTGGATTGGGTCTCGTTGGGATGAATGCTGATTGCTTCAGAGTAGCCACTT 742
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 694 TCATTTTCCCTGGATTGTGTCTCGTTGGGATGAATGCTGATTGCTTCAGAGTATCCACTT 753
Query 743 CTCCGGCTAAGTGATGATCGATGCAAAGGAGTCTTTTGGTGAAGGAAAAAGATAGGTATG 802
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 754 CTCCGGCTAAGTGATGATCGATGCAAAGGAGTCTTTTGGTGAAGGAAAAAGATAGGTATG 813
Query 803 CTGGTGATCGAGAATCCAGATACATCACAGTAGAAGCTAGGAAGAAGATATCTCAAGAGA 862
||||||||| |||||||||||||| ||||||||||| ||||||| |||||| ||||||||
Sbjct 814 CTGGTGATCAAGAATCCAGATACACCACAGTAGAAGATAGGAAGGAGATATATCAAGAGA 873
Query 863 CATGTTCTTGTCTCATATCAAACTTAGTAGTAACTAAACTATAAGTAAATATCGGTAAGG 922
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 874 CATGTTCTTGTCTCATATCAAACTTAGTAGTAACTAAATTATAAGTAAATATCGGTAAGT 933
Query 923 TCATATAATTATAGATATATATAAAGAGA-GAGAGCGAGAGGGGTTTGTTTTTGAGTTA 980
||||||||||||||||||||| || || | |||||| ||||||||||||||||||||||
Sbjct 934 TCATATAATTATAGATATATA-AA-GAAAAGAGAGCCAGAGGGGTTTGTTTTTGAGTTA 990
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39495342012
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5