BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17460.1
Length=1211
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946484 jgi|Araly1|946484|scaffold_702713.1 1362 0.0
Ahg494245 jgi|Araly1|494245|fgenesh2_kg.8__61__AT5G47370.1 363 2e-99
> Ahg946484 jgi|Araly1|946484|scaffold_702713.1
Length=893
Score = 1362 bits (737), Expect = 0.0
Identities = 843/893 (94%), Gaps = 11/893 (1%)
Strand=Plus/Plus
Query 184 ACCAAGAGACAATATCATGATGATGGGTAAAGAGGATTTGGGTTTAAGTCTTAGCTTGGG 243
||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 5 ACCAAGAGAGTATATCATGATGATGGGAAAAGAGGATCTGGGTTTAAGTCTTAGCTTGGG 64
Query 244 ATTTGCAC-AAA--ACCATCCTCTCCAGCTAAATCTTAAACCCACTTCTTCACCAATGTC 300
|||||||| ||| |||||||||| ||||||||||| ||||||||||||||| |||||||
Sbjct 65 ATTTGCACAAAACCACCATCCTCTTCAGCTAAATCTAAAACCCACTTCTTCATCAATGTC 124
Query 301 CAATCTCCAGATGTTTCCATGGAACCAAACCCTTGTTTCTTCCTCAGATCAACAAAAGCA 360
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 125 CAATCTCCAGATGTTTCCATGGAACCAAACTTTTGTTTCTTCCTCAGATCATCAAAAGCA 184
Query 361 ACAGTTTCTTAGGAAAATCGACGTGAACAGCTTGCCAACAACGGTGGATTTGGAAGAGGA 420
||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 185 ACAGTCTCTTAGGAAAATCGACGTGAACAGCTTGCCAACGACGGTGGATTTGGAGGAGGA 244
Query 421 GACAGGAGTTTCGTCTCCAAACAGTACGATCTCGAGCACAGTGAGTGGAAAGAGGAGGAG 480
|||||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 245 GACAGGAGTTTCATCTCCAAACAGTACGATCTCGAGCACCGTGAGCGGCAAGAGGAGGAG 304
Query 481 TACTGAAAGAGAAGGTACCTCCGGTGGTGGTTG-CGGAGATGACCTTGACATCACTCTAG 539
||| |||||||| |||||||||||||| || |||||||||||| |||||||||||||
Sbjct 305 ---TGAGAGAGAAGGAACCTCCGGTGGTGG-TGCCGGAGATGACCTCGACATCACTCTAG 360
Query 540 ATAGATCTTCCTCACGTGGAACCTCCGATGAAGAGGAAGATTACGGAGGTGAGACTTGTA 599
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 ATAGATCTTCCTCACGTGGAACCTCCGATGAAGAAGAAGATTACGGAGGTGAGACTTGTC 420
Query 600 GGAAGAAGCTTAGACTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAAAGAGC 659
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GGAAGAAGCTTAGGCTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAAAGAGC 480
Query 660 ACAATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCTAGGTTTAACAGCAA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ACAATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCTAGGTTTAACAGCAA 540
Query 720 GACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAGACCGAAG 779
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 541 GACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAATTGAAGCAAACCGAAG 600
Query 780 TGGATTGCGAGTATTTGAAAAGATGTGTTGAGAAATTAACGGAAGAGAATCGGCGGCTCG 839
||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||
Sbjct 601 TGGATTGCGAGTATTTGAAGAGATGTGTAGAGAAATTAACTGAAGAGAATCGGCGGCTCG 660
Query 840 AGAAAGAGGCAGCGGAACTAAGAGCATTAAAGCTTTCACCGCGGTTGTATGGTCAGATGA 899
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AGAAAGAGGCGGCGGAATTAAGAGCATTAAAGCTTTCACCGCGGTTGTATGGTCAGATGA 720
Query 900 GTCCACCGACCACACTTTTGATGTGTCCATCGTGTGAACGTGTGGCCGGACCATCCTCAT 959
||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 721 GTCCACCAACCACTCTTTTGATGTGTCCATCGTGCGAACGAGTGGCCGGACCATCCTCAT 780
Query 960 CTAACCACAACCAGCGATCTGTCTCATTGAGTCCATGGCTCCAAATGGCCCATGGG---T 1016
||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 781 CTAACCACAACCAACGATCTGTCTCTTTGAGTCCATGGCTCCAAATGGCCCATGGGCCGT 840
Query 1017 CAACCTTTGATGTGATGCGTCCTAGGTCTTAACTTTAATGCTGCTTCTATGGG 1069
||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 841 CAACCTTTGATGTGATGCGTCCTAGGTCTTAACTTTAATGCCGGTTCTATGGG 893
> Ahg494245 jgi|Araly1|494245|fgenesh2_kg.8__61__AT5G47370.1
Length=1267
Score = 363 bits (196), Expect = 2e-99
Identities = 606/796 (76%), Gaps = 60/796 (8%)
Strand=Plus/Plus
Query 193 CAATATCATGATGATGGGTAAAGAGGATTTGGGTTTAAGTCTT-AGCTT-GGGATTTGCA 250
||| |||||||||||||| ||||| ||| ||||||| || ||| ||||| ||| ||| ||
Sbjct 241 CAA-ATCATGATGATGGGAAAAGAAGATCTGGGTTTGAG-CTTAAGCTTAGGG-TTTTCA 297
Query 251 CAAAAC--C-ATCCTCTCCAGCTAAATCTTAAACC-CACTTCTTCACCAAT-GTCCAATC 305
|||||| | ||||||| ||||| ||||| || || || |||||| || |||||
Sbjct 298 CAAAACAGCAATCCTCTTCAGCTGAATCTGAATCCTAAC-TCTTCA-TTATCAAACAATC 355
Query 306 TCCAGATG-TTTCCATGGAACCAAACCCTTGTTTCTTCCTCAGATCAACAAAAGCAACAG 364
|||||| | | ||||||||||||| | | | | |||| | || | || |
Sbjct 356 TCCAGA-GATACCCATGGAACCAAA--CAT-TCGC-TCCT---A-CATC---AG----A- 398
Query 365 TTTCTTAGGAAAATCGACGTGAACAGCTTGCCAACAACGGTGGATTTG-GAAGAGGAGAC 423
|||| | ||||| |||||||| || || ||| |||| | | || || || || ||
Sbjct 399 --TCTTCGCAAAATAGACGTGAATAGTTTTCCATCAAC-GACTAACTGCGAGGAAGAAAC 455
Query 424 AGGAGTTTCGTCTCCAAACAGTACGATCTCGAGCA-CAGTGAGTGGAAAGAGGAG-GAGT 481
|||||||||||||||||||||||||||||| |||| || | ||||| |||||||| |||
Sbjct 456 AGGAGTTTCGTCTCCAAACAGTACGATCTCAAGCACCA-TAAGTGGGAAGAGGAGTGAG- 513
Query 482 ACTGA-AAGAGAAGGTAC--CTCCGGTGGTGGTTGC-G-GA-GATGACCTTGACATCACT 535
| || ||| ||| | | | |||| | ||| | | | || ||| || || ||||||
Sbjct 514 A--GAGAAG-GAATCTCCGGCACCGGCGTTGGCTCCGGCGACGATCACGACGAGATCACT 570
Query 536 CTAGATAGATCTTCCTCACGTGGAACCTCCGATGAAGAGGAAGATTACGGAGGTGAGAC- 594
| ||| || | ||||||||||||||||| ||||| |||| |||| || || ||
Sbjct 571 CCGGATCGAGGGTATTCACGTGGAACCTCCGACGAAGAAGAAG---ACGGCGGCGAAACG 627
Query 595 TTGTAGGAAGAAGCTTAGACTATCCAAAGATCAATCCGCAGTTCTCGAAGACACTTTCAA 654
| | ||||||||||| | |||| |||||||| || || |||||||||| || |||||
Sbjct 628 TCG-AGGAAGAAGCTCCGGTTATCGAAAGATCAGTCTGCTTTTCTCGAAGAGACATTCAA 686
Query 655 AGAGCACAATACTCTCAATCCCAAACAGAAGCTGGCTTTGGCTAAGAAGCTAG-GTTTAA 713
||| ||||| ||||||||||||||||| ||||| ||| ||||||||||||| | || |
Sbjct 687 AGAACACAACACTCTCAATCCCAAACAAAAGCTAGCTCTGGCTAAGAAGCT-GAACTTGA 745
Query 714 CAGCAAGACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTAAAGCAGA 773
| ||| |||||||||||||||||||||||||||||||||| || || ||||||||||| |
Sbjct 746 CGGCACGACAAGTGGAAGTGTGGTTCCAAAACAGAAGAGCTAGAACCAAGTTAAAGCAAA 805
Query 774 CCGAAGTGGATTGCGAGTATTTGAAAAGATGTGTTGAGAAATTAACGGAAGAGAATCGGC 833
| || || ||||||||||| |||||| | || || ||||| |||||||||||||||||
Sbjct 806 CGGAGGTAGATTGCGAGTACTTGAAACGGTGCGTAGAGAAGCTAACGGAAGAGAATCGGA 865
Query 834 GGCT-CGAGAAAGAGGC-AGCGGAACTAAGAGCAT-TAAAGCTTTCACCGCGGTTGTATG 890
| || | |||||||||| | ||| || || | | | ||||| || || | || || |
Sbjct 866 GACTTC-AGAAAGAGGCTAT-GGAGCTTCGAAC-TCTCAAGCTGTCTCCACAATTCTACG 922
Query 891 GTCAGATGAGTCCACCGACCACACTTTTGATGTGTCCATCGTGTGAACGTGTGGCCGGAC 950
| ||||||| |||||| || ||||| | |||||||| ||||| || |||||||| || |
Sbjct 923 GCCAGATGACTCCACCCACTACACTCATCATGTGTCCTTCGTGCGAGCGTGTGGCTGGCC 982
Query 951 CATCCTCATCTAACCA 966
|||| ||||| |||||
Sbjct 983 CATCATCATCGAACCA 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45213779562
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5