BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17470.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1 1293 0.0
Ahg493130 jgi|Araly1|493130|fgenesh2_kg.7__2563__AT4G17480.1 619 1e-176
> Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1
Length=1030
Score = 1293 bits (700), Expect = 0.0
Identities = 938/1045 (90%), Gaps = 47/1045 (4%)
Strand=Plus/Plus
Query 88 CTCCATGGAGAAGAGTTTCCAAAGGTCTGCTCTCCTTGTGACTTTG--TCTC-TCTTCTT 144
|||||||||||||||||||||| | ||||||||||||||||||||| |||| |||||||
Sbjct 1 CTCCATGGAGAAGAGTTTCCAACGATCTGCTCTCCTTGTGACTTTGTCTCTCTTCTTCTT 60
Query 145 CTTCTCCATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCACGGGTTTGGAGGTGA 204
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 61 CTTCTCCATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCATGGGTTTGGTGGTGA 120
Query 205 ATGCTCCAATGACAAAGTGAGCAACTTAACACAGTTCCTCATCAACCACTCCGGCTACCC 264
|||||| ||| | ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 121 ATGCTCAAATAATAAAGTTAGCAACTTAACACAGTTCCTTATCAACCACTCCGGCTACCC 180
Query 265 TGGAACTTGCGTAGAAATAGGAGATGGAGTGAAAGATTCCTTATTCATGCCGCTTAGGCA 324
|||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||
Sbjct 181 TGGAACTTGCGTAGAAATAGGAAATGGAGTGCAAGATTCCTTGTTCATGCCGCTTAGGCA 240
Query 325 ACAAGCCAGCATAGCTTGTGAGAAAATTAAACAGATGCCA-GAGCTGAGTGAAGGTTACA 383
|||||| || ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 241 ACAAGCGAGTATAGCTTGTGAGAAAATTAAACAGATG-AAGGAGCTGAGTGAAGGTTACA 299
Query 384 ACATAGTGGCAGAGTCTCAAGGAAACTTGGTCGCTAGAGGCCTAATCGAGTTTTGCGATA 443
|||| || |||||||||||||||||||| ||||||||||| ||||||||||||||||| |
Sbjct 300 ACATTGTTGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGACA 359
Query 444 ATGCTCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTGCAA 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 ATGCTCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTGCAA 419
Query 504 TCCCCGAGGGGTGTGAT-TCAGCATTTTGCATACTCATGAAGGC-GTTTTTTGCAGTGAT 561
||||| |||||||| | || ||||||| || ||| ||||||| || ||| ||||||||
Sbjct 420 TCCCCAAGGGGTGT-ACCTCTCCATTTTGTATGCTCCTGAAGGCAGTGTTT-GCAGTGAT 477
Query 562 TTACAGCGATTTTGCTCAAGATCATACTGCTCCAAGTGGTTATGTCAAAAAACCTATGGA 621
|||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 478 CTACACCGACCTCGCTCAAGACCATACTGCTCCAAGTGGTTATGTCAAAAAACCTATGGA 537
Query 622 AATAAAAAATTATTTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGACCTGG 681
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AATAGCAAATTATCTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGACCTGG 597
Query 682 CGAGAAAAACTCCACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCATCAT 741
| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 --A------C-C-ACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCATCAT 647
Query 742 GTTCCAGAA-TGATACAATATTGGTTCCAAGAGAAACTTCTTGGTTCGGATATTACCCGG 800
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 GTTC-AGAAATGATACAATATTGGTTCCAAGAGAAACTTCTTGGTTCGGATATTACCCGG 706
Query 801 ATGGAGCTTCATCTTCAACACCTGTTTTGCCTCCTCAAAAGA-CAA--AG-C-----T-A 850
|||||||||||||||||||||||||||||||||| ||||| ||| || | | |
Sbjct 707 GTGGAGCTTCATCTTCAACACCTGTTTTGCCTCCTTAAAAGGTCAACCAGGCAGAAATCA 766
Query 851 T--ACA---CT-------GAGGATTGGATTGGTCTGAAAACCTTGGATGATGCTGGAAAA 898
| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 767 TCTACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACCTTGGATGATGCTGGAAAA 826
Query 899 GTGAGGTTTATTAGTGTCCCTGGCGGACACATCGAAATAACGGAAGAAGACCTTGTCAAA 958
|||| |||||||||||||||| ||||||||||||| ||| | |||||||||||||| |||
Sbjct 827 GTGAAGTTTATTAGTGTCCCTTGCGGACACATCGAGATAGCTGAAGAAGACCTTGTTAAA 886
Query 959 TACGTTGTGCCTTACCTCCAGAATGAGTCTTTGTTCTCTTCTGAACACGA-GACAATATA 1017
||||||||||||||||||||||| |||||| |||| ||||||||||||| | |||| ||
Sbjct 887 TACGTTGTGCCTTACCTCCAGAACGAGTCTACGTTCACTTCTGAACACGAAG-CAATGTA 945
Query 1018 GACATTACAATCTTTAACCCATT-AATAAATT-GGCCTCGTCCGAATCTAAGGGCCTATA 1075
|||||| ||||| | |||||||| |||||| |||||| |||||| ||||| ||||||
Sbjct 946 GACATTGCAATCGTGAACCCATTTAATAAAAAAGGCCTCATCCGAAAATAAGGTCCTATA 1005
Query 1076 TCATCAATGTAACATCATCATCTAT 1100
|||||||||||||||||||||||||
Sbjct 1006 TCATCAATGTAACATCATCATCTAT 1030
> Ahg493130 jgi|Araly1|493130|fgenesh2_kg.7__2563__AT4G17480.1
Length=1123
Score = 619 bits (335), Expect = 1e-176
Identities = 723/905 (80%), Gaps = 47/905 (5%)
Strand=Plus/Plus
Query 90 CCATGGAGAAGAGTTTCCAAAGGTCTGCTCTCCTTGTGACTTTGTCTCTCTTCTTCTTCT 149
|||||||||||||||||| ||| ||| ||||||||||||| ||| || |||||||| | |
Sbjct 108 CCATGGAGAAGAGTTTCCTAAGATCTACTCTCCTTGTGACATTGACTATCTTCTTC-T-T 165
Query 150 CCATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCACGGGTTTGGAGGTGAATGCT 209
|| |||| |||||| |||| ||||||||| |||| ||||| ||| || ||| | ||||||
Sbjct 166 CC-TTCCAGTTTCAATCTCGGTTCCATTCATTCTCTTTCATGGGATTAGAGATCAATGCT 224
Query 210 CCAATGACAAAGTGAGCAA-CTTAACACAGTTCCTCATCAACCACTCCGGCTACCCTGGA 268
| |||| |||||| || ||| |||| |||| | ||||| ||| ||| |||||||
Sbjct 225 CAAATGGTGGAGTGAG-AAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCCTGGA 283
Query 269 ACTTGCGTAGAAATAGGAGATGGAGTGAAAGATTC-CTTATTCATGCCGCTTAGGCAACA 327
||||| |||||||||||||||||| | ||||||| | | | |||||||||| ||||||
Sbjct 284 TCTTGCTTAGAAATAGGAGATGGAGAGCAAGATTCGGTGACT-ATGCCGCTTACGCAACA 342
Query 328 AGCCAGCATAGCTTGTGAGAAAATTAAACAGATGCCAGAGCTGAGTGAAGGTTACAACAT 387
||| || |||| ||||||||| ||||| ||||| |||| ||||| |||| ||||||||
Sbjct 343 AGCGAGTGTAGCGTGTGAGAAAGTTAAAAAGATGAAAGAGTTGAGTCAAGGCTACAACAT 402
Query 388 AGTGGCAGAGTCTCAAGGAAACTTGGTCGCTAGAGGCCTAATCGAGTTTTGCGATAATGC 447
|| ||| ||||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 403 TGTCGCACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGCGACAATGC 462
Query 448 TCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTGCA-ATCC 506
||| || ||| |||||||| | || |||| ||| ||||| |||||| | | | | || |
Sbjct 463 TCCTCCGGTCTTCAACTATATATCTTTAGAAGGTCCTCACGCTGGCATATCCG-ACATTC 521
Query 507 CCGAGGGGTGTGATTC-AGCATTTTGCATA-CT-CATGAAGGCGTTTTTTGCAGTGATTT 563
|| | |||| |||| | || ||||| | | | |||| | | || | | |
Sbjct 522 CC-A--AGTGTAATTCTA-CACTTTGC-GAGTTGC-TGAAAAC------AG-AG-G-TCT 566
Query 564 ACAGCGATTTTGCT-CAAGATCATACTGCTCCAAGTGGTTATGTCAAAAAACCTATGGAA 622
||| ||| || | | || ||||||| |||||||||||||||| |||| | |||| ||
Sbjct 567 ACACCGACTTCG-TACAGGATCATATTGCTCCAAGTGGTTATATCAAGATCCCTACCGAT 625
Query 623 ATAAAAAATTATTTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGACCTGGC 682
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 626 ATAAAAAATTACCTGGAACACTCCAAGTATCTGCCACAGCTCAACAACGAGAGACCT--A 683
Query 683 GAGAAA--AACTCCACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCATCA 740
||||| ||| |||||||||||||||| ||||| |||||||| |||||||| || |||
Sbjct 684 AAGAAAGGAACGCCACTTTTAAAGACCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCA 743
Query 741 TGTTCCAGAATGATACAATATTGGTTCC-AAGAGAAACTTCTTGGTTCGGATATTACCCG 799
|||| || ||||||| || || |||| || ||||| ||||||||||||||||||||||
Sbjct 744 TGTTTGAGGGTGATACAGTAGTGATTCCTAA-AGAAAGTTCTTGGTTCGGATATTACCCG 802
Query 800 GATGGAGCTTCATCTTCAACACCTGTTTTGCCTCCTCAAAAGACAAAGCTATACACTGAG 859
||||||||||| | | ||||| ||||| |||||||| |||||||||| || ||||||
Sbjct 803 GATGGAGCTTC--C---A-CACCTCTTTTGTCTCCTCAACAGACAAAGCTCTATACTGAG 856
Query 860 GATTGGATTGGTCTGAAAACCTTGGATGA-TGCTGGAAAAGTGAGGTTTATTAGTGTCCC 918
|||||||||||||||||||||||| || | ||| |||||||| | |||| | |||||||
Sbjct 857 GATTGGATTGGTCTGAAAACCTTGAAT-ACTGCCGGAAAAGTTAAGTTTGTCAGTGTCCA 915
Query 919 TGGCG-GACACATC-GAAATAACGGAAGAAGACCTTGTCAAATACGTTGTGCCTTACCTC 976
||||| | ||| | ||| || || |||| || |||| |||||||| | ||||||||||
Sbjct 916 TGGCGAG-CACCTAAGAA-TAGCGCAAGACGATGTTGTAAAATACGTCGCGCCTTACCTC 973
Query 977 CAGAA 981
||||
Sbjct 974 AAGAA 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5