BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17480.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493130 jgi|Araly1|493130|fgenesh2_kg.7__2563__AT4G17480.1 1716 0.0
Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1 568 5e-161
> Ahg493130 jgi|Araly1|493130|fgenesh2_kg.7__2563__AT4G17480.1
Length=1123
Score = 1716 bits (929), Expect = 0.0
Identities = 1070/1136 (94%), Gaps = 17/1136 (1%)
Strand=Plus/Plus
Query 1 ATCAAACGTAAACTTATTGCTTTCTTCCTTCTGGTAGTTCCCCAAAACTCAAAGTACTCT 60
|||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 1 ATCAAACGTAAACTTATTGCTTTCTTGCTTCTTGTGGTTCCCCAAAACTCAAAATACTCT 60
Query 61 TTTTCTGTGTAAACaaaaaaaaaaTCAACGGTACTCTTTCTCTTCTAAGTTGTTGTTCCA 120
|||| ||||||||| |||||| |||||||||| || ||||| ||| || | | |||
Sbjct 61 TTTTGTGTGTAAAC-----AAAAATAAACGGTACTC-TT-TCTTCCAAG-TG-T-TACCA 110
Query 121 TGGAGAAGAGTTTCCAGAA-ATC-AGCTCTCCTTGTGACCTTGACTCTCTTCTTCTTCAT 178
||||||||||||||| || ||| | ||||||||||||| |||||| ||||||||||| |
Sbjct 111 TGGAGAAGAGTTTCC-TAAGATCTA-CTCTCCTTGTGACATTGACTATCTTCTTCTTCCT 168
Query 179 TCCAGTTTCAATCTCGGTTCCATTCATTCTGTTTCATGGGATTAGAGATCAATGCTCCAA 238
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 169 TCCAGTTTCAATCTCGGTTCCATTCATTCTCTTTCATGGGATTAGAGATCAATGCTCAAA 228
Query 239 TGGTGGAGTGAGCAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCATGGATCTTG 298
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 229 TGGTGGAGTGAGAAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCTCCCCTGGATCTTG 288
Query 299 CTTAGAAATAGGAAATGGAGAGCAAGATTCGGTGACTATGCCGCTTACGCAACAAGCGAG 358
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 289 CTTAGAAATAGGAGATGGAGAGCAAGATTCGGTGACTATGCCGCTTACGCAACAAGCGAG 348
Query 359 TGTAGCGTGTGAGAAAGTTAAACAGATGAAGGATTTGAGTCAAGGCTACAACATTGTTGC 418
|||||||||||||||||||||| ||||||| || ||||||||||||||||||||||| ||
Sbjct 349 TGTAGCGTGTGAGAAAGTTAAAAAGATGAAAGAGTTGAGTCAAGGCTACAACATTGTCGC 408
Query 419 ACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGTGACAATGCTCCTCC 478
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 409 ACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGCGACAATGCTCCTCC 468
Query 479 GGTCTTCAACTATATATCTTTAGGAGGTCCTCATGCTGGCATATCCGACATTCCCAAGTG 538
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 469 GGTCTTCAACTATATATCTTTAGAAGGTCCTCACGCTGGCATATCCGACATTCCCAAGTG 528
Query 539 TAATTCTACACTTTGCGAGTTGCTGAAAACAGCGGTCTACACCGACTTCGTACAAGATCA 598
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 529 TAATTCTACACTTTGCGAGTTGCTGAAAACAGAGGTCTACACCGACTTCGTACAGGATCA 588
Query 599 TATTGCTCCAAGTGGTTATATCAAGATTCCTACAGATATAAAAGATTACCTGGAACACTC 658
||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 589 TATTGCTCCAAGTGGTTATATCAAGATCCCTACCGATATAAAAAATTACCTGGAACACTC 648
Query 659 CAAGTATCTGCCAAAGATCAACAACGAGAGACCTAACGAAAGGAACACCACTTTTAAAGA 718
||||||||||||| || ||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 649 CAAGTATCTGCCACAGCTCAACAACGAGAGACCTAAAGAAAGGAACGCCACTTTTAAAGA 708
Query 719 CCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCATGTTTGAGGGTGATGCAGTAGTGAT 778
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 709 CCGGTTCACTAGCTTGCACAACTTGGTCCTTGTCATGTTTGAGGGTGATACAGTAGTGAT 768
Query 779 TCCTAAAGAAAGTTCTTGGTTCGGATATTACCCGGATGGAGCTTCCACACCTCTTTTGTC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TCCTAAAGAAAGTTCTTGGTTCGGATATTACCCGGATGGAGCTTCCACACCTCTTTTGTC 828
Query 839 TCCTCAACAGACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACATTGGATGCTGC 898
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 829 TCCTCAACAGACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACCTTGAATACTGC 888
Query 899 CAGAAAAGTTAAGTTTGTCAGTGTCCCTGGCGAGCACCTAAGAATAGCGCAAGACGACGT 958
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 889 CGGAAAAGTTAAGTTTGTCAGTGTCCATGGCGAGCACCTAAGAATAGCGCAAGACGATGT 948
Query 959 TGTAAAACACGTCGTGCCTTACCTCAAGAACCAGCCTGCGTCTATGAGTGAAGATTTGGA 1018
||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 949 TGTAAAATACGTCGCGCCTTACCTCAAGAACCAGCCTGTGTCTATGAGTGAAGATTTGGA 1008
Query 1019 GATACTGCATCTATGATTGA--GACTTCATTGTTATGCTCTCTTAGAATCAAATTTAAAA 1076
|||||||||||||||| ||| |||||||||||||||||||||||| || ||||| ||||
Sbjct 1009 GATACTGCATCTATGAGTGAAAGACTTCATTGTTATGCTCTCTTAGGATTAAATT-AAAA 1067
Query 1077 GTGAAGAACTTTAGAGGCTCCTTTTTCTTAATCATAAATCCAAATAATTTCATCAT 1132
||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||
Sbjct 1068 GTGAAGAACTTTAGAGGCTACTTCTTCTTAATCATAAATCAAAATAATTTCATCAT 1123
> Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1
Length=1030
Score = 568 bits (307), Expect = 5e-161
Identities = 743/941 (79%), Gaps = 80/941 (9%)
Strand=Plus/Plus
Query 117 TCCATGGAGAAGAGTTTCCAGA-AATCAGCTCTCCTTGTGACCTTG--ACTC-TCTTCTT 172
|||||||||||||||||||| | ||| |||||||||||||| ||| ||| |||||||
Sbjct 2 TCCATGGAGAAGAGTTTCCA-ACGATCTGCTCTCCTTGTGACTTTGTCTCTCTTCTTCTT 60
Query 173 C-T-T-CATTCCAGTTTCAATCTCGGTTCCATTCATTCTGTTTCATGGGATTAGAGATCA 229
| | | |||||| |||||| |||| ||||||||| |||||||||||||| || | | | |
Sbjct 61 CTTCTCCATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCATGGGTTTGGTGGTGA 120
Query 230 ATGCTCCAATGGTGGAGTGAGCAGCTTCGTACAGCTCCTTAGCAACCTCTCTAGCT-CCC 288
|||||| ||| | ||| |||| ||| |||| |||||| ||||| ||| ||| |||
Sbjct 121 ATGCTCAAATAATAAAGTTAGCAACTTAACACAGTTCCTTATCAACCACTCCGGCTACCC 180
Query 289 ATGGATCTTGCTTAGAAATAGGAAATGGAGAGCAAGATTCGGTGACT-ATGCCGCTTACG 347
|||| ||||| |||||||||||||||||| ||||||||| || | |||||||||| |
Sbjct 181 -TGGAACTTGCGTAGAAATAGGAAATGGAGTGCAAGATTCCTTG-TTCATGCCGCTTAGG 238
Query 348 CAACAAGCGAGTGTAGCGTGTGAGAAAGTTAAACAGATGAAGGATTTGAGTCAAGGCTAC 407
|||||||||||| |||| ||||||||| |||||||||||||||| ||||| |||| |||
Sbjct 239 CAACAAGCGAGTATAGCTTGTGAGAAAATTAAACAGATGAAGGAGCTGAGTGAAGGTTAC 298
Query 408 AACATTGTTGCACAGTCTCAAGGAAACTTGGTAGCTAGAGGTCTAATCGAGTTTTGTGAC 467
|||||||||||| |||||||||||||||| || |||||||| |||||||||||||| |||
Sbjct 299 AACATTGTTGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGAC 358
Query 468 AATGCTCCTCCGGTCTTCAACTATATATCTTTAGGAGGTCCTCATGCTGGCATATCCGAC 527
|||||||| || ||| |||||||| | || |||||||| |||||||||||| | | | |
Sbjct 359 AATGCTCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTG-C 417
Query 528 -ATTCCCAA---GTGTAATTCTACACTTTGCGA-GTTGCTGAAAACA------GC-G-G- 573
|| ||||| ||||| ||| || |||| | | | ||||| || || | |
Sbjct 418 AATCCCCAAGGGGTGTACCTCTCCATTTTG-TATGCTCCTGAAGGCAGTGTTTGCAGTGA 476
Query 574 TCTACACCGACTTCG-TACAAGATCATATTGCTCCAAGTGGTTATATCAAGATTCCTACA 632
||||||||||| ||| | ||||| |||| |||||||||||||||| |||| | ||||
Sbjct 477 TCTACACCGACCTCGCT-CAAGACCATACTGCTCCAAGTGGTTATGTCAAAAAACCTATG 535
Query 633 GATATA-AAAGATTACCTGGAACACTCCAAGTATCTGCCAAAGATCAACAACGAGAGACC 691
|| ||| || |||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 536 GAAATAGCAA-ATTATCTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGACC 594
Query 692 TAACGAAAGGAACACCACTTTTAAAGACCGGTTCACTAGCTTGCACAACTTGGTCCTTGT 751
| || ||||||||||||||||| ||||| |||||||| |||||||| || |
Sbjct 595 T-------GG---ACCACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCAT 644
Query 752 CATGTTTGAG-GGTGATGCAGTAGTGATTCCTAA-AGAAAGTTCTTGGTTCGGATATTAC 809
|||| || || |||| || || || |||| || ||||| |||||||||||||||||||
Sbjct 645 CATG-TTCAGAAATGATACAATATTGGTTCC-AAGAGAAACTTCTTGGTTCGGATATTAC 702
Query 810 CCGGATGGAGC-T--TC--C-ACACCTCTTTTGTCTCC--------TC-A--A--CAG-- 848
|||| |||||| | || | |||||| ||||| |||| || | | |||
Sbjct 703 CCGGGTGGAGCTTCATCTTCAACACCTGTTTTGCCTCCTTAAAAGGTCAACCAGGCAGAA 762
Query 849 -------ACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACATTGGATGCTGCCAG 901
|||||||||||||||||||||||||||||||||||||| ||||||| ||| |
Sbjct 763 ATCATCTACAAAGCTCTATACTGAGGATTGGATTGGTCTGAAAACCTTGGATGATGCTGG 822
Query 902 AAAAGTTAAGTTTGTCAGTGTCCCTGGCG-AGCACCTA-AGAATAGC-GCAAGACGACGT 958
|||||| |||||| | ||||||||| ||| | ||| | ||| |||| | |||| ||| |
Sbjct 823 AAAAGTGAAGTTTATTAGTGTCCCTTGCGGA-CACATCGAGA-TAGCTG-AAGAAGACCT 879
Query 959 TGTAAAACACGTCGTGCCTTACCTCAAGAACCAGCCTGCGT 999
||| ||| |||| |||||||||||| ||||| || || |||
Sbjct 880 TGTTAAATACGTTGTGCCTTACCTCCAGAACGAGTCTACGT 920
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5