BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17483.1
Length=934
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493129 jgi|Araly1|493129|fgenesh2_kg.7__2562__AT4G17483.1 1404 0.0
Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1 311 6e-84
> Ahg493129 jgi|Araly1|493129|fgenesh2_kg.7__2562__AT4G17483.1
Length=907
Score = 1404 bits (760), Expect = 0.0
Identities = 859/908 (95%), Gaps = 2/908 (0%)
Strand=Plus/Plus
Query 1 ATGGAGAAGTATTCCCGGCGGTCTATTCTCCTTTCCACGGTGGTCGCCGCCGTGTTATTC 60
|||||||||| || |||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 1 ATGGAGAAGTGTTTCCGGCGGTCTGTTCTCCTTTCCACGGTGATCGCCGCCATGTTATTC 60
Query 61 TCTTTAATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTTTTATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAA 120
Query 121 TGTTCTGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCTCTCCTGGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTTCTGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCTCTCCTGGC 180
Query 181 TAT-TGCTTAGAAATAGGAAATGGAGAAAAGGACTCATGGTTCATGCCACTAAGAAAGCA 239
| | ||||||||||||||||| ||||||||||||||||||||||||||| | | ||||||
Sbjct 181 T-TCTGCTTAGAAATAGGAAACGGAGAAAAGGACTCATGGTTCATGCCATTGATAAAGCA 239
Query 240 AACAAGTGTAGCGTGTGAGAAAGTGAAAGCGATGAAAGTGTTAAGTCAAGGTTACAACAT 299
||| ||| |||||||||||||||||||| ||||||||| ||| |||||||||||||||||
Sbjct 240 AACTAGTTTAGCGTGTGAGAAAGTGAAAACGATGAAAGAGTTGAGTCAAGGTTACAACAT 299
Query 300 TGTTGCAGAGTCTCAAGGAAACTTAGTTGCTAGAGGACTAATCGAGTTCTGCGATAATGC 359
||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 300 TGTCGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGATAATGC 359
Query 360 TCCTCCTGTTATAAACTATATCTCTTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCCC 419
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 TCCTCCTGTCATTAACTATATCTCCTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCCC 419
Query 420 TAAGTGTAATTCTGGCCCAATATGTGCGATAGGTGAAGCTTTGTTGAAGTTAGAGGTCTA 479
|||||| |||||| |||||||||| || ||||||||| |||||||||||||||||||
Sbjct 420 CAAGTGTGCTTCTGGTCCAATATGTGATATTGGTGAAGCTATGTTGAAGTTAGAGGTCTA 479
Query 480 TACTGACTTCGTTCAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGGTGAAAT 539
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TACTGACTTCGTACAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGGTGAAAT 539
Query 540 TTCAAAGTATTTGGAGCACTCCAAGTATCTACCAAAGCTTAACAATGAGAGACCTGACGA 599
|||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 540 CTCAAAGTATTTGGAACACTCAAAGTATCTACCAAAGGTTAACAATGAGAGACCTGACGA 599
Query 600 AAGAAACTCTACTTTCAAAGACCGATTCACTAACTTACACAATTTAGTTCTTGTCATGTT 659
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 600 AAGAAACTCCACTTTCAAAGACCGATTCACTAAGTTACACAACTTAGTTCTTGTCATGTT 659
Query 660 CGAGAGCGATACAATGTTAATCCCTAAAGAAACTGCATGGTTTGGTTATTATGAAGATGA 719
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 660 CGAGAGCGATACAACATTAATCCCTAAAGAAACTGCATGGTTTGGATATTATGAAGATGA 719
Query 720 AGGATTCGATACCCTTTTGTCAGCTCAACAGACAAAGTTGTACAGAGAAGATTGGATTGG 779
|||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGATTTGATACTCTTTTGTCAACTCAACAGACAAAGTTGTACAGAGAAGATTGGATTGG 779
Query 780 TCTGAAAGCATTGGATGCTGCCGGAAAAGTGAAGTTTGAAAGTGTGTTAGGGGACCACCT 839
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 780 TCTGAAAGCATTGGATGTTGCCGGAAAAGTGAAGTTTGAAAGTGTGTTAGGGGACCATCT 839
Query 840 CAGTATATCGGATGAGGAGGTTGTGGAATTTGTTGTGCCTTACTTAATGCAAAACTGTAT 899
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 840 CAGTATATCGGATGAGGAGGTTGTGGAATATGTTGTGCCTTACTTAATGCAAAGCTGTAT 899
Query 900 GTGAATTT 907
||||||||
Sbjct 900 GTGAATTT 907
> Ahg493131 jgi|Araly1|493131|fgenesh2_kg.7__2564__AT4G17470.1
Length=1030
Score = 311 bits (168), Expect = 6e-84
Identities = 503/660 (76%), Gaps = 42/660 (6%)
Strand=Plus/Plus
Query 67 ATTCCGGTTTCAATCTCTATTCCCTTCATACTCTTTCACGGAATTGGAGATAAATGTTC- 125
|||||||||||| ||||| |||| ||| | || ||||| || |||| | | |||| ||
Sbjct 68 ATTCCGGTTTCACTCTCTGTTCCATTCGTTCTGTTTCATGGGTTTGGTGGTGAATGCTCA 127
Query 126 --TGGTGGAGTTAGTAACTTCACGCAACTCCTAACCAACCTCTCTGGCT-CTCCTGGCTA 182
| | |||||| ||||| || || |||| | ||||| ||| |||| | ||||| |
Sbjct 128 AATAATAAAGTTAGCAACTTAACACAGTTCCTTATCAACCACTCCGGCTAC-CCTGG-AA 185
Query 183 -TTGCTTAGAAATAGGAAATGGAG-AAAAGGACTCATGGTTCATGCCAC-TAAGAAAGCA 239
|||| |||||||||||||||||| || || || | ||||||||| | || | || ||
Sbjct 186 CTTGCGTAGAAATAGGAAATGGAGTGCAA-GATTCCTTGTTCATGCCGCTTAGGCAA-CA 243
Query 240 AACAAGTGTAGCGTGTGAGAAAGTGAAAGC-GATGAAAGTGTTAAGTCAAGGTTACAACA 298
| | ||| |||| ||||||||| | ||| | |||||| | | | ||| ||||||||||||
Sbjct 244 AGCGAGTATAGCTTGTGAGAAAATTAAA-CAGATGAAGGAGCTGAGTGAAGGTTACAACA 302
Query 299 TTGTTGCAGAGTCTCAAGGAAACTTAGTTGCTAGAGGACTAATCGAGTTCTGCGATAATG 358
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||
Sbjct 303 TTGTTGCAGAGTCTCAAGGAAACTTAGTCGCTAGAGGACTAATCGAGTTTTGCGACAATG 362
Query 359 CTCCTCCTGTTATAAACTATATCTCTTTAGGAGGTCCTCATGCTGGCATTGCCAAAATCC 418
|||| || || || |||||| |||| |||||||| |||||||||||| | || |||||
Sbjct 363 CTCCACCAGTCATCAACTATGTCTCCTTAGGAGGACCTCATGCTGGCGTCGCTGCAATCC 422
Query 419 CTAAG---TGTAATTCTGGCCCAATATGTGCGATAGGTGAAG-CTTTGTT-GAAGTTAGA 473
| ||| |||| ||| || | | ||| | | ||||| | |||| | ||| ||
Sbjct 423 CCAAGGGGTGTACCTCT--CC-ATTTTGTATGCTCC-TGAAGGCAGTGTTTGCAGT--GA 476
Query 474 GGTCTATACTGACTTCGTTCAAGATCATATTGCTCCTAGTGGTTATATCAAGATTCCTGG 533
|||| || ||| ||| |||||| |||| |||||| ||||||||| |||| | |||
Sbjct 477 --TCTACACCGACCTCGCTCAAGACCATACTGCTCCAAGTGGTTATGTCAAAAAACCTA- 533
Query 534 TG-AAATTTCAAAGTATTTGGAGCACTCCAAGTATCTACCAAAGCTTAACAATGAGAGAC 592
|| |||| |||| ||| |||| |||||||||||||| |||||||| ||||| |||||||
Sbjct 534 TGGAAATAGCAAATTATCTGGAACACTCCAAGTATCTGCCAAAGCTAAACAACGAGAGAC 593
Query 593 CTGACGAAAGAAACTCTACTTTCAAAGACCGATTCACTAACTTACACAATTTAGTTCTTG 652
||| || | | ||||| |||||||| ||||| | ||| || || || |||||
Sbjct 594 CTG--GA------C-C-ACTTTTAAAGACCGTTTCACCAGCTTGCAAAACTTGGTTCTCA 643
Query 653 TCATGTTC-GAGAGCGATACAATGTTAATCCCTAA-AGAAACTGCATGGTTTGGTTATTA 710
|||||||| || | |||||||| || | || || ||||||| | ||||| || |||||
Sbjct 644 TCATGTTCAGAAAT-GATACAATATTGGTTCC-AAGAGAAACTTCTTGGTTCGGATATTA 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34653731553
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5