BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17486.1
Length=1084
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493128 jgi|Araly1|493128|fgenesh2_kg.7__2561__AT4G17486.1 1293 0.0
Ahg494250 jgi|Araly1|494250|fgenesh2_kg.8__66__AT5G47310.1 529 2e-149
> Ahg493128 jgi|Araly1|493128|fgenesh2_kg.7__2561__AT4G17486.1
Length=1019
Score = 1293 bits (700), Expect = 0.0
Identities = 768/801 (96%), Gaps = 3/801 (0%)
Strand=Plus/Plus
Query 26 CGATCATTTTTGCAGTCTCTC-TCCCAACCAATCCCATTCTGCTC-GACTCTCATTGTTG 83
|||||||||||||||| |||| | | |||||||||| |||| ||| | | | | |||||
Sbjct 1 CGATCATTTTTGCAGTGTCTCTTACAAACCAATCCC-TTCTTCTCAGTTTTTTAGTGTTG 59
Query 84 CAGAGGTTTAGGAAGAAAGGAATGGTTCGATCGTGACTTTGAATTGGGATATTGTGTGTA 143
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 60 CAGAGGTTTAGGAAGAAAGGAATGATTCGATCGTGACTTTGAATTGGGATTTTGTGTGTA 119
Query 144 AAATGTGGGTGCCTACATTGAGCTCAAGCTCATGTTCAAGTGATGAGAGGGATGAGAGCA 203
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 120 AAATGTGGGTGCCTACATTGAGCTCAAGCTCATCTTCAAGTGATGAGAGGGAAGAGAGCA 179
Query 204 GTGGAGAAGCCGCGCTTACGCCGGTTTATCTCAATGTCTATGATCTAACGCCTGTCAACA 263
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GTGGAGAAGCCGGGCTTACGCCGGTTTATCTCAATGTCTATGATCTAACGCCTGTCAACA 239
Query 264 ATTACCTTTATTGGTTTGGGATTGGCATTTTCCATTCTGGTATTGAGGCTCATAATTTGG 323
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 240 ATTACCTTTATTGGTTTGGGATTGGCATATTCCATTCTGGAATTGAGGCTCATAATTTGG 299
Query 324 AATATTGCTATGGAGCTCACGAGTATCCAACAAGTGGGGTATATGAGGTGGAACCTAGGA 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AATATTGCTATGGAGCTCACGAGTATCCAACAAGTGGGGTATATGAGGTGGAACCTAGGA 359
Query 384 ACTGTCCAGGGTTCATCTTTAGACGGTCGGTTTTACTGGGAACTACCAGCATGTCCCGTT 443
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 360 GCTGTCCAGGTTTCATCTTTAGACGGTCGGTTTTATTGGGAACTACCAGCATGTCTCGTT 419
Query 444 CAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAGTACCATGGTGACACTTACCATT 503
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 420 CAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAATACCATGGTGACACTTACCATT 479
Query 504 TGATTGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCAGCTAACAGGAAAGC 563
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 480 TGATTGCCAAGAACTGTAACCATTTTACTGAAGAAGTATGCTTGCAGCTTACAGGAAAGC 539
Query 564 CTATTCCAGGATGGATTAATCGGCTGGCCCGAGTAGGTTCCTTCTGTAATTGTCTTCTGC 623
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 540 CTATTCCAGGATGGATTAATCGGCTAGCCCGTGTAGGTTCGTTCTGTAATTGTCTTCTGC 599
Query 624 CAGAAAGCATTCAGCTTACAGCTGTTAGTGCTCTTCCCGAACGCCTTGAATTCTCCGATG 683
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 CAGAAAGCATTCAGCTTACAGCTGTTAGTGTTCTTCCCGAACGCCTTGAATTCTCCGATG 659
Query 684 AGGATGAATCAAACTCAGAGGCATCTTCTGTGTCAGATGAAGAAGGATCAGAGCAGCATC 743
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 660 AGGAGGAATCAAACTCAGAGGCATCTTCTGTGTCGGATGAAGAAGGATCAGAGCAGCATC 719
Query 744 TCATAAATGTAGCAGACAGAGAGATTGTGTATCTACAAAACAAACCAGTGCGACTTACCA 803
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCATAAATGCAGCAGACAGAGAGATTGTGTATCTACAAAACAAACCAGTGCGACTTACCA 779
Query 804 GAGAGGAGATCCCCTGAGAAA 824
|||||||||||||||||||||
Sbjct 780 GAGAGGAGATCCCCTGAGAAA 800
Score = 289 bits (156), Expect = 4e-77
Identities = 185/198 (93%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 887 AGTGTGGTGTGCCCATGGAAGCTGAAAGGGAGTAAGTTATATATCTCGTTTTGTCACCTT 946
||||| |||||||||||||||||||||||||||||| | ||||||| ||||||||||||
Sbjct 827 AGTGT-GTGTGCCCATGGAAGCTGAAAGGGAGTAAG-T-GATATCTCCTTTTGTCACCTT 883
Query 947 AGTGCTGCGTTGGTTCTGTCGGAAATTCGATTTGGTATTCTTCTCATCATTTTAGGAATG 1006
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 884 AATGCTGCGTTTCTTCTGTCGGAAATTCGATTTGGTATTCTTCTCATCATTTTAGGAATG 943
Query 1007 TAAAAACGGATTCCCGGATTCATTTTAATCAGAC-AACCCTTTGGCAGTAAAAATCTAAA 1065
|||||||||||||| ||||| ||||||||||||| |||| ||||||||||||||||| ||
Sbjct 944 TAAAAACGGATTCC-GGATTTATTTTAATCAGACCAACC-TTTGGCAGTAAAAATCTGAA 1001
Query 1066 GATTTCTCCATATTTTCC 1083
||||||||||||||||||
Sbjct 1002 GATTTCTCCATATTTTCC 1019
> Ahg494250 jgi|Araly1|494250|fgenesh2_kg.8__66__AT5G47310.1
Length=1066
Score = 529 bits (286), Expect = 2e-149
Identities = 560/688 (81%), Gaps = 36/688 (5%)
Strand=Plus/Plus
Query 139 GTGTAAAATGTGGGTGCCTACATTGAGCTCAAGCTCATGTTCAAGTGATGA-GAGG--GA 195
|||||||||| |||| | | ||||||||||||| ||||||| |||| || ||| ||
Sbjct 70 GTGTAAAATGCGGGTACTTGGTTTGAGCTCAAGCTTATGTTCAGGTGAGGACAAGGAAGA 129
Query 196 TG-AGAG-C-AGTGGAGAA-GCCGCGCTTACGCCGGTTTATCTCAATGTCTATGATCTAA 251
| |||| | | ||||||| || | || || || ||||||||||| ||||||||||| |
Sbjct 130 AGAAGAGACAACTGGAGAAGGCTG-TCTCACTCCTGTTTATCTCAACGTCTATGATCTGA 188
Query 252 CGCCTGTCAACAATTACCTTTATTGGTTTGGGATTGGCAT-TTTCCATTCTGGTATTGAG 310
| |||||||||||||| || |||||||| || ||||||| ||| || ||||| ||||||
Sbjct 189 CTCCTGTCAACAATTATCTCTATTGGTTCGGTCTTGGCATATTT-CACTCTGGCATTGAG 247
Query 311 GCTCATAATTTGGAATATTGCTATGGAGCTCACGAGTA-TCCAACAAGTGGGGTATATGA 369
|||||| ||| |||||| | ||||| ||||| ||||| || | | |||||||||| |||
Sbjct 248 GCTCATGGTTTCGAATATGGATATGGGGCTCATGAGTATTCGAGC-AGTGGGGTATTTGA 306
Query 370 GGTGGAACCTAGGAACTGTCCAGGGTTCATCTTTAGACGGTCGGTTTTACTGGGAACTAC 429
||| |||||||||| ||||||||| ||||||||||| || || ||||| ||||||| ||
Sbjct 307 GGTTGAACCTAGGAGCTGTCCAGGTTTCATCTTTAGGCGCTCAGTTTTGTTGGGAACCAC 366
Query 430 CAGCATGTCCCGTTCAGATTTCCGCTCATACATGGAGAAGCTTTCAAGAAAGTACCATGG 489
||||||||| || |||||||||||||| | ||||||||||||||| ||||| || |||||
Sbjct 367 CAGCATGTCTCGCTCAGATTTCCGCTCTTTCATGGAGAAGCTTTCGAGAAAATATCATGG 426
Query 490 TGACACTTACCATTTGATTGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCA 549
||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GGACACATACCATTTAATCGCCAAGAACTGTAACCATTTCACTGAAGAAGTATGCTTGCA 486
Query 550 GCTAACAGGAAAGCCTATTCCAGGATGGATTAATCGGCTGGCCCGAGTAGGTTCCTTCTG 609
| ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 487 GGTAACAGGAAAGCCTATTCCCGGATGGATTAATCGGATGGCCCGAGTAGGTTCTTTCTG 546
Query 610 TAATTGTCTTCTGCCAGAAAGCATTCAGCT-TACAGCTGTTAGTGCTCTTCCCGAACGCC 668
||| ||| | || ||||||||||| ||||| | || |||||| | | | |||||| |||
Sbjct 547 TAACTGTATCCTTCCAGAAAGCATACAGCTCT-CATCTGTTAAT-CA-T-CCCGAA-GCC 601
Query 669 TT-GAATTCTCCGATGAG---GATGAATCA-AAC--TCAGAGGCATCTTCTGTGTCAGAT 721
| || ||||| ||||| |||| |||| || |||| |||||||| || ||| ||
Sbjct 602 CTCGAGTTCTCTGATGATAACGATGGATCAGAAGAATCAGTTGCATCTTCCGTATCATAT 661
Query 722 GAA---GA---AG--G-ATCAGAGCAGCATCTCATAA-ATGTAGCAGACAGAGAGATTGT 771
||| || || | ||| || || |||||||||| | | | || |||| || ||||
Sbjct 662 GAAACAGATGGAGAAGGATCGGATCATCATCTCATAACA-GCACCAAACAGCGACATTGC 720
Query 772 GTATCTACAAAACAAACCAGTGCGACTT 799
|||||||||| ||| ||||||| |||||
Sbjct 721 GTATCTACAAGACAGACCAGTGAGACTT 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40372169103
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5