BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17490.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493127 jgi|Araly1|493127|fgenesh2_kg.7__2560__AT4G17490.1 1254 0.0
Ahg494253 jgi|Araly1|494253|fgenesh2_kg.8__69__AT5G47230.1 340 9e-93
Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1 115 6e-25
Ahg935434 jgi|Araly1|935434|scaffold_403422.1 99.0 6e-20
> Ahg493127 jgi|Araly1|493127|fgenesh2_kg.7__2560__AT4G17490.1
Length=940
Score = 1254 bits (679), Expect = 0.0
Identities = 866/948 (91%), Gaps = 46/948 (5%)
Strand=Plus/Plus
Query 47 ATGGCTACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTCCTCGACGAA 106
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGCAACACCAAACGAAGTATCAGCTCTTTTCCTCATCAAGAAGTATCTTCTCGACGAA 60
Query 107 TTGTCTCCGTTGCCTACTACTGCCACCACCAATCGATGGATGAACGATTTCACGTCATTT 166
|||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 TTGTCTCCGTTG-C--CTACTGCCACCACCAATCCATGGATGAACGATTTCACGTCATTT 117
Query 167 GATCAAACCGGTTTCGAGTTTTCTGAATTTGAAACCAAACCGGAAATAATCGATCTCGTC 226
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 118 GATCAAACCGGTTTCGAGTTTTCTGAATTTGAAATTAAACCGGAAATAATCGATCTCGTC 177
Query 227 ACTCCCAAACCGGAGA--T-T--TTT---G-----A--T-T--TCGA-T-----GTGAAA 262
|| ||||||||||||| | | ||| | | | | | || | |||||
Sbjct 178 ACACCCAAACCGGAGATTTCTGATTTCGAGCTCAAACCTATAATTGATTCACAAATGAAA 237
Query 263 TCTGAAATTCCATC-TGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTCCTCGCGT 321
|||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 238 TCTGAAATTCCA-CTTGAATCGAACGATTCCTTCACGTTCCAATCGAATCCTGCTCGCGT 296
Query 322 TACTGTTCAATCCAATCGAAAACCGCCGTTGAAGATCGCACCACCGAACCGAACCAAGTG 381
|| |||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 297 TATTGTTAAATCCAATCGGAAACCGCCGTTGAAGATCGCGCCACCGAACCGAACTAAGTG 356
Query 382 GATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGA 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GATTCAATTCGCAACCGGAAATCCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAGA 416
Query 442 GGAGAAGAGGCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGAT 501
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 AGAGAAGAGGCATTACAGAGGAGTGAGAATGAGGCCGTGGGGGAAATTCGCGGCGGAGAT 476
Query 502 TCGAGACCCGA-CTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTTTGAGACGGCGATCG 560
|||||| |||| | |||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 477 TCGAGATCCGAAC-CGTCGTGGAACTAGAGTTTGGCTCGGGACGTTTGAGACGGCGATCG 535
Query 561 AAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATCAAAGGCGATTCTGA 620
|||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||
Sbjct 536 AAGCGGCTAGAGCTTACGACAAAGCAGCGTTTAGACTCCGAGGATCAAAAGCGATTCTGA 595
Query 621 ATTTCCCGCTTGAAGTTGACAAGTGGAATCCACGCGCTGAAGATGGTCGTGGCCTGTACA 680
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 596 ATTTCCCGCTTGAAGTTGGCAAGTGGAATCCACGCGCTGAAGATGGTCATGGCCTGAACA 655
Query 681 ACAAACGGAAGAGAGACGGCGAGGAGGAGGAAGTGACGGTGGTTGA-GAAAGTGCTAAAG 739
|||||||||||||||||||||||| |||||||||||||||||| || ||| || | ||||
Sbjct 656 ACAAACGGAAGAGAGACGGCGAGGGGGAGGAAGTGACGGTGGT-GAAGAAGGTACCAAAG 714
Query 740 ACGGAGGAGAGTTACGACGTTAGCGGCGGCGAGAATGTTGAGTC----A-G---G-TTTG 790
|||||||||||||||| ||||||||||||||||||||||||||| | | | ||||
Sbjct 715 ACGGAGGAGAGTTACGCCGTTAGCGGCGGCGAGAATGTTGAGTCGGCGACGTCAGGTTTG 774
Query 791 ACGGCGATAGATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTATCGCCGTTA 850
|||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 775 ACGGCGTTTGATGACTGGGACATGACGGAGTTTCTGAGCATGCCGCTTTTATCGCCGTTA 834
Query 851 TCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTTTGAATTCTAT-TTTTCTG 909
||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||
Sbjct 835 TCTCCACACCCACCGTTTGGTCATCCACAATTGACCGTTGTTTGAATTTTATGTTTTCTG 894
Query 910 TTTGGGTCAGCTTGTTGTATGCTGACGTGGAATTATG-CTATATCTTT 956
|| |||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 895 TT-GGGTCAGCTTGTTGTATGCTGACGTGGAATTATGGC-ATATCTTT 940
> Ahg494253 jgi|Araly1|494253|fgenesh2_kg.8__69__AT5G47230.1
Length=1170
Score = 340 bits (184), Expect = 9e-93
Identities = 501/646 (78%), Gaps = 54/646 (8%)
Strand=Plus/Plus
Query 327 TTCAATC-C-AA-TCGAAAACCGCCGTTGAAGATCGCACCACCGAACCGAACCA-AGTGG 382
||||||| | || ||| |||||||| ||||| ||| | | || | | || || |||||
Sbjct 439 TTCAATCTCAAATTCGTAAACCGCCATTGAAAATCTCGCTTCC-AGCTAAAACAGAGTGG 497
Query 383 ATTCAATTCGCAACCGGAAA-T-CCTAAACCGGAACTTCCCGTACCGGTTGTAGCAGCAG 440
|| |||||||| ||| |||| | || ||||||||| || | ||||||| | ||| ||
Sbjct 498 ATCCAATTCGC-ACCTGAAATTACC-AAACCGGAAGTTACTAAACCGGTT-T--CAGAAG 552
Query 441 AGGAGAAGAGGCATTACAGAGGAGTGAGGA-TGAGGCCGTGGGGGAAATTCGCGGCGGAG 499
| ||||||| ||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 553 AAGAGAAGAAGCATTACAGAGGAGTGA-GACAAAGACCGTGGGGGAAATTCGCGGCGGAG 611
Query 500 ATTCGAGACCCGACTCGTCGTGGAACTCGTGTTTGGCTCGGGACGTTTGAGACGGCGATC 559
||||| ||||||| | || ||| | || |||||||| ||||||||||| || |||||
Sbjct 612 ATTCGTGACCCGAATAAACGCGGATCCCGCGTTTGGCTTGGGACGTTTGATACAGCGATT 671
Query 560 GAAGCGGCTAGAGCTTACGACAAAGAAGCGTTTAGACTACGAGGATC-AAAGGCGATTCT 618
|||||||| |||||||| || ||| ||||||||| || ||||| || |||| ||||| |
Sbjct 672 GAAGCGGCAAGAGCTTATGATGAAGCAGCGTTTAGGCTTCGAGGTTCGAAAG-CGATTTT 730
Query 619 GAATTTCCCGCTTGAAGTTGACAAGTGGAATCCACGCGCTGAAGATGGTCGTGGCCTGTA 678
||||||||| |||||||||| |||||||| |||||||| || || ||| | | |
Sbjct 731 GAATTTCCCTCTTGAAGTTGGGAAGTGGAAACCACGCGCCGACGAAGGT-GAG------A 783
Query 679 CAACAAACGGAAGAGAGACGGCGAGGAGGA-G-GAA-GTGACGGTGGTTGAGAAAGTGCT 735
| ||||||||||||||| ||| || || | ||| ||||| ||||||||||||||| |
Sbjct 784 -AG-AAACGGAAGAGAGACAACGATGAAGATGAGAAAGTGACAGTGGTTGAGAAAGTGTT 841
Query 736 AAAGACGGAGGAGAG--TTACGACGTTAGCGGCGGCGAGAA-T----GTT-G-A--GTC- 783
|||||||| |||| || ||||||| ||| || |||| | ||| | | |||
Sbjct 842 GAAGACGGAACAGAGCGTT--GACGTTAACGGTGGAGAGACGTTTCCGTTTGTAACGTCG 899
Query 784 AGGTTTGACGGCGATA-GATGACTGGGATTTGACGGAGTTTCTGAGCATGCCGCTTTTAT 842
| ||| |||| | || | ||||||||| || |||| |||||| | | | |||||| | |
Sbjct 900 AA-TTTAACGGAGTTATG-TGACTGGGACTTAACGGGGTTTCTTAACTTTCCGCTTCTGT 957
Query 843 CGCCGTTATCTCCACACCCACCGTTTGGTTATCCACAATTGACCGTTGTTTGAATTCTAT 902
||||||||||||| || ||| ||||||||||| | || ||||||||||||||| || | |
Sbjct 958 CGCCGTTATCTCCTCATCCATCGTTTGGTTATTCTCAGTTGACCGTTGTTTGATTTTT-T 1016
Query 903 TTTTCTG-TTTGGG-TCAGCTTGTTGTATGCTGACGTGGAATTATG 946
|||| || ||| || | | | || ||||||||||||||| |||||
Sbjct 1017 TTTT-TGGTTTTGGCT-A--T-GT-GTATGCTGACGTGGACTTATG 1056
> Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1
Length=830
Score = 115 bits (62), Expect = 6e-25
Identities = 123/152 (81%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 446 AAGAGGCATTACAGAGGAGTGAGGA-TGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCG 504
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct 303 AAGAAGCATTACAGAGGAGTGA-GACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCG 361
Query 505 AGACCCGACTC-GTCGTGGAACTCGTGTTTGGCTCGGGACGTTTGAGACGGCG-ATCGAA 562
|| ||| | | |||| || | |||||| | |||||||||||||||||| | ||
Sbjct 362 TGATCCGGCGAAGAA-TGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAA-GAT 419
Query 563 GCGGCTAGAGCTTACGACAAAGAAGCGTTTAG 594
|||||| ||||||||| | || ||| |||||
Sbjct 420 GCGGCTTTAGCTTACGATAGAGCAGCTTTTAG 451
> Ahg935434 jgi|Araly1|935434|scaffold_403422.1
Length=763
Score = 99.0 bits (53), Expect = 6e-20
Identities = 145/187 (78%), Gaps = 16/187 (9%)
Strand=Plus/Plus
Query 451 GCATTACAGAGGAGTGAGGATGAGGCCGTGGGGGAAATTCGCGGCGGAGATTCGAGACCC 510
||| |||||||||||||||| ||||||||||||||||||||||||||||||| | || ||
Sbjct 332 GCAGTACAGAGGAGTGAGGAGGAGGCCGTGGGGGAAATTCGCGGCGGAGATTAGGGATCC 391
Query 511 GACTC-GT-CGTGGAACTCGTGTTTGGCTCGGGACGTTT-GAGACGGCG-ATCGAAGCGG 566
|| | || | | || | |||||||||||||| || |||||| || | || ||||
Sbjct 392 GAAGAAGAACG-G-AGCTAGGGTTTGGCTCGGGAC-TTACGAGACGCCGGAA-GACGCGG 447
Query 567 CTAGAG-CTTACGACAAAGAAGCGTTT-AGACT-ACGAGGATC-AAAGGCGATTCTGAAT 622
| | | |||||||| || |||||| || || | ||||||| |||| | | ||||||
Sbjct 448 CG-GTGGCTTACGACCGAGCGGCGTTTCAG-CTTA-GAGGATCGAAAG-CTAAGCTGAAT 503
Query 623 TTCCCGC 629
|| ||||
Sbjct 504 TTTCCGC 510
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5