BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17500.1
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493126 jgi|Araly1|493126|fgenesh2_kg.7__2559__AT4G17500.1 1421 0.0
Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1 316 2e-85
Ahg474053 jgi|Araly1|474053|fgenesh2_kg.1__4007__AT1G49120.1 56.5 4e-07
> Ahg493126 jgi|Araly1|493126|fgenesh2_kg.7__2559__AT4G17500.1
Length=998
Score = 1421 bits (769), Expect = 0.0
Identities = 940/1019 (92%), Gaps = 25/1019 (2%)
Strand=Plus/Plus
Query 1 ATTCACACCGGACATTTTGAAATCTCAACAAGAACCAAACCAAACAACaaaaaaaCATTC 60
||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1 ATTCACACCAGACATTTTGAAATCTCAAGAAGAACCAAACCAAACAAAAAAAAAACATTC 60
Query 61 TTAATAATTATCTTTCTGTTATGTCGATGACGGCGGATTCTCAATCTGA-TTATGCTTTT 119
||||||| ||||| ||||||||||||||||||||||| |||||||| || || ||||||
Sbjct 61 TTAATAAATATCTCTCTGTTATGTCGATGACGGCGGAATCTCAATCCGACTT-CGCTTTT 119
Query 120 CTTGAGTCCATACGACGACACTTACTAGGAGAATCGGAGCCGATACTCAGTGAGTCGACA 179
|||||||||||| | |||||||||||||||||||||||| || |||||||||||||| |
Sbjct 120 CTTGAGTCCATAAGGCGACACTTACTAGGAGAATCGGAGGCGCGACTCAGTGAGTCGATA 179
Query 180 GCGAGTTCGGTTACTCAATCTTGTGTAACCGGTCAGAGCATTAAACCGGTGTACGGACGA 239
|||||||||| | ||||||||| ||| ||| | ||| ||||||||||||||||||||
Sbjct 180 ACGAGTTCGGTGGCGCAATCTTGTACAACAGGTAATAGCGTTAAACCGGTGTACGGACGA 239
Query 240 AACCCTAGCTTTAGCAAACTGTATCCTTGCTTCACCGAGAGCTGGGGAGATTTGCCGTTG 299
||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACCCTAGCTTCAGCAAGTTGTATCCTTGCTTCACCGAGAGCTGGGGAGATTTGCCGTTG 299
Query 300 AAAGAAAACGATTCTGAGGATATGTTAGTTTACGGTATCCTCAACGACGCCTTTCACGGC 359
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 AAAGAAAACGATTCTGAGGATATGTTAGTTTACGGTATCCTCAACGACGCTTTTCACGGC 359
Query 360 GGTTGGGAGCCGTCTTCTTCGTCTTCCGACGAAGATCGTAGCTCTTTCCCGAGT-GTTAA 418
|||||||| ||||||||||| ||||| |||||||||||||||| ||| ||| || |||||
Sbjct 360 GGTTGGGAACCGTCTTCTTCATCTTCTGACGAAGATCGTAGCTTTTTTCCG-GTGGTTAA 418
Query 419 GATCGAGACTCCGGAGAGTTTCGCGGCGGTGGATTCTGTTCCGGTCAAGAAGGAGAAGAC 478
||| |||||||| |||| ||||||||||||||||||||||||||| |||||||||| |||
Sbjct 419 GATTGAGACTCCTGAGATTTTCGCGGCGGTGGATTCTGTTCCGGTGAAGAAGGAGACGAC 478
Query 479 GAGTCCTGTTTCGGCGGCGGTGACGGCGGCGAAGGGAAAGCATTATAGAGGAGTGAGACA 538
|||||| | || | | | | |||| | |||||||||||||||||||||||||||||
Sbjct 479 GAGTCC-GGTT---C--C-G-G-CGGC--C-AAGGGAAAGCATTATAGAGGAGTGAGACA 526
Query 539 AAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGACCCGGCGAAGAACGGAGCTAGGGT 598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 527 AAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGATCCGGCGAAGAACGGAGCTAGGGT 586
Query 599 TTGGTTAGGAACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTT 658
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 TTGGTTAGGGACGTTTGAGACGGCGGAGGACGCGGCGTTGGCTTACGACAGAGCTGCTTT 646
Query 659 CAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCGTTGAGAGTTAATTCAGGAGAACC 706
Query 719 CGACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTTTCTTCTTCTAACGAGAACGGAGC 778
|||||||||||| |||||||||||||||||||||| |||||||||| ||| ||||||||
Sbjct 707 CGACCCGGTTCGGATCAAGTCCAAGAGATCTTCTTCTTCTTCTTCTTCCGAAAACGGAGC 766
Query 779 TCCGAAGAAGAGGAGAACGGTGGCCGCCGGTGGTGGAATGGATAAGGGATTGACGGTGAA 838
||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||
Sbjct 767 TCCGAAGAAGAGGAGAATGGTGGCCGCCGGTGGTGGGACGGATAAGGGATTGACGGTGAA 826
Query 839 GTGCGAGGTTGTTGAAGTGGCACGTGGCGATCGTTTATTGGTTTTATAATTTTGATTTTT 898
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 827 GTGCGAGGTTGTTGAAGTGACACGTGGCGATCATTTATTGGTTTTATAATTTTGATTTTT 886
Query 899 CTTTGTTGGATGATTATATGATTCTTCAAAAAAG-AAGAACGTTAATaaaaaaaTTCGTT 957
||||||||||| | || ||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 887 CTTTGTTGGAT--T-AT--GATTCTTCAAAAAAGGAAGAACGTTAATAAGAAA-TTCGTT 940
Query 958 TATTATTATATTTAACCTTCC-AATCATTCCATTTATTAGTGGAATCAAACTTTTTTCT 1015
|||||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||
Sbjct 941 TATTATTATATTTAAC-TTCCTAATCATTCCATTTAGTAGTGGGATCAAACTTTTTTCT 998
> Ahg494254 jgi|Araly1|494254|fgenesh2_kg.8__70__AT5G47220.1
Length=830
Score = 316 bits (171), Expect = 2e-85
Identities = 223/249 (90%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 516 AAGCATTATAGAGGAGTGAGACAAAGGCCGTGGGGGAAATTTGCGGCGGAGATTAGAGAC 575
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||| | ||
Sbjct 306 AAGCATTACAGAGGAGTGAGACAGAGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGAT 365
Query 576 CCGGCGAAGAACGGAGCTAGGGTTTGGTTAGGAACGTTTGAGACGGCGGAGGACGCGGCG 635
||||||||||| |||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 366 CCGGCGAAGAATGGAGCTAGGGTTTGGTTAGGGACGTTTGAGACGGCGGAAGATGCGGCT 425
Query 636 TTGGCTTACGACAGAGCTGCTTTCAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCG 695
|| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 426 TTAGCTTACGATAGAGCAGCTTTTAGGATGCGTGGTTCCCGCGCTTTGTTGAATTTTCCG 485
Query 696 TTGAGAGTTAATTCAGGAGAACCCGACCCGGTTCGAATCAAGTCCAAGAGATCTTCTTTT 755
||||| |||||||| || ||||| ||||||||||| |||| ||| ||||||||||||| |
Sbjct 486 TTGAGGGTTAATTCCGGTGAACCTGACCCGGTTCGGATCACGTCTAAGAGATCTTCTTCT 545
Query 756 TCTTCTTCT 764
|| || |||
Sbjct 546 TCGTCGTCT 554
> Ahg474053 jgi|Araly1|474053|fgenesh2_kg.1__4007__AT1G49120.1
Length=960
Score = 56.5 bits (30), Expect = 4e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 540 AGGCCGTGGGGGAAATTTGCGGCGGAGATTAGA 572
||||||||||||||||||||||||||||| |||
Sbjct 277 AGGCCGTGGGGGAAATTTGCGGCGGAGATAAGA 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37779810747
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5