BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17510.1
Length=970
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493125 jgi|Araly1|493125|fgenesh2_kg.7__2558__AT4G17510.1 1411 0.0
Ahg946475 jgi|Araly1|946475|scaffold_702704.1 893 0.0
> Ahg493125 jgi|Araly1|493125|fgenesh2_kg.7__2558__AT4G17510.1
Length=958
Score = 1411 bits (764), Expect = 0.0
Identities = 899/963 (93%), Gaps = 13/963 (1%)
Strand=Plus/Plus
Query 16 TCGGATGTTGAGGGATTCGTATCTTGGAGCCGAAGTGTTGTTTTCTTATAGAAGGAT--- 72
|||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||
Sbjct 1 TCGGATTTTGAGGGATTCGTATCTTGGAGCCGAA--G-TGTTTTCTTATAGAAAGATCAA 57
Query 73 --TTTGATTTCTTCTGCAAAATTCGATCGATAGTGACG-AGAAAGATCCTAAGATGGCGA 129
||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||
Sbjct 58 AGATTGATTTCTTCTGCAAAATTCGATCGAAAGTGACGAAGAAAGATCCGAAGATGGCGA 117
Query 130 CCGCAAGCGAGAGTTCTTCATCTAAGAGATGGCTTCCACTTGAATCTAACCCAGATGTTA 189
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 118 CCGCAAGCGAGAGTTCTTCAGCTAAGAGATGGCTTCCACTTGAATCTAACCCAGATGTGA 177
Query 190 TGAATCAGTATCTCTGGGGACTTGGTCTTGCCCCTGATGAAGCAGAGTGCAATGATGTGT 249
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 178 TGAATCAGTATCTTTGGGGACTTGGTCTTGCCCCTGATGCAGCAGAGTGCAATGATGTGT 237
Query 250 ATGGGTTAGACGATGAACTTCTAGAGATGGTTCCAAAGCCTGTTCTTGCTGTTCTCTTCC 309
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTGGGTTAGACGACGAACTTCTAGAGATGGTTCCAAAGCCTGTTCTTGCTGTTCTCTTCC 297
Query 310 TTTACCCAATCACCAAAAAGAGTGAAGAAGAGAGAATCGAGCAAGACAAGGAAATTAAGG 369
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 298 TTTACCCCATCACCACAAAGAGTGAAGAAGAGAGAATCGAGCAAGACAAGGAAATCAAGG 357
Query 370 AAAAGGTGCATAGCGATAAAGTTTACTTTATGAAACAAACTGTTGGTAATGCTTGTGGAA 429
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 AAAAGGTGCATAGTGATAAAGTTTACTTCATGAAACAAACTGTTGGTAATGCTTGTGGAA 417
Query 430 CCATTGGTCTTCTTCATGCTATTGGGAATATTACCTCTGAAATCAAACTCTCCGACGGAT 489
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 418 CCATTGGCCTTCTTCATGCTATTGGGAATATAACCTCTGAAATCAAACTCTCCGAGGGAT 477
Query 490 CGTTCTTGGATAGATTCTTCAAATCCACTGCCAACATGACTCCTATGGAGCGTGCCAAGT 549
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 478 CGTTCTTGGATAGATTCTTCAAATCCACTGCCAACATGACTCCCATGGAGCGTGCAAAGT 537
Query 550 TTCTCGAGAATGACAGTCAAATAGAAGATGCTCATTCTGTAGCTGTTAT-AGCTGGTGAT 608
||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||
Sbjct 538 ATCTTGAGAATGACAGTCAAATAGAAGATGCTCATTCTGTAGCTGTT-TCAGCGGGTGAT 596
Query 609 ACACCTGCTTCAGAAGACGCAGACACGCATTTCATTTGTTTAGCTTGTGTAGAAGGTGAG 668
||| |||||||||| || || | |||||||||||| ||||||||||||||||||||||||
Sbjct 597 ACAGCTGCTTCAGACGATGCGGTCACGCATTTCATCTGTTTAGCTTGTGTAGAAGGTGAG 656
Query 669 CTCTATGAACTTGATGGAAGAAAGGCAGGACCGATTTCACACGGTGCTTCCTCTCCAGCT 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CTCTATGAACTTGATGGAAGAAAGGCAGGACCGATTTCACACGGTGCTTCCTCTCCAGCT 716
Query 729 ACCCTCCTGAAGGACGCAACAAAAGTGATAAAGAAGATGATCGAGAAGAATCCGGGCTCT 788
|||||| ||||||||||||| | |||||||||||||||||| |||||||| |||| |||
Sbjct 717 ACCCTCTTGAAGGACGCAACGATAGTGATAAAGAAGATGATTGAGAAGAACCCGGATTCT 776
Query 789 CTCAACTTCAACCTGATAGCCATCTCTAAGAGAACCTGAGGGTCTT-TTAAATAACCGAA 847
|| |||||||| ||||||||||||||||||||||| ||||| |||| ||| | || ||||
Sbjct 777 CTGAACTTCAATCTGATAGCCATCTCTAAGAGAACGTGAGGCTCTTCTTAGA-AAGCGAA 835
Query 848 ACTCCTAAGTCTTGTTTTTGAGTTTGTGACTATTTTATATCTTCGGATTCTGTTTTTCAA 907
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
Sbjct 836 GCTCCTAAGTCTTGTTTCTGAGTTTGTGACTATTTTATATCTTCGGATTCTGCTTTTCTA 895
Query 908 TGTTCTGAACAAATTACAGTTGATGATCATGGTTTAGAGAATGCATTCCTAGATCAGTAA 967
|||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 896 TGTTCTGAACAAATCGCAGTTGATGATCATGGTTTAGAGAATGCATTTCTAGATGAGTAA 955
Query 968 CAC 970
|||
Sbjct 956 CAC 958
> Ahg946475 jgi|Araly1|946475|scaffold_702704.1
Length=748
Score = 893 bits (483), Expect = 0.0
Identities = 657/739 (89%), Gaps = 20/739 (3%)
Strand=Plus/Plus
Query 104 TGAC-GAGAAAGATCCTAAGATGGCGACCGCAAG-CG-AGAGTTCTTCATCTAAGAGATG 160
|||| |||||| ||| |||||| |||| | || || || ||| |||| |||||| |||
Sbjct 1 TGACAGAGAAAAATCAGAAGATGACGACAG-TAGACGAAG-GTTATTCAGCTAAGAAATG 58
Query 161 GCTTCCACTTGAATCTAACCCAGATGTTATGAATCAGTATCTCTGGGGACTTGGTCTTGC 220
||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 59 GCTTCCACTTGAAGCTAACCCAGATGTTATCAATCAGTATCTTTGGGGACTTGGTCTTTC 118
Query 221 CCCTGATGAAGCAGAGTGCAATGATGTGTATGGGTTAGACGATGAACTTCTAGAGATGGT 280
|||||||||| ||||||||||||||||| ||| ||||||||||||||||| ||||||||
Sbjct 119 TCCTGATGAAGTAGAGTGCAATGATGTGTTTGGCTTAGACGATGAACTTCTCGAGATGGT 178
Query 281 TCCAAAGCCTGTTCTTGCTGTTCTCTTCCTTTACCCAATCACCAAAAAGAGTGAAGAAGA 340
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 179 TCCAAAGCCTGTTCTTGCTGTTCTCTTTCTTTACCCAATCACCAAAAAGTGTGAAGAAGA 238
Query 341 GAGAATCGAGCAAGACAAGGAAATTAAGGAAAAGGT---GCATAGCGATAAAGTTTACTT 397
||||||| |||||||||| ||||| ||||||||||| || || || ||||| |||||
Sbjct 239 GAGAATCCAGCAAGACAAAGAAATCAAGGAAAAGGTAAATCAGAGTGACAAAGTCTACTT 298
Query 398 TATGAAACAAACTGTTGG-TAATGCTTGTGGAACCATTGGTCTTCTTCATGCTATTGGGA 456
||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 CATGAAACAAACTG-TGGATAATGCTTGTGGAACCATTGGGCTTCTTCATGCTATTGGGA 357
Query 457 ATATTACCTCTGAAATCAAACTCTCCGACGGATCGTTCTTGGATAGATTCTTCAAATCCA 516
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 358 ATATAACCTCTGAGATCAAACTCTCCGAGGGATCGTTCTTGGATAGATTCTTCAAATCCA 417
Query 517 CTGCCAACATGACTCCTATGGAGCGTGCCAA-GTTTCTCGAGAATGACAGTCAAATAGAA 575
||||||| |||||| |||| ||||||| ||| |||||| |||||||||||||||||||||
Sbjct 418 CTGCCAATATGACTTCTATAGAGCGTG-CAAGGTTTCTTGAGAATGACAGTCAAATAGAA 476
Query 576 GATGCTCATTCTGTAGCTGTTATAGCTGGTGATACACCTGCTTCAGAAGACGCAGACACG 635
|||||||||||||||||||||||||||||||||||| | |||||||| || | ||||||
Sbjct 477 GATGCTCATTCTGTAGCTGTTATAGCTGGTGATACAACGGCTTCAGACGAGGTGGACACG 536
Query 636 CATTTCATTTGTTTAGCTTGTGTAGAAGGTGAGCTCTATGAACTTGATGGAAGAAAGG-C 694
|||||||| ||||| ||||||||||| |||||||||||||||||||||||| || ||| |
Sbjct 537 CATTTCATCTGTTTGGCTTGTGTAGATGGTGAGCTCTATGAACTTGATGGA-GATAGGGC 595
Query 695 AGGACC-GATTTCACACGGTGCTTCCTCTCCAGCTACCCTCCTGA-AGGACGCAACAAAA 752
||| || | ||||||| |||||||||||||||||||| | | | |||||||| ||||
Sbjct 596 AGGGCCAG-TTTCACATGGTGCTTCCTCTCCAGCTACTTTGTT-ACAGGACGCAGTAAAA 653
Query 753 GTGATAAAGAAGATGATCGAGAAGAATCCGGGCTCTCTCAACTTCAACCTGATAGCCATC 812
|||||||||| ||| |||||||||||||| | |||||||||||||| |||||||||||
Sbjct 654 GTGATAAAGACGATAATCGAGAAGAATCCAGATTCTCTCAACTTCAATGTGATAGCCATC 713
Query 813 TCTAAGAGAA-CCTGAGGG 830
||||||| || ||||||||
Sbjct 714 TCTAAGA-AAGCCTGAGGG 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36026156565
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5