BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17520.1
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493124 jgi|Araly1|493124|fgenesh2_kg.7__2557__AT4G17520.1 1851 0.0
> Ahg493124 jgi|Araly1|493124|fgenesh2_kg.7__2557__AT4G17520.1
Length=1527
Score = 1851 bits (1002), Expect = 0.0
Identities = 1378/1543 (89%), Gaps = 92/1543 (6%)
Strand=Plus/Plus
Query 43 TTGGCTTCT-AACAAACGCTGTCTGAATCATA---T---TTC-GATTCTGATTTTTCTTC 94
||||| ||| ||| |||||||||||||||||| | ||| |||||||||||||||||
Sbjct 1 TTGGCGTCTAAAC-AACGCTGTCTGAATCATATCTTCGATTCTGATTCTGATTTTTCTTC 59
Query 95 ATGGATTCGTATAGCCAATAAGTTTTTTCAATATTCAAAACAAAAACCCCATCAAAATAA 154
|||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||
Sbjct 60 ATGGATTCGTATAGCCAATAAGGTTTTTCAATCTTCAAAACAAAAACCCAATCAAAATAA 119
Query 155 TCTCCG-GACCAGTTTCTCTTTCGATTCAGTCGGACCGGAAAAACAATGGCGTCTGTGAA 213
||| || ||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 120 TCT-CGTGACCAGTTTCTCTTTCGATTCAGTCGGACCGGAAAAA-AATGGCGTCTTTGAA 177
Query 214 CCCTTTCGATCTCTTGGACGATGACGCAGAGGATCCCAGCCAGATTGTTGCGT-CTAAGC 272
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 178 CCCTTTCGATCTCTTGGACGATGACGCAGAGGATCCCAGCCAGATTGTTGC-TGCTAAGC 236
Query 273 CATTGAAGGTTG-TGGCTCCGGTTCAGACTGCTAAGTCTGGTAAGATGCCGACTAAGCCG 331
|||||||||||| | | |||||||||| | || |||||||||||||||||||||||||||
Sbjct 237 CATTGAAGGTTGCT-GTTCCGGTTCAGCCGGCCAAGTCTGGTAAGATGCCGACTAAGCCG 295
Query 332 CCTCCTCCTTCTCAAGCTGTGAGGGAGGCAAGGAACGCTCCtggtggaggtcgtggtgct 391
||||||||| ||||||| ||||||||||| ||||||||||||| |||||||| ||||| |
Sbjct 296 CCTCCTCCTGCTCAAGCCGTGAGGGAGGCCAGGAACGCTCCTGTTGGAGGTCTTGGTGGT 355
Query 392 ggacgtggagggagttatggtcgtggtggacgtggtggaAACAATAGGGATTCAAGGAAC 451
|||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 356 GGACGTGGAGGGGGTTATGGTCGTGGTGGACGTGGTGGTTACAACAGGGATTCAAGGAAC 415
Query 452 AATGATGGTCCT---GCCAATGAAAACGGATATGGTGGAGGCTACAGACGCTCAGAAGAA 508
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 AATGATGCTCCTCCGGCCAATGAAAACGGATATGGTGGAGGCTACAGACGCTCAGAAGAA 475
Query 509 GGAGATGGAGCTAGACGTGGTGGGCCTGTTGGTGGATACC---GTGGTGATCGCCGTGGA 565
||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 476 GGAGATGGAGCGAGACGTGGTGGGCCTGTTGGTGGTTACCGTGGTGGTGATCGCCGTGGA 535
Query 566 AGCTACAGCAATGGTGGTGATTCAGGTGACTCTGAAAGACCACGCAAGAACTATGACCGT 625
|||||||||| ||||||||| ||||||| |||| ||||||||||||||||||| |||
Sbjct 536 GGCTACAGCAA---TGGTGATTCTGGTGACTTTGAACGACCACGCAAGAACTATGAGCGT 592
Query 626 CACAGTAGAACAGCGT-ACGGGAATGAGGATAAACGTGATGGAGCTGGCCGT-GCGAATT 683
|||||||||||||| | |||| ||||||| |||||||||||||||||||||| || || |
Sbjct 593 CACAGTAGAACAGC-TCACGGAAATGAGGTTAAACGTGATGGAGCTGGCCGTGGC-AACT 650
Query 684 GGGGAACCACTCAGGATGATATTACTCCGGTGACTGAAGAATCCACAGCTGTTGTGGACA 743
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 651 GGGGAACCACTCAGGATGATATTGCTCCAGTGACTGAAGAATCCACAGCTGTTGTGGACA 710
Query 744 AGAATTTGACTGTTGAGAAGCAAGATGGTGAAGGTGAAGCAACTGATGCAAAGAATGAAA 803
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || || |
Sbjct 711 AGAATTTGACTGTTGAGAAGCAAGGTGGTGAAGGTGAAGCAACTGATGCAAACAAAGAGA 770
Query 804 CACCTGCTG-A--GAAAGCAGAGGAAAAGCCTGAGGACAAGGAGATGACTTTGGAAGAGT 860
||||| ||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 CACCTACTGAAGTGCAAGCAGAGGAAAAGCCTGAGGACAAGGAGATGACTTTGGAAGAGT 830
Query 861 ATGAGAAGGTTTTGGAGGAGAAGAAGAAAGCTCTGCAGGCGACCAAGGTTGAGGAAAGGA 920
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 831 ATGAGAAGGTTTTGGAGGAGAAGAAGAAAGCTTTGCAGGCGACCAAGGTTGAGGAGAGGA 890
Query 921 AGGTTGACACTAAAGCATTTGAGGCCATGCAACAGCTCTCAAGCAAAAAGAGCAACAACG 980
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 891 AGGTTGACACTAAAGCATTTGAAGCCATGCAACAGCTCTCAAGCAAAAAGAGCAACAACG 950
Query 981 ATGAAGTCTTCATCAAACTGGGAACAGAGAAGGACAAGCGCATTACTGAGAGAGAAGAGA 1040
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 951 ATGAAGTCTTCATCAAACTGGGAACAGAGAAGGACAAGCGTGTTACTGAGAGAGAAGAGA 1010
Query 1041 AGACAAGGAAGTCATTGAGCATCAATGAGTTTCTGAAACCTGCGGATGGAAAGAGTTACT 1100
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1011 AGACAAGGAAGTCATTGAGCATCAATGAGTTTCTGAAACCTGCGGATGGAAAGA---ACT 1067
Query 1101 ACAGACCAAGAGGTGGTT---ACC-AAGG--TGGAAG-GGA--AGGACGTG--G-A--CC 1146
|||||||||||||||| | |||| |||| | ||| | || | | | | ||
Sbjct 1068 ACAGACCAAGAGGTGGAAGGGAAGGAAGGGATGGACGTGGACCAAGAGGAGAAGGAAACC 1127
Query 1147 A-A-G-A-G-A--AGGAAACCAGAGGGACGGTGGAAGAAACCTGAGGGAAGGAGGGAGAA 1199
| | | | | | ||||||||||| |||||| || ||||||| |||||||| |||||||
Sbjct 1128 AGAAGGACGGAGGAGGAAACCAGAAGGACGGAGGTAGAAACCCAAGGGAAGGCGGGAGAA 1187
Query 1200 ACCAGAGGGACGGAGGAGC---TGCA-G--CAC-AG-----GCACCAACACCGGCCATTG 1247
||||||||||||||||||| |||| | ||| || ||||| ||||||||||||
Sbjct 1188 ACCAGAGGGACGGAGGAGCAGCTGCACGGGCACCAGCACCTGCACCGGCACCGGCCATTG 1247
Query 1248 GGGACAGTGCACAGTTCCCTACTTTGGGTAAGTAAGGCAATCTCTCCGGTTTGGTCCTTC 1307
|||||| |||||||||||||||||||||||||||||||| |||| |||||| ||||||
Sbjct 1248 GGGACACTGCACAGTTCCCTACTTTGGGTAAGTAAGGCAGGATCTCGGGTTTGTTCCTTC 1307
Query 1308 AGCTTCTGTCTGGACTC-G---T-TT----CTCTGTAATATCTCACT--CGGTTTGGATT 1356
|||||||||||||| || | | || |||||||||||||| || |||||||||||
Sbjct 1308 AGCTTCTGTCTGGAGTCTGGACTCTTTTGTCTCTGTAATATCTCTCTGTCGGTTTGGATT 1367
Query 1357 TTGTTCTTCTGATTCTATTTTTATTGTTATACTCTTCCCTTTAGAGAGCTGAAGGTTTTT 1416
||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1368 TTGTTCTTCTG---CTATTTTTATTGTTATACTCTTCCCTTTAGAGAGCTGGAGTTTTTT 1424
Query 1417 TGTTTTGCGAACCCAATTTTGGGAGTTTTAA-GTTAAATGAGGCCAAAAAATCAACCATT 1475
|||||| |||||||||||||||||||||||| ||| |||||||| |||||||||||||||
Sbjct 1425 TGTTTTACGAACCCAATTTTGGGAGTTTTAAAGTTCAATGAGGCAAAAAAATCAACCATT 1484
Query 1476 CTCC-TTTT--GT-TGT--T-T--AGGTTTCAATTATATTTAG 1509
|||| |||| || ||| | | ||||||||||| |||||||
Sbjct 1485 CTCCATTTTTCGTCTGTAATATTTAGGTTTCAATTTTATTTAG 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58468526075
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5