BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17530.1
Length=965
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946473 jgi|Araly1|946473|scaffold_702702.1 1090 0.0
Ahg494258 jgi|Araly1|494258|fgenesh2_kg.8__74__AT5G47200.1 773 0.0
Ahg920394 jgi|Araly1|920394|scaffold_101675.1 379 2e-104
> Ahg946473 jgi|Araly1|946473|scaffold_702702.1
Length=650
Score = 1090 bits (590), Expect = 0.0
Identities = 631/651 (97%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 163 GATCCAGCTCCGAGATCAATCATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTC 222
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GATCCAGCTACGAGATCAATCATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTC 60
Query 223 ATTGGTGATTCTGGTGTTGGAAAGTCGTGCTTGCTTCTAAGGTTTGCTGATGATTCCTAC 282
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 ATTGGTGATTCTGGTGTTGGAAAGTCATGCTTGCTTCTAAGGTTTGCTGATGATTCCTAC 120
Query 283 CTGGATAGCTACATCAGCACCATTGGTGTCGACTTTAAAATCCGAACAGTCGAACAAGAT 342
||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 121 CTGGATAGCTATATCAGCACCATTGGTGTTGACTTTAAAATCCGCACAGTCGAACAAGAT 180
Query 343 GGAAAGACCATCAAACTCCAGATTTGGGATACGGCAGGCCAGGAACGTTTCAGAACGATT 402
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 181 GGAAAGACCATCAAACTCCAGATTTGGGATACCGCAGGCCAAGAGCGTTTCAGAACGATT 240
Query 403 ACTAGCAGTTACTACAGAGGAGCTCATGGAATTATTGTGACTTATGATGTAACAGATCTA 462
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 ACTAGCAGTTACTACAGAGGAGCTCATGGAATAATTGTGACTTATGATGTAACAGATCTA 300
Query 463 GAAAGCTTCAACAACGTCAAGCAATGGCTAAATGAAATCGACCGCTATGCAAGTGAGAAT 522
|||||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 301 GAAAGCTTCAACAACGTCAAGCAATGGCTAAATGAAATCGACCGTTACGCCAGTGAGAAT 360
Query 523 GTTAACAAGCTACTGGTTGGGAACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTAACAAGCTACTGGTTGGGAACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACT 420
Query 583 GAGACAGCTAAGGCTTTCGCTGATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAG 642
|||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 421 GAGACAGCCAAGGCTTTCGCAGATGAACTTGGAATCCCATTCTTGGAAACAAGTGCTAAG 480
Query 643 AATGCTACCAATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACCAGAATG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 AATGCTACCAATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACAAGAATG 540
Query 703 GCGAGCCAACCTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCGAGCCAACCTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTT 600
Query 763 AACCAGCAATCAGGCTGCTGCTCCTCTTAATTCG-CTTTGGTAACACTTAA 812
|||||||||||||| ||||||||||||| ||| | ||||||||||||||||
Sbjct 601 AACCAGCAATCAGGTTGCTGCTCCTCTTGATT-GTCTTTGGTAACACTTAA 650
> Ahg494258 jgi|Araly1|494258|fgenesh2_kg.8__74__AT5G47200.1
Length=887
Score = 773 bits (418), Expect = 0.0
Identities = 549/614 (89%), Gaps = 2/614 (0%)
Strand=Plus/Plus
Query 184 ATGAATCCTGAATATGACTATTTGTTCAAGCTTTTGCTCATTGGTGATTCTGGTGTTGGA 243
||||||||||||||||||||| ||||||||||| |||| || ||||||||||||||||||
Sbjct 102 ATGAATCCTGAATATGACTATCTGTTCAAGCTTCTGCTTATCGGTGATTCTGGTGTTGGA 161
Query 244 AAGTCGTGCTTGCTTCTAAGGTTTGCTGATGATTCCTACCTGGATAGCTACATCAGCACC 303
|| || ||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||
Sbjct 162 AAATCATGCCTGCTTCTAAGATTTGCTGATGATTCTTACCTGGATAGCTACATAAGCACC 221
Query 304 ATTGGTGTCGACTTTAAAATCCGAACAGTCGAACAAGATGGAAAGACCATCAAACTCCAG 363
|||||||| |||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 222 ATTGGTGTTGACTTTAAAATCCGCACAGTCGAACAGGACGGAAAGACCATCAAACTCCAG 281
Query 364 ATTTGGGATACGGCAGGCCAGGAACGTTTCAGAACGATTACTAGCAGTTACTACAGAGGA 423
|| ||||| || |||||||| ||||||||||| || || |||||||| ||||||||||||
Sbjct 282 ATCTGGGACACAGCAGGCCAAGAACGTTTCAGGACAATCACTAGCAGCTACTACAGAGGA 341
Query 424 GCTCATGGAATTATTGTGACTTATGATGTAACAGATCTAGAAAGCTTCAACAACGTCAAG 483
||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 342 GCTCATGGAATCATTGTCACTTATGATGTCACTGACCTAGAGAGCTTCAACAACGTCAAA 401
Query 484 CAATGGCTAAATGAAATCGACCGCTATGCAAGTGAGAATGTTAACAAGCTACTGGTTGGG 543
|||||||| |||||||||||||| || || || || ||||| |||||||||||||||||
Sbjct 402 CAATGGCTGAATGAAATCGACCGTTACGCTAGCGAAAATGTGAACAAGCTACTGGTTGGA 461
Query 544 AACAAGTGTGATCTCACATCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTCGCT 603
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 462 AACAAGAACGATCTCACTTCACAGAAAGTTGTATCCACTGAGACAGCTAAGGCTTTTGCA 521
Query 604 GATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCAATGTCGAAGAA 663
||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||||
Sbjct 522 GATGAACTTGGGATCCCATTCTTGGAAACAAGTGCCAAAAATGCAACCAATGTGGAAGAA 581
Query 664 GCTTTCATGGCCATGACTGCTGCAATCAAGACCAGAATGGCGAGCCAACCTGCAGGAGGA 723
||||||||||| |||||||||||||| ||||| |||||||| ||||| || || |||||
Sbjct 582 GCTTTCATGGCTATGACTGCTGCAATTAAGACAAGAATGGCTAGCCAGCCAGCTGGAGG- 640
Query 724 T-CTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAATCAGGCTGCTG 782
| | |||||||||||||||||||| || ||||| || || ||||||||||||||||| ||
Sbjct 641 TGCCAAGCCACCAACGGTCCAGATTCGTGGACAGCCAGTGAACCAGCAATCAGGCTGTTG 700
Query 783 CTCCTCTTAATTCG 796
||| |||| |||||
Sbjct 701 CTCTTCTTGATTCG 714
> Ahg920394 jgi|Araly1|920394|scaffold_101675.1
Length=317
Score = 379 bits (205), Expect = 2e-104
Identities = 215/220 (98%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 593 AGGCTTTCGCTGATGAACTTGGGATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCA 652
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 98 AGGCTTTCGCAGATGAACTTGGAATCCCATTCTTGGAAACAAGTGCTAAGAATGCTACCA 157
Query 653 ATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACCAGAATGGCGAGCCAAC 712
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 158 ATGTCGAAGAAGCTTTCATGGCCATGACTGCTGCAATCAAGACAAGAATGGCGAGCCAAC 217
Query 713 CTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAAT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 218 CTGCAGGAGGATCTAAGCCACCAACGGTCCAGATCCGAGGACAACCTGTTAACCAGCAAT 277
Query 773 CAGGCTGCTGCTCCTCTTAATTCGCTTTGGTAACACTTAA 812
|||| ||||||||||||| |||||||||||||||||||||
Sbjct 278 CAGGTTGCTGCTCCTCTTGATTCGCTTTGGTAACACTTAA 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35835541980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5