BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17540.1
Length=1096
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493122 jgi|Araly1|493122|fgenesh2_kg.7__2555__AT4G17540.1 1539 0.0
> Ahg493122 jgi|Araly1|493122|fgenesh2_kg.7__2555__AT4G17540.1
Length=1079
Score = 1539 bits (833), Expect = 0.0
Identities = 1005/1086 (93%), Gaps = 20/1086 (2%)
Strand=Plus/Plus
Query 19 TCTTGCTTTATCAACAGTTCGGT-A-----ACTACGACAAAGAAAAACAGGCGGGAAACC 72
||||||||| || |||||||||| | |||||| ||| | |||||||||||||||||
Sbjct 1 TCTTGCTTTCTCGACAGTTCGGTAACTTCTACTACGCCAATGGAAAACAGGCGGGAAACC 60
Query 73 AAATCAATGGAGGATTCTTAGCTTTTTCTCTG--TAACTCCCATTATCGTATCTTCAGCT 130
||||||||||||||||||||||||||||| | || |||||||||| ||||||||| |
Sbjct 61 AAATCAATGGAGGATTCTTAGCTTTTTCT-GGAAGAAGTCCCATTATCATATCTTCAGAT 119
Query 131 TAGTGAGATAGATG-GAGGAAATTGGCGG-CGGAAGCATCAGCAGCAATGGTGTGGTGAT 188
|||||||| || || | || | ||| || | || | |||||||||||||||||||
Sbjct 120 TAGTGAGAGAG-TGAAAAGAGA-TGGAGGAAAGCGGCGGCGGCAGCAATGGTGTGGTGAT 177
Query 189 GAAGAAGGAAGGATTAGGGTTTTCTAAAAGG-GGAATTAAAATAGAGAATCCTTTTGCTT 247
||||||||||||||||||||||||| || || ||||| |||||||||||||| |||||||
Sbjct 178 GAAGAAGGAAGGATTAGGGTTTTCT-AATGGAGGAATAAAAATAGAGAATCCATTTGCTT 236
Query 248 TTAAGGCTCTTCAAGTCTTCACTGGATTTGGCGTTGGTTGTGGAGTTGGTATTGGTAGTG 307
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 237 TTAAAGCTCTTCAAGTATTCACGGGATTTGGCGTTGGTTGTGGAGTTGGTATCGGCAGTG 296
Query 308 GTGCACCTTTGAATCTCGGTAGTATTCCAATGGTGGGGGAAATTATGAATTCAGCTAGAG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGCACCTTTGAATCTCGGTAGTATTCCAATGGTGGGGGAAATTATGAATTCAGCTAGAG 356
Query 368 GAGCAACCAATGTATTTTCGGGTGCCACACACCACGTGAATGGCGCTTTGCGGAAGCTTG 427
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 357 GAGCAACCAATGTATTTTCGGGTGCCACACACCACGTCAATGGCGCTTTGCGGAAGCTTG 416
Query 428 GAGCGAGGAACATTCAAGCAGGTGTTGGCTGTGGAGTTGGCTTTGGTCATGGTTTCGGAG 487
|||| | ||||||| |||||||||||||||||||||||||| | ||||||||||| ||||
Sbjct 417 GAGCTAAGAACATTAAAGCAGGTGTTGGCTGTGGAGTTGGCGTCGGTCATGGTTTTGGAG 476
Query 488 TTGGCATTGCAGTGAAACCAAGTGCCATACACAAACTTCAAGCTTCTATTATGGGAACTG 547
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTGGCATCGCAGTGAAACCAAGTGCCATACACAAACTTCAAGCTTCTATTATGGGAACTG 536
Query 548 CATCCAACTTGATGACTAAACTTGGAAGAACGAGTGAGACCACCTCAAGTCAAACTGAGA 607
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 537 CATCCAACTTGATGACTAAACTTGGAAGAACTAGTGAGACCACCTCAAGTCAAACCGAGA 596
Query 608 CT-GAAGACCAGGTGTCTCAATCTGTAACCGGTCACAAGAAACATGTGGACACAAAAGCA 666
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 -TAGAAGACCAGGTTTCTCAATCTGTAACCGGTCACAAGAAACATGTGGACACAAAAGCA 655
Query 667 TCTTTGAAGAACAGTGGTTCCTCTACTAATTCAAGAACGTTTGGTACTCGAACTGAGAAA 726
|||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 GCTTTCAAGAACAGTGGTTCCTCTACTGATTCAAGAACGTTTGGTACTCGAACTGAGAAA 715
Query 727 GTGATCAACAGTTTTCTCGACAACCCTATTCTGAAACACCAGGACACAACTGCGGAAGAA 786
|||||||||||||||||||| || || ||||||||||| |||||||||||||||| ||||
Sbjct 716 GTGATCAACAGTTTTCTCGAAAATCCGATTCTGAAACAACAGGACACAACTGCGGTAGAA 775
Query 787 CGACAGGTCACACAACTAGAATCGGAGAGCTTAATGCTTCAAATGGTGCTGAAACATCAG 846
| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 776 CAACAGGTCACACAACTGGAATCAGAGAGCTTAATGCTTCAAATGGTGCTGAAACATCAG 835
Query 847 AAACTCATTGATGAAGTAATGGAAGAGAACGAAAAGCTTCGAAGGATAATCATAGAAGAT 906
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 AAACTCATCGATGAAGTAATGGAAGAGAACGAAAAGCTTCGAAGGATAATCATAGAAGAT 895
Query 907 CTCAAAGTTTCACCCGAAAAACTGAAATTAGTTTCCTCTTACAATTACGAAACACCACCA 966
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 896 CTCAAAGTTTCACCCGAAAAACTCAAATTAGTTTCCTCTTACAAGTACGAAACACCACCA 955
Query 967 TGCAAAGATTGCTTTGAGTGTCGTAGAAAACAGAGAAGAAATAGAGGAAGAAAGCTGTAA 1026
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGCAAAGATTGCTTCGAGTGTCGTAGAAAACAGAGAAGAAATAGAGGAAGAAAGCTGTAA 1015
Query 1027 GCCAATTCCTTCATTTGTTATGAGAT-AAAGAAATTTTTCACAATATCAGACAAAACACA 1085
|||||||||||||||||||||||||| ||| ||| | ||||||||| ||||||||| |
Sbjct 1016 GCCAATTCCTTCATTTGTTATGAGATGAAAAAAAAAT--CACAATATCTGACAAAACATA 1073
Query 1086 GAATAC 1091
||||||
Sbjct 1074 GAATAC 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40829644107
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5