BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17550.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890460 jgi|Araly1|890460|Al_scaffold_0007_2446 883 0.0
Ahg493122 jgi|Araly1|493122|fgenesh2_kg.7__2555__AT4G17540.1 276 5e-73
Ahg937481 jgi|Araly1|937481|scaffold_501672.1 209 5e-53
> Ahg890460 jgi|Araly1|890460|Al_scaffold_0007_2446
Length=1008
Score = 883 bits (478), Expect = 0.0
Identities = 535/562 (95%), Gaps = 5/562 (1%)
Strand=Plus/Plus
Query 1075 ACTATTGGTGGAGAGTACGTGTCTGTGAAAACAGCAGGGAATCTCTCCACACTATTTGAT 1134
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 451 ACTATTGGTGGAGAGTACGTGTCTGTGAAAACAGCAGGAAATCTCTCCACGCTATTTGAT 510
Query 1135 GTTGGAGGCATTGTAGGAGGGATTCTTTGTGGTTACATTTCAGACAAATTCAAAGCAAGG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GTTGGAGGCATTGTAGGAGGGATTCTTTGTGGTTACATTTCAGACAAATTCAAAGCAAGG 570
Query 1195 GCTACAACTGCAGCTGCATTCATGTACGCTGCGATTCCGGCAATGCTTGTGTACCATTCC 1254
|||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 571 GCTACAACTGCAGCAGCATTCATGTACGCTGCAATTCCAGCAATGCTTGTGTACCATTCC 630
Query 1255 TATGGAGGTGTCTCTCAGACAGTCAACATCCTCCTCATGATGGTTGCTGGTTTGTTTGTC 1314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 631 TATGGAGGTGTCTCTCAGACAGTCAACATCCTCCTCATGATGGTTGCTGGTTTGTTTGTC 690
Query 1315 AATGGTCCTTATGCACTCATCACAACCGCAGTCTCTGCGGATCTGGGAACGCACAAGTCT 1374
||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 691 AATGGTCCTTATGCACTCATCACAACCGCAGTCTCAGCGGATCTTGGAACCCACAAGTCT 750
Query 1375 TTACAAGGCGATTCAAGGGCGCTTGCGACTGTTACTGCTATCATTGACGGGACTGGATCT 1434
|||||||||||||||||||||||||| ||||| ||||| || ||||| || |||||||||
Sbjct 751 TTACAAGGCGATTCAAGGGCGCTTGCAACTGTGACTGCAATTATTGATGGTACTGGATCT 810
Query 1435 GCCGGTGCGGCTTTAGGTCCGCTTTTGACAGGGTTTCTTTCTACTC-TGGGTTGGCAAGC 1493
|| |||||||||||||||||||||||||||||||||||||| || | |||| ||||||||
Sbjct 811 GCTGGTGCGGCTTTAGGTCCGCTTTTGACAGGGTTTCTTTCGAC-CATGGGCTGGCAAGC 869
Query 1494 TGTGTTCTATATGTTGGTCGTTGGAGCTCTCTGTGCTGGTTTGCTTTTGACCCGTCTGGT 1553
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 870 TGTGTTCTATATGTTAGTCGTTGGAGCTCTTTGTGCTGGTTTGCTTTTGACCCGTCTGGT 929
Query 1554 TATTGCTGAAATTAGAGAGAAACTTGGATATGTTGATGAAGAAGTTCCTGCTTCTGAACC 1613
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 930 TATTGCTGAAATTAGAGAGAAACTTGGATATGTTGATGAAG---TTCCTGCGTCTGAACC 986
Query 1614 ACTGTTAACCGATAGAAGATGA 1635
||||||||| || |||||||||
Sbjct 987 ACTGTTAACAGACAGAAGATGA 1008
Score = 719 bits (389), Expect = 0.0
Identities = 438/460 (95%), Gaps = 9/460 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATGAATTCGAAGAGGAAAACACCACCTGGGATTGCGCTTCTGAGGAGAGTCAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 1 ATGGCGATGAATTCGAAGAGGAAAACACCACCTGGGATTGCGCTTCTGAGAAGAGCCAGA 60
Query 61 GGAAGAAATTGGAGTCCAAAGACGTTTCGGTACGCGATTTTGTTTATTACTTTCATCGCA 120
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GGAAGAAATTGGAGTCCAAAGACGTTTCGGTACGCGATTTTGTTGATTACTTTCATCGCG 120
Query 121 TATGCTTGTTACCATGCTTCTCGTAAACCAAGCAGCATAGTGAAGAGCGTTTTACACCCA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGCTTGTTACCATGCTTCTCGTAAACCAAGCAGCATAGTGAAGAGCGTTTTACACCCA 180
Query 181 GACTCAAGCACTAAGCCACCTCAAGAACATAACAGCGACAAAATTTATCCTTGGCCTATG 240
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 181 GACTCAAGCACTAAGCCACCTCAAGAACACAACAGCAACAAAATTTATCCTTGGCCTATG 240
Query 241 GGTAACGTGTTTGTGAAGAGAGAAATTGGTGATATAGATGAGGTTTTGTTGCATCGTAAG 300
|| | |||||||||||||||||||||| || || | | ||||||||||||||||
Sbjct 241 GGCAGGGTGTTTGTGAAGAGAGAAATTG---AT---GA-G-G-TTTTGTTGCATCGTAAC 291
Query 301 TCTAAAGGATGGGAACCGTTTAATGGGAAAGATGGGACGTCTAGGTTGGGAGAGATTGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TCTAAAGGATGGGAACCGTTTAATGGGAAAGATGGGACGTCTAGGTTGGGAGAGATTGAT 351
Query 361 GTGGCGTTTCTTGCTTGTTACTCTATAGGAATGTATGTTGCTGGTCATTTGGGTGATAGT 420
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 352 GTAGCGTTTCTTGCTTGTTACTCTATAGGAATGTATGTTGCTGGACATTTGGGTGATAGT 411
Query 421 TTGGATCTGAGATTGTTTCTGACTTGGGGAATGATTGGGA 460
|||||||||||||||||||| |||||||||||||||||||
Sbjct 412 TTGGATCTGAGATTGTTTCTTACTTGGGGAATGATTGGGA 451
> Ahg493122 jgi|Araly1|493122|fgenesh2_kg.7__2555__AT4G17540.1
Length=1079
Score = 276 bits (149), Expect = 5e-73
Identities = 173/184 (94%), Gaps = 3/184 (2%)
Strand=Plus/Minus
Query 1743 GTATTCTGTGTTTTGTCTGATATTGTGAAAAATTTCTTT-ATCTCATAACAAATGAAGGA 1801
||||||| ||||||||| ||||||||| | ||| ||| ||||||||||||||||||||
Sbjct 1079 GTATTCTATGTTTTGTCAGATATTGTG--ATTTTTTTTTCATCTCATAACAAATGAAGGA 1022
Query 1802 ATTGGCTTACAGCTTTCTTCCTCTATTTCTTCTCTGTTTTCTACGACACTCAAAGCAATC 1861
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1021 ATTGGCTTACAGCTTTCTTCCTCTATTTCTTCTCTGTTTTCTACGACACTCGAAGCAATC 962
Query 1862 TTTGCATGGTGGTGTTTCGTAATTGTAAGAGGAAACTAATTTCAGTTTTTCGGGTGAAAC 1921
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 961 TTTGCATGGTGGTGTTTCGTACTTGTAAGAGGAAACTAATTTGAGTTTTTCGGGTGAAAC 902
Query 1922 TTTG 1925
||||
Sbjct 901 TTTG 898
> Ahg937481 jgi|Araly1|937481|scaffold_501672.1
Length=1613
Score = 209 bits (113), Expect = 5e-53
Identities = 311/403 (77%), Gaps = 28/403 (7%)
Strand=Plus/Plus
Query 352 GAGATTGATGTGGCGTTTCTTGCTTG-TTACTCTATAGGAATGTATGTTGCTGGTCATTT 410
||||| ||||| ||||||||||| | |||| || | ||||||||| ||||||| |||||
Sbjct 337 GAGATCGATGTTGCGTTTCTTGC-GGTTTACGCTTTCGGAATGTATTTTGCTGGACATTT 395
Query 411 GGGTGATAGTTTGGATCTGA-GATTGTTTC-TGACTTG-GGGAATGATTGGGAGTGGGTT 467
||| ||||| || |||| | || | ||| |||| | |||||||| || | ||| ||
Sbjct 396 GGGAGATAGGATGAATCTTAGGA-T-CTTCTTGAC-AGTTGGAATGATAGGAACTGGATT 452
Query 468 CTTT-GTTGGGT-TGTTTGGTA-TGGGTTATTTCTGG--AACATTCAT-GCGTTTTGGTT 521
||| || | ||||||| | | ||||| || || || |||||| || |||| |
Sbjct 453 GTTTACTT--CTCTGTTTGG-AGTTGGTTA-TT-GGGCTAATATTCATAGC-TTTT-ACT 505
Query 522 CTTT-TTGGTTATGCAAATGGCGGCTGGGTTGTTTCAGGCGACAGGATGGCCATCTGTTG 580
||| ||| ||||||||||| |||||| |||||||| | | || |||||||| ||||
Sbjct 506 ATTTCTTGATTATGCAAATGTTGGCTGGATTGTTTCAATCTTCGGGTTGGCCATCGGTTG 565
Query 581 TGGCTGTTGTTGGGAATTGGTTTGGGAA-AAGGAAGAGAGGTCTT-ATAATGGGGATTTG 638
| ||||| ||||| || |||||| || || |||||||||| || || ||||| || ||
Sbjct 566 TTGCTGTGGTTGGAAACTGGTTTAACAAGAA-GAAGAGAGGT-TTGATTATGGGAATATG 623
Query 639 GAATGCTCATACTTCTGTTGGGAACATTTGTGGTTCTTTAATTGCTGCTGGTGTTCTTGA 698
|||||||||||||||||||||||||||| ||| || || || ||||||| | | ||||
Sbjct 624 GAATGCTCATACTTCTGTTGGGAACATTACTGGCTCGTTGATCGCTGCTGCTATG-TTGA 682
Query 699 -ATATGGTTGGGGATGGTCTTTTATAGCTCCTGGTTTTGTCAT 740
|||||||||||||||||||||| | | ||||||| || ||||
Sbjct 683 GATATGGTTGGGGATGGTCTTTTGTTGTTCCTGGTGTTATCAT 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5