BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17565.1 Length=1137 Score E Sequences producing significant alignments: (Bits) Value Ahg890457 jgi|Araly1|890457|Al_scaffold_0007_2443 1225 0.0 Ahg354999 jgi|Araly1|354999|fgenesh1_pg.C_scaffold_7002172 484 4e-136 Ahg359014 jgi|Araly1|359014|fgenesh1_pg.C_scaffold_9000054 174 1e-42 > Ahg890457 jgi|Araly1|890457|Al_scaffold_0007_2443 Length=1074 Score = 1225 bits (663), Expect = 0.0 Identities = 955/1091 (88%), Gaps = 39/1091 (4%) Strand=Plus/Plus Query 51 GTGGTCGGAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAACAACTGAGTTTCACAAA 110 ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| Sbjct 3 GTGGTCGGAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAAGAATTGAGTTTAACAAA 62 Query 111 TCTCAATCGAGCAAAATTAGTTTGTAGGTCATGGAACTCTGCTTCGAGAGGCTGCGTTCC 170 ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| || Sbjct 63 TCTCAATCGAGCAAAATTAGTGTGTAGATCATGGAACTCTGCTTCGAGAGGCTGCGTCCC 122 Query 171 CAAACGAAATCAGATTCCGTGGATGATACTTTTCCCTCAAAAGAGCGAAAACAATAGTAG 230 |||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| Sbjct 123 CAAACGAAATCAGATTCCGTGGCTGATACTTTTCCCTCAAAAGAACGAAAACAATAGTAG 182 Query 231 CAATAACTGTGTTTTATTCGTTCCTGATGATAACGACAAAGTTTACAAGACTCGAGATCT 290 |||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 183 CAATCACTATGTATTATTCGTTCCTGATGATAAAGACAAAGTTTACAAGACTCGAGATCT 242 Query 291 CGGTGTTGACTTTGCACAAAGTAT-TTGTCTTGCGACTTACGGTAGCTGGCTCTTGATGT 349 ||||||||||||||| || ||| | ||| ||||||||| ||||||||||||||||||||| Sbjct 243 CGGTGTTGACTTTGCGCAGAGT-TGTTGCCTTGCGACTCACGGTAGCTGGCTCTTGATGT 301 Query 350 TTAACCATCTTCGGAATCTCTACATTCTTAATCCATTGACGTTAGAGAGGATTGATCTAC 409 | ||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 302 ATGACCATCTTCAGAATCTTTACATTCTTAATCCATTGACGTTAGAGAGGGTTGATCTAC 361 Query 410 CACATTCCA-CCTCTATCAATCCAAATATG-TGCTATCCAAACTTCAAATACTACCGATC 467 ||||||| | |||||||| ||| |||| | | | ||||||| || | || | ||||||| Sbjct 362 CACATTC-AGCCTCTATCTTTCCTAATAAGCT-CAATCCAAATTTTAGATGCAACCGATC 419 Query 468 AGCTTGTCTCTGGATAAACAACATAACCAAAGATTACCTAGTTGTTTGGCCCATCTATAA 527 |||||||||||||||| || ||||| |||||||||||||||||||||||| |||| || | Sbjct 420 AGCTTGTCTCTGGATAGACGACATAGCCAAAGATTACCTAGTTGTTTGGCTCATCGATTA 479 Query 528 CAAATGtttttttACAAAGAAAGGTGATGACACATGGCGATTCGCTCCCGCTTGTCACAT 587 |||| ||| |||| |||||||||||||||| ||||||| ||| | | ||| ||| | Sbjct 480 CAAAAGTTATTTTGCAAAGAAAGGTGATGATACATGGC--TTC-C-C--GCTGGTCTGTT 533 Query 588 TCGGATGAAAGATCAAATTATCTATAATCACAAAGATCACAAGGT-TTACCAGTATGCTT 646 | ||| | |||| |||||||||||||||||||||||||||||| || | ||||| ||| Sbjct 534 TTGGA--AT-GATCGAATTATCTATAATCACAAAGATCACAAGGTCTTTC-AGTATTCTT 589 Query 647 CCTATGGCTT-TATCTATGTTTGGGATTTCTCTAGTGATATCCCTCATGTAGATAAGCAT 705 ||| ||| | ||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 590 CCT----CTTATGTCTGTGTTTGGGATTTCGCTAGTGATATCCCTCATGTAGATAAGCAT 645 Query 706 C-TACCAGCTGTTAGCTTCATTTCTGGCCGTGAGATTGGTGACAAGAACAAATACTAT-- 762 | | | ||||||| | || ||| | | ||||||||||| | |||| || | || Sbjct 646 CATTT-ACCTGTTAGATCCA---CTGATCATCAGATTGGTGACGATAACAGATTCAATCT 701 Query 763 AGGATAAGTCATCAGATGGTGATGTCATTGTCTGGAGAAGTTGTGGTGGTAAAAATAATG 822 || ||||||||||||| || | ||||||||||||||||||||| |||||||||||||| Sbjct 702 AG--TAAGTCATCAGATTGTAACATCATTGTCTGGAGAAGTTGTGCTGGTAAAAATAATG 759 Query 823 CACTACTACGACCTCTCAAG-ATGGCGTTTTCGCATCTTCGAGTTAAATCCTCTGACGCA 881 ||| ||||| ||||| || | ||||||||||||| ||| ||||||||||| | ||||| | Sbjct 760 CACCACTACAACCTCCCA-GTATGGCGTTTTCGCGTCTACGAGTTAAATCTTTTGACGGA 818 Query 882 GAGATGGGT-AAAAGTCGATTCTTTAGGTGATGCGGCTATAATCTTGGACATGGGTATCA 940 || || | | |||| | |||||||||||||||||||||||||||||||||||| |||||| Sbjct 819 GACATTGATTAAAATT-GATTCTTTAGGTGATGCGGCTATAATCTTGGACATGAGTATCA 877 Query 941 CTGTTGTCGCTAAAGATATTCCAGGGATCAAGAAAAACTCCATTTATTTCAGTGGCCTCA 1000 |||||||||| ||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 878 CTGTTGTCGCCAAATATATCCCAGGGATAAAGAAAAACTCCATTTATTTCAGTGGCCTCG 937 Query 1001 ACCACCCCTTAACGGATCCCGAA-TGTAGATTTGTCTATGATCTCACAACCGGCACCATG 1059 |||||||| |||||||||| || | || |||||||||||||||||| ||| ||||||| Sbjct 938 ACCACCCCACAACGGATCCCAAACT-TAAATTTGTCTATGATCTCACCACCCACACCATG 996 Query 1060 GAACCTTTGCCACAATGCGTTCT-CTCCTCCATGCTCTTCTCTGATTCTCGATGGTTCTT 1118 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 997 GAACCTTTGCCACAATGCGT-CTTCTCCTCCATGCTCTTCTCTGATTCTCGATGGTTCTT 1055 Query 1119 ACCTGGTTTCA 1129 ||||||||||| Sbjct 1056 ACCTGGTTTCA 1066 > Ahg354999 jgi|Araly1|354999|fgenesh1_pg.C_scaffold_7002172 Length=1080 Score = 484 bits (262), Expect = 4e-136 Identities = 557/693 (80%), Gaps = 46/693 (7%) Strand=Plus/Plus Query 461 ACCGATCAGCTTGTCTCTGGATAAACAACATAACCAAAGATTACCTAGTTGTTTGGCCCA 520 |||||||||||||| |||||||| || ||||||||||||||||||||||||| ||| || Sbjct 401 ACCGATCAGCTTGTTTCTGGATAGACGACATAACCAAAGATTACCTAGTTGTGTGGTTCA 460 Query 521 TCTATAACAAATGtt-tttttACAAAGAAAGGTGATGACACATGGCGATTCGCTCCCGCT 579 |||||||| ||| || ||||||||||||||||| ||||| | ||| |||| | || || Sbjct 461 TCTATAAC-AATATTGTTTTTACAAAGAAAGGTTATGACTCGTGGAGATTTGTTCAAACT 519 Query 580 TGTCACATTCGGATGAAAGATCAAATTATCTATAATCACAAAGATCACAAGGTTTACCA- 638 || | ||||| ||| | ||||||||| ||||||||||||||||||||||||| || || Sbjct 520 AGTGAAATTCGAATGTATGATCAAATTGTCTATAATCACAAAGATCACAAGGTATA-CAC 578 Query 639 GTATGCTTCC-TATGGCT-TTATCTATGTTTGGGATTTCTCTAGTGATATCCCT--CATG 694 |||| |||| ||||| | | |||||| |||||||||||| ||||| ||||| || | Sbjct 579 TTATG-TTCCTTATGG-TCATGTCTATGAATGGGATTTCTCTGGTGATGTCCCTCCCA-G 635 Query 695 TAGATAAGCATCTA-CCAGCTGTTAGCTTCATTTCTGGCCGTGAGATTGGTGA-CAAGA- 751 ||| | ||| | | ||| ||| ||| | || ||||||| | ||| ||||| Sbjct 636 -AGACGGGTATC-ATTTACCTGCTAGTTTC--GT-TGATCGTGAGA-T--TGACCAAGAG 687 Query 752 -ACAAATACTAT-AGGATAAG--TC--ATC-AGATGGT---GA-TG-----TCATTGTCT 795 | | || |||| ||| ||| || | | | | ||| || || |||||| | Sbjct 688 GATAGATTCTATCGGGAAAAGTATCTTAACTACAAGGTAAAGATTGCAACCACATTGTAT 747 Query 796 GGAGAAGTTGTGGTGGTAAAAATAATGCACTACTACGACCTCTCAAGATGGCGTTTTCGC 855 |||||||||||| ||||| |||||||| | | | || |||| |||| |||| |||||| Sbjct 748 GGAGAAGTTGTGCTGGTAGAAATAATG--C-A-T-CG-CCTCACAAGTTGGCAATTTCGC 801 Query 856 ATCTTCGAGTTAAATCCTCTGACGCAGAGATGGGTAAAAGTCGATTCTTTAGGTGATGCG 915 ||| ||||||||||||||| ||| |||||||||||||| |||| |||||||||||| | Sbjct 802 ATCAACGAGTTAAATCCTCTAACGAAGAGATGGGTAAAAATCGACACTTTAGGTGATGAG 861 Query 916 GCTATAATCTTGGACATGGGTATCACTGTTGTCGCTAAAGATATTCCAGGGATCAAGAAA 975 ||| || |||||||||||||| ||||| | ||||| |||||||| ||||||||||||||| Sbjct 862 GCTTTACTCTTGGACATGGGTTTCACTCTCGTCGCCAAAGATATCCCAGGGATCAAGAAA 921 Query 976 AACTCCATTTATTTCAGTGGCCTCAACCACCCCTTAACGGATCCCGAATGTAGATTTGTC 1035 ||||||||||||||||||||||||||||| ||| ||| |||||| || || ||||||| Sbjct 922 AACTCCATTTATTTCAGTGGCCTCAACCATCCCATAAAGGATCCTAAACATATATTTGTC 981 Query 1036 TATGATCTCACAACCGGCACCATGGAACCTTTGCCACAATGCGTTCTCTCC-TCCATGCT 1094 ||||||||||| ||| ||||||||||||| |||||||||||||| || || |||||| | Sbjct 982 TATGATCTCACCACCCACACCATGGAACCTGTGCCACAATGCGTTTTC-CCATCCATGTT 1040 Query 1095 CTTCTCTGATTCTCGATGGTTCTTACCTGGTTT 1127 |||||||||| ||||||||||| |||||||||| Sbjct 1041 CTTCTCTGATGCTCGATGGTTCGTACCTGGTTT 1073 Score = 337 bits (182), Expect = 1e-91 Identities = 336/406 (83%), Gaps = 28/406 (7%) Strand=Plus/Plus Query 1 ATGGACCAAAGCGACAAGAACCCTAATCGGCGGCTCCGAGTGATTCC---CAAGTGGTCG 57 |||||||||||| | ||||| | ||||||| | || |||||||| |||||||| Sbjct 1 ATGGACCAAAGCAAGAAGAATTCGAATCGGC--TTTCG-GTGATTCCTAATAAGTGGTCA 57 Query 58 GAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAACAACTGAGTTTCACAAATCTCAAT 117 |||||||||| |||||||||||||||| |||| |||| | |||||||||||||||| | | Sbjct 58 GAGCTTTGTCAGGACTTGTTACGAAGTGTTTTTGAACGATTGAGTTTCACAAATCTTACT 117 Query 118 CGAGCAAAATTAGTTTGTAGGTCATGGAACTCTGCTTCGAGAGGCTGCGTTCCCAAACGA 177 |||||||||| |||||||||||| ||||||| |||||| |||| ||||| |||| | Sbjct 118 CGAGCAAAATCAGTTTGTAGGTCGTGGAACTTTGCTTCCAGAGACTGCG-TCCC---C-- 171 Query 178 AATCAGATTCCGTGGATGATACTTTTCCCTCAAAAGAGCGAAAACAAT-AGTAGCAATAA 236 |||| |||||||||| ||||||| ||||||| | || | ||| |||| | ||| | || Sbjct 172 AATCTGATTCCGTGGCTGATACTCTTCCCTCTAGAG-GAGAAGGCAATCAACAGCGACAA 230 Query 237 C--T-G-TG-TT-TTATTCGTTCCTGATGATAACGACAAAGTTTACAAGACTCGAGATCT 290 | | | || || || || ||||| |||||||| |||||| ||||||||||||||||||| Sbjct 231 CAATAGCTGCTTGTTGTTTGTTCCGGATGATAAAGACAAAATTTACAAGACTCGAGATCT 290 Query 291 CGGTGTTGACTTTGCACAAAGTATTTGTCTTGCGACTTACGGTAGCTGGCTCTTGATGTT 350 |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| Sbjct 291 CGGTGTTGACTTTGCACATAGTCTTTGTCTCGCGACTTACGGTAGCTGGCTCTTGATGTT 350 Query 351 T-A-----ACCATCTTCGGAATCTC-TACATTCTTAATCCATTGAC 389 | | ||||||||||||||| | |||||||||||||| ||||| Sbjct 351 TGAGTTTGACCATCTTCGGAATC-CATACATTCTTAATCCCTTGAC 395 > Ahg359014 jgi|Araly1|359014|fgenesh1_pg.C_scaffold_9000054 Length=918 Score = 174 bits (94), Expect = 1e-42 Identities = 137/158 (87%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 855 CATCTTCGAGTTAAATCCTCTGACGCAGAGATGGGTAAAAGTCGATTCTTTAGGTGATGC 914 ||||| | ||||| || |||||||| ||||||||||| ||| |||||||||||||||| Sbjct 729 CATCTACCAGTTAGATTCTCTGACGTGGAGATGGGTAACAGTTGATTCTTTAGGTGATGA 788 Query 915 GGCTATAATCTTGGACATGGGTATCACTGTTGTCGCTAAAGATATTCCAGGGATCAAGAA 974 ||| ||||| ||||||||||| |||| ||||||||||||||||| |||||||||||||| Sbjct 789 TGCTTTAATCGTGGACATGGGTTTCACGGTTGTCGCTAAAGATATCCCAGGGATCAAGAA 848 Query 975 AAACTCCATTTATTTCAGTGGCCTCAACCACCCC-TTA 1011 ||||||||||||||||| |||| || ||| ||| ||| Sbjct 849 AAACTCCATTTATTTCACTGGCAACAGCCATCCCATTA 886 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42392683704 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5