BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17565.1
Length=1137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890457 jgi|Araly1|890457|Al_scaffold_0007_2443 1225 0.0
Ahg354999 jgi|Araly1|354999|fgenesh1_pg.C_scaffold_7002172 484 4e-136
Ahg359014 jgi|Araly1|359014|fgenesh1_pg.C_scaffold_9000054 174 1e-42
> Ahg890457 jgi|Araly1|890457|Al_scaffold_0007_2443
Length=1074
Score = 1225 bits (663), Expect = 0.0
Identities = 955/1091 (88%), Gaps = 39/1091 (4%)
Strand=Plus/Plus
Query 51 GTGGTCGGAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAACAACTGAGTTTCACAAA 110
||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 3 GTGGTCGGAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAAGAATTGAGTTTAACAAA 62
Query 111 TCTCAATCGAGCAAAATTAGTTTGTAGGTCATGGAACTCTGCTTCGAGAGGCTGCGTTCC 170
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 63 TCTCAATCGAGCAAAATTAGTGTGTAGATCATGGAACTCTGCTTCGAGAGGCTGCGTCCC 122
Query 171 CAAACGAAATCAGATTCCGTGGATGATACTTTTCCCTCAAAAGAGCGAAAACAATAGTAG 230
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 123 CAAACGAAATCAGATTCCGTGGCTGATACTTTTCCCTCAAAAGAACGAAAACAATAGTAG 182
Query 231 CAATAACTGTGTTTTATTCGTTCCTGATGATAACGACAAAGTTTACAAGACTCGAGATCT 290
|||| ||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 183 CAATCACTATGTATTATTCGTTCCTGATGATAAAGACAAAGTTTACAAGACTCGAGATCT 242
Query 291 CGGTGTTGACTTTGCACAAAGTAT-TTGTCTTGCGACTTACGGTAGCTGGCTCTTGATGT 349
||||||||||||||| || ||| | ||| ||||||||| |||||||||||||||||||||
Sbjct 243 CGGTGTTGACTTTGCGCAGAGT-TGTTGCCTTGCGACTCACGGTAGCTGGCTCTTGATGT 301
Query 350 TTAACCATCTTCGGAATCTCTACATTCTTAATCCATTGACGTTAGAGAGGATTGATCTAC 409
| ||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 302 ATGACCATCTTCAGAATCTTTACATTCTTAATCCATTGACGTTAGAGAGGGTTGATCTAC 361
Query 410 CACATTCCA-CCTCTATCAATCCAAATATG-TGCTATCCAAACTTCAAATACTACCGATC 467
||||||| | |||||||| ||| |||| | | | ||||||| || | || | |||||||
Sbjct 362 CACATTC-AGCCTCTATCTTTCCTAATAAGCT-CAATCCAAATTTTAGATGCAACCGATC 419
Query 468 AGCTTGTCTCTGGATAAACAACATAACCAAAGATTACCTAGTTGTTTGGCCCATCTATAA 527
|||||||||||||||| || ||||| |||||||||||||||||||||||| |||| || |
Sbjct 420 AGCTTGTCTCTGGATAGACGACATAGCCAAAGATTACCTAGTTGTTTGGCTCATCGATTA 479
Query 528 CAAATGtttttttACAAAGAAAGGTGATGACACATGGCGATTCGCTCCCGCTTGTCACAT 587
|||| ||| |||| |||||||||||||||| ||||||| ||| | | ||| ||| |
Sbjct 480 CAAAAGTTATTTTGCAAAGAAAGGTGATGATACATGGC--TTC-C-C--GCTGGTCTGTT 533
Query 588 TCGGATGAAAGATCAAATTATCTATAATCACAAAGATCACAAGGT-TTACCAGTATGCTT 646
| ||| | |||| |||||||||||||||||||||||||||||| || | ||||| |||
Sbjct 534 TTGGA--AT-GATCGAATTATCTATAATCACAAAGATCACAAGGTCTTTC-AGTATTCTT 589
Query 647 CCTATGGCTT-TATCTATGTTTGGGATTTCTCTAGTGATATCCCTCATGTAGATAAGCAT 705
||| ||| | ||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 590 CCT----CTTATGTCTGTGTTTGGGATTTCGCTAGTGATATCCCTCATGTAGATAAGCAT 645
Query 706 C-TACCAGCTGTTAGCTTCATTTCTGGCCGTGAGATTGGTGACAAGAACAAATACTAT-- 762
| | | ||||||| | || ||| | | ||||||||||| | |||| || | ||
Sbjct 646 CATTT-ACCTGTTAGATCCA---CTGATCATCAGATTGGTGACGATAACAGATTCAATCT 701
Query 763 AGGATAAGTCATCAGATGGTGATGTCATTGTCTGGAGAAGTTGTGGTGGTAAAAATAATG 822
|| ||||||||||||| || | ||||||||||||||||||||| ||||||||||||||
Sbjct 702 AG--TAAGTCATCAGATTGTAACATCATTGTCTGGAGAAGTTGTGCTGGTAAAAATAATG 759
Query 823 CACTACTACGACCTCTCAAG-ATGGCGTTTTCGCATCTTCGAGTTAAATCCTCTGACGCA 881
||| ||||| ||||| || | ||||||||||||| ||| ||||||||||| | ||||| |
Sbjct 760 CACCACTACAACCTCCCA-GTATGGCGTTTTCGCGTCTACGAGTTAAATCTTTTGACGGA 818
Query 882 GAGATGGGT-AAAAGTCGATTCTTTAGGTGATGCGGCTATAATCTTGGACATGGGTATCA 940
|| || | | |||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 819 GACATTGATTAAAATT-GATTCTTTAGGTGATGCGGCTATAATCTTGGACATGAGTATCA 877
Query 941 CTGTTGTCGCTAAAGATATTCCAGGGATCAAGAAAAACTCCATTTATTTCAGTGGCCTCA 1000
|||||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 878 CTGTTGTCGCCAAATATATCCCAGGGATAAAGAAAAACTCCATTTATTTCAGTGGCCTCG 937
Query 1001 ACCACCCCTTAACGGATCCCGAA-TGTAGATTTGTCTATGATCTCACAACCGGCACCATG 1059
|||||||| |||||||||| || | || |||||||||||||||||| ||| |||||||
Sbjct 938 ACCACCCCACAACGGATCCCAAACT-TAAATTTGTCTATGATCTCACCACCCACACCATG 996
Query 1060 GAACCTTTGCCACAATGCGTTCT-CTCCTCCATGCTCTTCTCTGATTCTCGATGGTTCTT 1118
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 997 GAACCTTTGCCACAATGCGT-CTTCTCCTCCATGCTCTTCTCTGATTCTCGATGGTTCTT 1055
Query 1119 ACCTGGTTTCA 1129
|||||||||||
Sbjct 1056 ACCTGGTTTCA 1066
> Ahg354999 jgi|Araly1|354999|fgenesh1_pg.C_scaffold_7002172
Length=1080
Score = 484 bits (262), Expect = 4e-136
Identities = 557/693 (80%), Gaps = 46/693 (7%)
Strand=Plus/Plus
Query 461 ACCGATCAGCTTGTCTCTGGATAAACAACATAACCAAAGATTACCTAGTTGTTTGGCCCA 520
|||||||||||||| |||||||| || ||||||||||||||||||||||||| ||| ||
Sbjct 401 ACCGATCAGCTTGTTTCTGGATAGACGACATAACCAAAGATTACCTAGTTGTGTGGTTCA 460
Query 521 TCTATAACAAATGtt-tttttACAAAGAAAGGTGATGACACATGGCGATTCGCTCCCGCT 579
|||||||| ||| || ||||||||||||||||| ||||| | ||| |||| | || ||
Sbjct 461 TCTATAAC-AATATTGTTTTTACAAAGAAAGGTTATGACTCGTGGAGATTTGTTCAAACT 519
Query 580 TGTCACATTCGGATGAAAGATCAAATTATCTATAATCACAAAGATCACAAGGTTTACCA- 638
|| | ||||| ||| | ||||||||| ||||||||||||||||||||||||| || ||
Sbjct 520 AGTGAAATTCGAATGTATGATCAAATTGTCTATAATCACAAAGATCACAAGGTATA-CAC 578
Query 639 GTATGCTTCC-TATGGCT-TTATCTATGTTTGGGATTTCTCTAGTGATATCCCT--CATG 694
|||| |||| ||||| | | |||||| |||||||||||| ||||| ||||| || |
Sbjct 579 TTATG-TTCCTTATGG-TCATGTCTATGAATGGGATTTCTCTGGTGATGTCCCTCCCA-G 635
Query 695 TAGATAAGCATCTA-CCAGCTGTTAGCTTCATTTCTGGCCGTGAGATTGGTGA-CAAGA- 751
||| | ||| | | ||| ||| ||| | || ||||||| | ||| |||||
Sbjct 636 -AGACGGGTATC-ATTTACCTGCTAGTTTC--GT-TGATCGTGAGA-T--TGACCAAGAG 687
Query 752 -ACAAATACTAT-AGGATAAG--TC--ATC-AGATGGT---GA-TG-----TCATTGTCT 795
| | || |||| ||| ||| || | | | | ||| || || |||||| |
Sbjct 688 GATAGATTCTATCGGGAAAAGTATCTTAACTACAAGGTAAAGATTGCAACCACATTGTAT 747
Query 796 GGAGAAGTTGTGGTGGTAAAAATAATGCACTACTACGACCTCTCAAGATGGCGTTTTCGC 855
|||||||||||| ||||| |||||||| | | | || |||| |||| |||| ||||||
Sbjct 748 GGAGAAGTTGTGCTGGTAGAAATAATG--C-A-T-CG-CCTCACAAGTTGGCAATTTCGC 801
Query 856 ATCTTCGAGTTAAATCCTCTGACGCAGAGATGGGTAAAAGTCGATTCTTTAGGTGATGCG 915
||| ||||||||||||||| ||| |||||||||||||| |||| |||||||||||| |
Sbjct 802 ATCAACGAGTTAAATCCTCTAACGAAGAGATGGGTAAAAATCGACACTTTAGGTGATGAG 861
Query 916 GCTATAATCTTGGACATGGGTATCACTGTTGTCGCTAAAGATATTCCAGGGATCAAGAAA 975
||| || |||||||||||||| ||||| | ||||| |||||||| |||||||||||||||
Sbjct 862 GCTTTACTCTTGGACATGGGTTTCACTCTCGTCGCCAAAGATATCCCAGGGATCAAGAAA 921
Query 976 AACTCCATTTATTTCAGTGGCCTCAACCACCCCTTAACGGATCCCGAATGTAGATTTGTC 1035
||||||||||||||||||||||||||||| ||| ||| |||||| || || |||||||
Sbjct 922 AACTCCATTTATTTCAGTGGCCTCAACCATCCCATAAAGGATCCTAAACATATATTTGTC 981
Query 1036 TATGATCTCACAACCGGCACCATGGAACCTTTGCCACAATGCGTTCTCTCC-TCCATGCT 1094
||||||||||| ||| ||||||||||||| |||||||||||||| || || |||||| |
Sbjct 982 TATGATCTCACCACCCACACCATGGAACCTGTGCCACAATGCGTTTTC-CCATCCATGTT 1040
Query 1095 CTTCTCTGATTCTCGATGGTTCTTACCTGGTTT 1127
|||||||||| ||||||||||| ||||||||||
Sbjct 1041 CTTCTCTGATGCTCGATGGTTCGTACCTGGTTT 1073
Score = 337 bits (182), Expect = 1e-91
Identities = 336/406 (83%), Gaps = 28/406 (7%)
Strand=Plus/Plus
Query 1 ATGGACCAAAGCGACAAGAACCCTAATCGGCGGCTCCGAGTGATTCC---CAAGTGGTCG 57
|||||||||||| | ||||| | ||||||| | || |||||||| ||||||||
Sbjct 1 ATGGACCAAAGCAAGAAGAATTCGAATCGGC--TTTCG-GTGATTCCTAATAAGTGGTCA 57
Query 58 GAGCTTTGTCCGGACTTGTTACGAAGTATTTTCGAACAACTGAGTTTCACAAATCTCAAT 117
|||||||||| |||||||||||||||| |||| |||| | |||||||||||||||| | |
Sbjct 58 GAGCTTTGTCAGGACTTGTTACGAAGTGTTTTTGAACGATTGAGTTTCACAAATCTTACT 117
Query 118 CGAGCAAAATTAGTTTGTAGGTCATGGAACTCTGCTTCGAGAGGCTGCGTTCCCAAACGA 177
|||||||||| |||||||||||| ||||||| |||||| |||| ||||| |||| |
Sbjct 118 CGAGCAAAATCAGTTTGTAGGTCGTGGAACTTTGCTTCCAGAGACTGCG-TCCC---C-- 171
Query 178 AATCAGATTCCGTGGATGATACTTTTCCCTCAAAAGAGCGAAAACAAT-AGTAGCAATAA 236
|||| |||||||||| ||||||| ||||||| | || | ||| |||| | ||| | ||
Sbjct 172 AATCTGATTCCGTGGCTGATACTCTTCCCTCTAGAG-GAGAAGGCAATCAACAGCGACAA 230
Query 237 C--T-G-TG-TT-TTATTCGTTCCTGATGATAACGACAAAGTTTACAAGACTCGAGATCT 290
| | | || || || || ||||| |||||||| |||||| |||||||||||||||||||
Sbjct 231 CAATAGCTGCTTGTTGTTTGTTCCGGATGATAAAGACAAAATTTACAAGACTCGAGATCT 290
Query 291 CGGTGTTGACTTTGCACAAAGTATTTGTCTTGCGACTTACGGTAGCTGGCTCTTGATGTT 350
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 291 CGGTGTTGACTTTGCACATAGTCTTTGTCTCGCGACTTACGGTAGCTGGCTCTTGATGTT 350
Query 351 T-A-----ACCATCTTCGGAATCTC-TACATTCTTAATCCATTGAC 389
| | ||||||||||||||| | |||||||||||||| |||||
Sbjct 351 TGAGTTTGACCATCTTCGGAATC-CATACATTCTTAATCCCTTGAC 395
> Ahg359014 jgi|Araly1|359014|fgenesh1_pg.C_scaffold_9000054
Length=918
Score = 174 bits (94), Expect = 1e-42
Identities = 137/158 (87%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 855 CATCTTCGAGTTAAATCCTCTGACGCAGAGATGGGTAAAAGTCGATTCTTTAGGTGATGC 914
||||| | ||||| || |||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 729 CATCTACCAGTTAGATTCTCTGACGTGGAGATGGGTAACAGTTGATTCTTTAGGTGATGA 788
Query 915 GGCTATAATCTTGGACATGGGTATCACTGTTGTCGCTAAAGATATTCCAGGGATCAAGAA 974
||| ||||| ||||||||||| |||| ||||||||||||||||| ||||||||||||||
Sbjct 789 TGCTTTAATCGTGGACATGGGTTTCACGGTTGTCGCTAAAGATATCCCAGGGATCAAGAA 848
Query 975 AAACTCCATTTATTTCAGTGGCCTCAACCACCCC-TTA 1011
||||||||||||||||| |||| || ||| ||| |||
Sbjct 849 AAACTCCATTTATTTCACTGGCAACAGCCATCCCATTA 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42392683704
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5