BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17570.2
Length=2359
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493120 jgi|Araly1|493120|fgenesh2_kg.7__2553__AT4G17570.1 2859 0.0
> Ahg493120 jgi|Araly1|493120|fgenesh2_kg.7__2553__AT4G17570.1
Length=2418
Score = 2859 bits (1548), Expect = 0.0
Identities = 1828/1954 (94%), Gaps = 55/1954 (3%)
Strand=Plus/Plus
Query 414 ACACACCTTTGTGGAGAAATGGACCACCAGAGAAGCCGGTATTGTGCAATGCGTGTGGAT 473
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 506 ACACACCTTTGTGGCGAAATGGACCACCAGAGAAGCCTGTATTGTGCAATGCGTGTGGAT 565
Query 474 CGCGTTGGAGGACAAAGGGAACACTTGTGAACTACACACCGCTTCATGCTCGTGCTGATG 533
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 566 CGCGTTGGAGAACAAAGGGAACACTTGTGAACTATACACCGCTTCATGCTCGTGCTGATG 625
Query 534 GTGATGAGAATGATGATCATCACAGGTTTCAAAGAATGAAGAGCATTTCTTTAGGCAATA 593
||||||||||||||||||| |||||||||||||||||||||||||||||| || || |||
Sbjct 626 GTGATGAGAATGATGATCAGCACAGGTTTCAAAGAATGAAGAGCATTTCTGTAAGCTATA 685
Query 594 AGAACAAAGAGATAAAGATGCTCAAGAGGAAAGCAATTCAAGAAAACATCATCATTAAAA 653
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 AGAACAAAGAGACAAAGATGCTCAAGAGGAAAGCAATTCAAGAAAACATCATCATTAAAA 745
Query 654 GACCGGTCTTTGAATTCAGTTATGGTTTGAAGGCGGCTGTGATAGAGGAGGATGCTAGTA 713
|||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 746 GACCGGTCTTGGAATTCAATTATGGTTTGAAGAAGGCTGTGATAGAGGAGGATGCTAGTA 805
Query 714 ATAGATCGAGTTCCGGTTCGGCTGTATCAAACTCTGAGAGCTGTGCACAGTTTAGCAGTG 773
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 806 ATAGATCAAGTTCTGGTTCGGCTGTATCAAACTCTGAGAGCTGTGCACAGTTTAGTAGTG 865
Query 774 CAGATGGGAGTGAGTTAACAGGTCCATCTCAATCTAATGCGTGGGACACAACTGTTCCTT 833
||||| | | | | |||||||||||||||||||||||||||||||||||||||
Sbjct 866 CAGAT----G-G-G-----A-GTCCATCTCAATCTAATGCGTGGGACACAACTGTTCCTT 913
Query 834 GCAAGAGGAGGACGTGTGTGGGCCGTCCTAAGTCCTCTTCTGTTGAAAAGCTCACAAAGG 893
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 914 GCAAGAGGAGGACGTGTGTGGGCCGTCCAAAGTCCTCTTCTGTTGAAAAGCTCACAAAGG 973
Query 894 ACCTTTACAATATTTTACAAGAGCAGCAATCGTCATGTCTCTCAGTTTCATCAGAGGAAG 953
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 974 ACCTTTACAATATTTTACAAGAGCAGCAATCTTCGTGTCTCTCAGTTTCATCAGAGGAAG 1033
Query 954 ATCTTCTTTTTGAGAATGAAATGTCAATGGTCTCAGTTGAGATTGGACATGGGAGTGTTC 1013
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1034 ATCTTCTTTTTGAGAATGAAATGTCAATGGTCTCTGTTGAGATTGGACATGGGAGTGTTC 1093
Query 1014 TGATGAAGAATCCCCACTCGTTTGCTCGGGAAGAGGAGTCTGAAGCCAGCTCACTCTCTT 1073
|||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||
Sbjct 1094 TGATGAAGAATCCCCATTCGTTTTCTCGGGAAGAGGAGTCTGAAGCCAGCTCGCTCTCTT 1153
Query 1074 CGATTGAGAACAAGTCCTCCATCAGTGACGCATACTCACATTCCGTGAAGCGTGTTGAGA 1133
|||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1154 CGATTGAGAACAAGTCTTCCATCAGTGAGGCATACTCACATTCTGTGAAGCGTGTTGAGA 1213
Query 1134 TTGGAGCAGTGAGAGGTTCATATTATGGTGGACAAACAATAAAGCAAGAACAATTCAAGA 1193
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1214 TTGGAGCAGAGAGAGGTTCATACTATGGTGGACAAACAATAAAGCAAGAACAATTCAAGA 1273
Query 1194 GAACCAAGTCTCAAACTGAAAGAGTGCATGTCCTGGGGAGTCATGGTTCACCACTATGTA 1253
||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1274 GAAACAAGTCTCAAACTGAAAGAGTGCATGTCCTGGGGAGCCATGGTTCACCACTCTGTA 1333
Query 1254 GCATAGATTTGAAGGATGTTTTCAACTTTGATGAGTTCATAGAACAATTCACAGAGGAAG 1313
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1334 GCATAGATTTGAAGGATGTTTTCAACTTTAATGAGTTCATAGAACAATTCACAGAGGAAG 1393
Query 1314 AACAGAAGAAACTGATGAACTTGCTTCCTCAGATTGACTCTGATGACCTTCCTCATAGCC 1373
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1394 AACAGAAGAAACTGATGAAATTGCTTCCTCAGATTGACTCTGATGACCTTCCTGATAGCC 1453
Query 1374 TCAGAATGATGTTTGAAAGTGCTCAGTTCAAGGACAACTTCTCTTTGTTTCAGCAGCTCA 1433
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1454 TCAGAATTATGTTCGAAAGTGCTCAGTTCAAGGACAACTTCTCTTTGTTTCAGCAGCTCA 1513
Query 1434 TTGCTGATGGTGTCTTTGATGTGTCTTCTTCCTCGGGGGCAAAACTCGAAGAAATCAGGA 1493
|||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 1514 TTGCTGATGGTGTCTTTGATGTCTCTTCTTCCTCTGGGGCAAAACTCGAAGACATCAGGA 1573
Query 1494 CTTTTAAGAAGCTTGCTTTGACAGATTTTAACAAATCTCGTTTGGTGGAAAGCTATAACC 1553
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1574 CTTTTAAGAAGCTTGCTTTGACAGATTTCAACAAATCTCGTTTGGTGGAAAGCTATAACC 1633
Query 1554 TCCTCAAGGAACGCGAAAAAGGGACCGGAGATTCTGTTACTACAACTTCAAAAAGCTCAA 1613
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 1634 TCCTCAAGGAACGAGAAAAAGGGACCGGGGATTCTGTTACTACAACTTCAAAAATCTCAA 1693
Query 1614 TCCCAAATGTACCTAAAAATATTGTAACCATTAAGAGGCGCTATGAAAACCAAATCCAAG 1673
|||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||
Sbjct 1694 TCCCAAATGTACCTAAAAATATTGTAACCATTAAGAGGCGCTGTGAAGACCAAAACCAAT 1753
Query 1674 TAAAGTCAGAGTCAAGGGGGCTAATGAGGAGCCCCAAAAGGGTGATGAAGATGAAAGCAA 1733
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1754 TTAAGTCAGAGTCAAGGGGGCTAATGAGGAGCCCCAAAAGGGTGATGAAGATGAAAGCAA 1813
Query 1734 GCCATGAGACAGAGAACAATGTCTCATGCTTCAGACCAAGAAGCTTGGCTTCTGTGTTTG 1793
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1814 GCCATGAGACAGAGAACAATGTCTCATGCTTCAGACCAAGAAGCTTGACTTCTGTGTTTG 1873
Query 1794 CACAAGAAGGTGGCTCTGCAGTGTTTAGCTATGAAGGTAATTGCAGTTCTGATCAAGATC 1853
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1874 CACAAGAAGGTGGCTCTGCAGTGTTTGGCTATGAAGGTAATTGCAGTTCTGATCAAGATC 1933
Query 1854 TCCTTCTTCTGGACTTGCCGTCAAACGGGTCATTTCCTCAAGCAGAGCTACTTCACCAAC 1913
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1934 TCCTTCTTCTGGACTTGCCGTCAAACGGGTCATTTCCTCAAGCAGAGCTGCTTCACCAAC 1993
Query 1914 TCTGAAAGGTCAAAGCTACAAAACCTCATTGAGCTTCTCAGAGCTTAAAGGAAGGATTCT 1973
||||| ||||||||||| || |||||||||||||||||||| ||||| |||||||| |
Sbjct 1994 TCTGAGAGGTCAAAGCTTCAGC-CCTCATTGAGCTTCTCAGAGTTTAAAAGAAGGATTTT 2052
Query 1974 TAAGCTCTCTATCTC-TCTTC-TT--T-GA---TGA-GAGATATACTCTTAAGCTTTCTG 2024
|||||||| ||||| |||| || | || ||| |||| | ||||||| ||||||||
Sbjct 2053 TAAGCTCTATATCTTATCTTGATTGATCGAGAATGACGAGAGAGACTCTTAGGCTTTCTG 2112
Query 2025 AGAAAACGACCAAAATGAGGTTTCTGCTTTAGAAATTGGAATTTGCAGACATaa-aaaaa 2083
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2113 AGAAAACGACCAAA-TGAGGTTTCTGCTTTAGAAATTGGAATTTGCAGACATAAGAAAAA 2171
Query 2084 -GGAAGGATATTTATTTGAGTCTTGCTTGGGCTTCTCTTTGGTGGTTAAGTTTATAAAG- 2141
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2172 AGGAAGGATTTTTATTTGAGTCTTGCTTGGGCTTCTCTTTTGTGGTTAAGTTTATAAAGG 2231
Query 2142 TGGGTCTTATAATATACATACATATACATAAAGCCTCTTCTCTTACCTCTCTTTCTGTGA 2201
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 2232 TGGGTCTTATAATATACATA--TATACATAAAGCCTCTTCTCTTACCTCTCTTTCAGTGA 2289
Query 2202 CCcttttaattttaaacttgaaagttccatcttttttggtttcttatctttggacttttt 2261
||||||||||||| ||| ||| |||||| ||| | |||| ||||
Sbjct 2290 CCCTTTTAATTTT----TTG---GTT---TCTTTT-------CTT-T----GGACCTTTT 2327
Query 2262 tagtttctgcttttttttttGTATAGGATGAAAAAGATACTGTAATATCATGTAAAC-T- 2319
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 2328 TAGTTTCTGCTTCTTTTTTTGTATAGGATGAAAA-GATACTGTAATATCATGTAAACCTC 2386
Query 2320 TCCGAAAATGCAGAAAATGGAATACATGAGTACT 2353
||| ||| ||||||||||||| || |||||||||
Sbjct 2387 TCC-AAA-TGCAGAAAATGGAGTAAATGAGTACT 2418
Score = 248 bits (134), Expect = 1e-64
Identities = 172/189 (91%), Gaps = 7/189 (4%)
Strand=Plus/Plus
Query 39 ACAGCCATTTATTAGATTCCTCTCTCACAATTAGTCTCTTCTCTTTTCTATTGGATTGTT 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ACAGCCATTTATTAGATTCCTCTCTCACAATTAGTCTCTTCTCTTTTCTATTGGATTGTT 60
Query 99 GTATTAGACTGATAGCTCAAGGAACCC-aaaaaacaaaaacca-a-aaa-a--G-ATAAC 151
||||||||||||||||||||||||||| |||||| ||||| | | ||| | | ||||
Sbjct 61 GTATTAGACTGATAGCTCAAGGAACCCCAAAAAAAAAAAAAAAGATAAACAAAGGATAAA 120
Query 152 ATAAATTATCTTCTTGAAATTGTTCTCTTTCTTGCTTTGATTTTTTCAATTTTCTTATAC 211
| |||||||||||||||||||||||||||||||| ||||||||| ||||||||| || ||
Sbjct 121 AAAAATTATCTTCTTGAAATTGTTCTCTTTCTTGGTTTGATTTTGTCAATTTTCATAAAC 180
Query 212 TGAGTTTTT 220
| |||||||
Sbjct 181 TCAGTTTTT 189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88864541585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5