BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17580.1
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493119 jgi|Araly1|493119|fgenesh2_kg.7__2552__AT4G17580.1 1090 0.0
Ahg494266 jgi|Araly1|494266|fgenesh2_kg.8__82__AT5G47120.1 307 7e-83
Ahg946464 jgi|Araly1|946464|scaffold_702693.1 67.6 1e-10
> Ahg493119 jgi|Araly1|493119|fgenesh2_kg.7__2552__AT4G17580.1
Length=740
Score = 1090 bits (590), Expect = 0.0
Identities = 693/743 (93%), Gaps = 6/743 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGCGAACGGTACGATTTGGAGCCATGATTATCTCAGAAAC-TCTCATGAATTCTC 59
||||| |||||||||||||||||||||||||||| |||||||||| || ||||||||| |
Sbjct 1 ATGGAAGCGAACGGTACGATTTGGAGCCATGATTCTCTCAGAAACTTC-CATGAATTCAC 59
Query 60 TCCGGCCGTGCAGAATCATCTTAAGCGGTTTTGTATTGTTCTTGGTTCGCATCGTTGTGT 119
||| || |||||||||||||| |||||||||||||||||||||| ||| | | |||||||
Sbjct 60 TCCTGCTGTGCAGAATCATCTAAAGCGGTTTTGTATTGTTCTTGATTCTCGTTGTTGTGT 119
Query 120 TATTGATCTCTATCTCACGTTATTCTTTGCTCTTCTTGCGTCTGCGATTGGAGCTTACAT 179
| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 120 TCTTGATCTCTATCTCACGTTATTTTTTGCTCTTCTTGCGTCTGCGTTTGGAGCTTAC-C 178
Query 180 TCACATG-G-TCTGGAATATCGGTGGAAATGTCAGTACTCTTGGATTCAGTGGAATCATG 237
|| |||| | |||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 179 TC-CATGTGCTCTGGAATATCGGTGGAAATGTCACTACTCTTGGATTCACTGGAACCATG 237
Query 238 ATTTGGTTGCGTTTCACTCTTTATGAACCTAACATGCTCTACCTTCTGTTTCTATTTGCC 297
|| |||||||||||||||| ||||| | | || | ||| | |||||||||||| | ||||
Sbjct 238 ATCTGGTTGCGTTTCACTCCTTATGCAGCAAAGAGGCTTTTCCTTCTGTTTCTCTCTGCC 297
Query 298 CTTCTTAAAGGTGCTTCAGTTGGTCCCATGATCATGCTAGTCATTGATTTTGACTCAAGC 357
|||||||||||||||||| ||||||||||||||||| | |||||||||||||| ||||||
Sbjct 298 CTTCTTAAAGGTGCTTCATTTGGTCCCATGATCATGTTGGTCATTGATTTTGATTCAAGC 357
Query 358 GTCCTGGTCACTGCATTTGTGGGAACAGCAGTAGCATTTGTGTGTTTCTCCGCTGCAGCA 417
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 358 GTCCTGGTCACTGCATTTGTGGGAACAGCAGTAGTATTTGTGTGTTTCTCCGCTGCAGCA 417
Query 418 ATGTTGGCAACGCGTAGAGAGTACCTTTACCACGGAGCTTCACTTGCTTGTTGTATGTCC 477
||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct 418 ATGTTGGCAACGCGTAGAGAGTACCTTTACCTCGGAGCTTCACTTTCTTGTAGTATGTCC 477
Query 478 ATCCTTTGGTGGGTACAAATTGCCTCTTCCATCTTCGGAGGCTCTACAACTGTCGTCAAG 537
||||||||||||||| ||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 478 ATCCTTTGGTGGGTAAAAATTGCCTCTTCGATCTTCGGTGGCTCTACAACTGTCGTCAAG 537
Query 538 TTTGAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACACACAGATG 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTTGAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACACACAGATG 597
Query 598 ATAACCGAGAAAGCACACCACGGTGATATGGACTATGTGCAACATTCTTTTACCTTTTTC 657
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 598 ATAATCGAGAAAGCACACCATGGTGATATGGACTATGTGCAACATTCTTTTACCTTTTTC 657
Query 658 ACTGACTTTGCTTCTCTATTTGTTCAAATTCTCGTTCTCAACATGTTTAGGAAGATGAAG 717
||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 658 ACTCACTTTGCTTCTCTGTTTGTTCGAATTCTCGTTCTCAACATGTTTAGGAAGATGAAG 717
Query 718 AAAGGAAGAAAAGACCGAAGAAA 740
|||||||||||||||||||||||
Sbjct 718 AAAGGAAGAAAAGACCGAAGAAA 740
> Ahg494266 jgi|Araly1|494266|fgenesh2_kg.8__82__AT5G47120.1
Length=984
Score = 307 bits (166), Expect = 7e-83
Identities = 434/559 (78%), Gaps = 36/559 (6%)
Strand=Plus/Plus
Query 130 TATCTCACGTTATTCTTTGCTCTTCTTGCGTCTGCGATTGGAGCTTA-CATTCACATGGT 188
||||||||||||| || ||||||| |||| |||||| |||||||||| | |||| || |
Sbjct 170 TATCTCACGTTATGCTGTGCTCTTGTTGCATCTGCGTTTGGAGCTTATC-TTCATGTGCT 228
Query 189 CTGGAATATCGGTGGAAATGTCAGTACTCTTGGATTCAG-TGGAATC-ATGATTTGG--- 243
||||||||| || || | | | | || |||||| | | ||||| | |||||||||
Sbjct 229 CTGGAATATTGGCGGTATTCTTACAACGATTGGATGC-GTTGGAA-CTATGATTTGGCTC 286
Query 244 -TTGCGTT-TCACTCTTTATGAAC--CTAACA-TG-CTCTAC-CTTCTGTTTCTATTTGC 296
|| | || || ||| |||||||| | || | | || | | ||||||||| | | |||
Sbjct 287 CTTTC-TTGTC-CTCCTTATGAACAAC-AAAAGAGACT-TTCTCTTCTGTTTGTGTCTGC 342
Query 297 CCTTCTTAAAGGTGCTTCAGTTGGTCCCATGATC-ATGCTAGTC-ATTGATTTTGACTCA 354
||||| |||||||||| ||||| ||| ||||| | | | | | |||||| ||||| ||
Sbjct 343 TGTTCTTGAAGGTGCTTCTGTTGGGCCCTTGATCAAAG-T-GGCAATTGATGTTGACCCA 400
Query 355 AGCGTCCTGGTCACTGCATTTGTGGGAACAGCAGTAGCATTTGTGTGTTTCTCCGCTGCA 414
||| |||| | ||||||||||| ||||| ||| |||| ||||| |||||||| ||||||
Sbjct 401 AGCATCCTTATTACTGCATTTGTTGGAACTGCAATAGCGTTTGTCTGTTTCTCGGCTGCA 460
Query 415 GCAATGTTGGCAACG-CGTAGAGAGTACCTTTACCACGGA-G-CTTCACTTGCTTGTTG- 470
|||||||| |||| | || || ||||| || |||| ||| | | | |||| | | | |
Sbjct 461 GCAATGTTAGCAA-GACGCAGGGAGTATCTCTACCTTGGAGGAC-T-ACTTTCATCTGGC 517
Query 471 TATGTCCATCCT-TTGGTGGGTACAAATTGCCTCTTCCATCTTCGGAGGCTCTACAACTG 529
| ||||||| || | |||| | || |||||||||| ||||| || |||||| || ||
Sbjct 518 T-TGTCCATGCTAAT-GTGGCTTCAGTTTGCCTCTTCGATCTTTGGTGGCTCTGCATCTA 575
Query 530 TCGTCAAGTTTGAGCTATACTTTGGACTCTTGATCTTTGTGGGATACATAGTGGTGGACA 589
|| | ||||||||| | |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 576 TCTTTAAGTTTGAGTTGTACTTTGGACTCTTGATCTTTGTGGGATACATGGTGGTGGATA 635
Query 590 CACAG-ATGATAACCGAGAAAGCACACCACGGTGATATGGACTATGTGCAACATTCTTTT 648
||||| | ||| | ||||| ||||||| ||| || |||||||| ||| ||||||| ||
Sbjct 636 CACAGGA-GATTATAGAGAAGGCACACCTCGGCGACATGGACTACGTGAAACATTCATTG 694
Query 649 ACCTTTTTCACTGACTTTG 667
||| ||||||| |||||||
Sbjct 695 ACCCTTTTCACCGACTTTG 713
> Ahg946464 jgi|Araly1|946464|scaffold_702693.1
Length=801
Score = 67.6 bits (36), Expect = 1e-10
Identities = 68/82 (83%), Gaps = 8/82 (10%)
Strand=Plus/Plus
Query 14 GTACGATTTGGAGCCATGATTATCTC-AGAAAC-T-C-TCATGAATTCTCTCCGGCCGTG 69
||| || ||||||| |||||| |||| || ||| | | ||| | | ||||||||||||||
Sbjct 58 GTAGGAGTTGGAGCTATGATTCTCTCAAG-AACTTCCGTCA-G-A-TCTCTCCGGCCGTG 113
Query 70 CAGAATCATCTTAAGCGGTTTT 91
|||||||||||||| ||| |||
Sbjct 114 CAGAATCATCTTAAACGGGTTT 135
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27410377323
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5