BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G17590.1

Length=606
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg354934 jgi|Araly1|354934|fgenesh1_pg.C_scaffold_7002107           128    4e-29


> Ahg354934 jgi|Araly1|354934|fgenesh1_pg.C_scaffold_7002107
Length=555

 Score =  128 bits (69),  Expect = 4e-29
 Identities = 84/91 (92%), Gaps = 2/91 (2%)
 Strand=Plus/Plus

Query  431  AAGGCGTTCAC-ATGTCTGATTATGTTGACCAGCTTAAAGATGATATTGCTTCTCTTTAT  489
            ||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||||||| 
Sbjct  338  AAGGC-TTCACAAGGTCTGATTATGTTGACCAGCTTAAAGATGATCTTGCTTCTCTTTAC  396

Query  490  GGGTACAATAGGTTTCTTATTAGAACTTTGG  520
            | |||||||||||||||||||| ||||||||
Sbjct  397  GTGTACAATAGGTTTCTTATTACAACTTTGG  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22149414777


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5