BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17600.1
Length=1001
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493118 jgi|Araly1|493118|fgenesh2_kg.7__2551__AT4G17600.1 1450 0.0
Ahg948204 jgi|Araly1|948204|scaffold_800091.1 508 2e-143
> Ahg493118 jgi|Araly1|493118|fgenesh2_kg.7__2551__AT4G17600.1
Length=948
Score = 1450 bits (785), Expect = 0.0
Identities = 902/956 (94%), Gaps = 17/956 (2%)
Strand=Plus/Plus
Query 38 AAGAAGAAACCACAACAATGGCGTTGTTCTCCCCGCCAATCTCTTCTTCATCTCTTCAAA 97
||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAAGCTTAACAATGGCGTTGTTCTCCCCGCCAATCTCTTCTTCATCTCTTCAAA 60
Query 98 ATCCCAATTTCATTCCCAAATTTTCATTCTCCCTCCTCTCCAGTAACCGCTTCTCTCTCC 157
||||| ||||||| |||||||| |||||||| || ||||||| |||||||||||||||||
Sbjct 61 ATCCCTATTTCATCCCCAAATTCTCATTCTCTCTTCTCTCCACTAACCGCTTCTCTCTCC 120
Query 158 TCTCCGTCACTCGAGCTTCCTCCGACAGTGGATCAACCTCTCCCACCGCCGCCGTCTCCG 217
||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 121 TCTCCGTCACTCGAGCTTCCTCCGACAGTGGATCAACCTCTCCCACCTCCGCCACCGCCG 180
Query 218 TGGAGGCTCCTGAGCCCGTGGAAGTGATAGTTAAAG-AGCCTCCGCAATCAACACCGGCG 276
| |||||||||||||| ||||| |||||| |||||| || ||||||||||||||||||||
Sbjct 181 TAGAGGCTCCTGAGCCTGTGGAGGTGATAATTAAAGAAG-CTCCGCAATCAACACCGGCG 239
Query 277 GTTAAAAAGGAAGAAACCGCCACCGCTAAAAATGTCGCCGTCGAAGGTGAAGAGATGAAA 336
|||| ||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||
Sbjct 240 GTTACAAAGGAAGAAATCACCACCGCCAAAAATGTCGCCGTTGAAGGTGAAGAGATGAAA 299
Query 337 ACAACGGAGA-GTGTTGTCAAATTCCAGGATGCGAGATGGATTAATGGAACTTGGGATCT 395
|| ||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ACGACGGAGACG-GTTATCAAATTCCAGGATGCGAGATGGATTAATGGAACTTGGGATCT 358
Query 396 GAAACAGTTCGAGAAAGATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAA 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GAAACAGTTCGAGAAAGATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAA 418
Query 456 GAGAAGAAAATGGCTAGAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTT 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAGAAGAAAATGGCTAGAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTT 478
Query 516 CGATACATCGATTATTCCATGGTGGGCTTGGATTAAGAGATACCACTTACCTGAAGCTGA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CGATACATCGATTATTCCATGGTGGGCTTGGATTAAGAGATACCACTTACCTGAAGCTGA 538
Query 576 ACTCTTAAATGGTCGTGCGGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCT 635
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ACTCTTAAATGGTCGTGCTGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCT 598
Query 636 TACCGGAGTAGGACTTGTTGATCAAATGGGGAATTTCTTCTGCAAGACACTATTGTTTGT 695
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 599 TACCGGAGTAGGACTTGTCGATCAAATGGGGAATTTCTTCTGCAAGACACTCTTGTTTGT 658
Query 696 GGCTGTGGCTGGAGTTTTGTTTATTCGTAAGAATGAGGATGTGGATAAACTCAAGAACTT 755
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 659 GGCTGTGGCTGGAGTTTTGTTTATCCGTAAGAATGAGGATGTTGATAAACTCAAGAACTT 718
Query 756 GTTTGATGAGACTACATTGTATGATAAGCAATGGCAAGCAGCTTGGAAAAATGATGATGA 815
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GTTTGATGAGACTACATTATATGATAAGCAATGGCAAGCAGCTTGGAAAAATGATGATGA 778
Query 816 TGAGTCATTGGGTTCTAAGAAGAAGTGATAACAAAGATTCTTGCTTTCtttttttGTTGT 875
|||||||||||||||||||||| |||||||||||||| || ||| |||| |||||| |
Sbjct 779 TGAGTCATTGGGTTCTAAGAAG---TGATAACAAAGATT-TT-CTTGCTTTCTTTGTTTT 833
Query 876 TGTTGTAATTAGGAGATGAACTTACCAAATGTAATATCAAGAGATTTGAACAATGTTTCC 935
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 834 TGTTGTAATTAGGAGATGAACTTACCAAATGTAATATGAAGAGATTTGAACAATGTTTCC 893
Query 936 TCAGATTA-CCGTTAATCATGTCT---AG---TCTCTACTTAACTTAATCTAATTA 984
|||||||| || || ||||| ||| || ||||||||| ||||||||||||||
Sbjct 894 TCAGATTATCC-TTGATCATTTCTTTTAGCCATCTCTACTTCACTTAATCTAATTA 948
> Ahg948204 jgi|Araly1|948204|scaffold_800091.1
Length=838
Score = 508 bits (275), Expect = 2e-143
Identities = 398/457 (87%), Gaps = 10/457 (2%)
Strand=Plus/Plus
Query 353 TCAAATTCCAGGATGCG-AGATGGATTAATGGAACTTGGGATCTGAAACAGTTCGAGAAA 411
||||||| | |||||| || ||| |||||||||||||||||||||||||||||||||||
Sbjct 330 TCAAATTTGAAGATGCGAAG-TGGGTTAATGGAACTTGGGATCTGAAACAGTTCGAGAAA 388
Query 412 GATGGAAAAACCGATTGGGATTCTGTAATCGTTGCTGAGGCAAAGAGAAGAAAATGGCTA 471
||||| ||||| |||||||||||||| |||||| ||||||||||||| |||||||||||
Sbjct 389 GATGGGAAAACAGATTGGGATTCTGTTATCGTTTCTGAGGCAAAGAGGAGAAAATGGCTT 448
Query 472 GAAGAGAATCCAGAAACAACGAGTAACGACGAACCAGTGCTTTTCGATACATCGATTATT 531
||||| || || ||||| || ||||||||||| || || || |||||||| |||||||||
Sbjct 449 GAAGATAACCCGGAAACGACTAGTAACGACGAGCCTGTACTCTTCGATACCTCGATTATT 508
Query 532 CCATGGTGGGCTTGGATTAAGAGATACCACT-TACCTGAAGCTGAAC-TCTTAAATGGTC 589
||||||||||| ||||| ||||||||||| | |||| ||||| |||| || | |||||||
Sbjct 509 CCATGGTGGGCATGGATGAAGAGATACCA-TCTACCCGAAGCCGAACTTC-TCAATGGTC 566
Query 590 GTGCGGCGATGATAGGATTCTTTATGGCTTACTTTGTCGATAGTCTTACCGGAGTAGGAC 649
|||| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 567 GTGCTGCGATGATAGGGTTCTTCATGGCTTACTTTGTTGATAGCCTTACCGGAGTAGGAC 626
Query 650 TTGTTGATCAAATGGGGAATTTCTTCTGCAAGACACTATTGTTTGTGGCTGTGGCTGGAG 709
||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||
Sbjct 627 TTGTTGATCAAATGGGGAATTTCTTCTGCAAAACACTCTTGTTTGTGGCTGTAGCCGGAG 686
Query 710 TT-TTGTTTATTCGTAAGAATGAGGATGTGGATAAACTCAAGAA-CTTGTTTGATGAGAC 767
|| || ||||| || ||||| || ||| | || ||||| ||| | || ||||||||||||
Sbjct 687 TTCTT-TTTATCCGCAAGAACGAAGATTTAGACAAACTTAAGGATCT-GTTTGATGAGAC 744
Query 768 TACATTGTATGATAAGCAATGGCAAGCAGCTTGGAAA 804
|| || ||||| || |||||||||||||| ||||||
Sbjct 745 AACGTTATATGACAAACAATGGCAAGCAGCGTGGAAA 781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37207966992
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5