BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17615.1
Length=1241
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946460 jgi|Araly1|946460|scaffold_702689.1 1133 0.0
Ahg948205 jgi|Araly1|948205|scaffold_800092.1 676 0.0
> Ahg946460 jgi|Araly1|946460|scaffold_702689.1
Length=683
Score = 1133 bits (613), Expect = 0.0
Identities = 661/684 (97%), Gaps = 3/684 (0%)
Strand=Plus/Plus
Query 264 CGTCTTA-TTTCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAAAGAATTTCGAG 322
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 CGTCTTATTTTCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAGAGAATTTCGAG 60
Query 323 GACACGAAGACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACACGAAGACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAG 120
Query 383 CATTATTTGAGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATTAACA 442
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 CATTGTTTGAGCTGTTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTCTGATAAACA 180
Query 443 AGGAGGAGTTTCAACTTGCTTTGTTCAAAAGCCGGAAGAGGGAGAATATATTTGCTAATA 502
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGAGGAGTTTCAACTTGCATTGTTCAAAAGCCGGAAGAGGGAGAATATATTTGCTAATA 240
Query 503 GGATATTTGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAA 562
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 241 GGATATTTGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTTGGGGACTTTGTAA 300
Query 563 GATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTTTACGTTTA 622
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 301 GATCACTCAATGTTTTCCACCCAAATGCTTCTCTAGAAGACAAAATAGATTTTACATTTA 360
Query 623 GGCTTTACGACATGGACTGCACGGGTTACATTGAACGACAAGAGGTCAAGCAAATGTTGA 682
|||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 361 GGCTCTACGACATGGACTGCACGGGTTACATTGAACGCCAAGAGGTCAAGCAGATGTTGA 420
Query 683 TCGCGCTTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATAATACTCG 742
|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 421 TCGCCCTTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATTATACTTG 480
Query 743 ATAAGACATTTGAAGATGCAGACGTGAATCAAGATGGAAAAATTGATAAATTAGAGTGGA 802
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 481 ATAAGACATTTGAAGATGCAGACGTGAATCAAGATGGAAAGATTGATAAGTTAGAGTGGA 540
Query 803 GTGATTTCGTAAACAAAAATCCATCATTGCTTAAGATCATGACTCTTCCATATCTCAGGG 862
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 541 GTGATTTCGTAAACAAAAATCCATCATTGCTAAAGATCATGACTCTTCCATATCTCAGGG 600
Query 863 ATATTACGACAACGTTTCCGAGTTTTGTCTTCCATTCGGAGGTCGATGAGATTGCCACAT 922
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 ATATAACGACAACGTTTCCGAGTTTTGTCTTCAATTCGGAGGTCGATGAGATTGCCACAT 660
Query 923 GAAGAAACAA-ACTGGTTTAAGAC 945
|||||||||| | ||||| |||||
Sbjct 661 GAAGAAACAATA-TGGTTGAAGAC 683
> Ahg948205 jgi|Araly1|948205|scaffold_800092.1
Length=682
Score = 676 bits (366), Expect = 0.0
Identities = 567/665 (85%), Gaps = 10/665 (2%)
Strand=Plus/Plus
Query 273 TCATCTGTAAATGGGCTGCTTCCACTCAAAGGCAGCAAAAGAATTTCGAGGACACGAAG- 331
||||||||||||||| || ||||| || | ||| || | |||||||| || |||| ||
Sbjct 11 TCATCTGTAAATGGGTTGTTTCCATTCCACGGCTGCGAGAGAATTTCCTGGTCACG-AGA 69
Query 332 ACCCTGTTAAGCTTGCCTCTGAGACAGCTTTTAGTGTGAGTGAGGTTGAAGCATTATTTG 391
||||||| ||||| || |||||||| ||||||||||| ||||| ||||||||||| | ||
Sbjct 70 ACCCTGTGAAGCTAGCTTCTGAGACTGCTTTTAGTGTTAGTGAAGTTGAAGCATTGTATG 129
Query 392 AGCTATTCAAGAGCATAAGCAGTTCGGTTGTTGATGATGGTC-TGATTAACAAGGAGGAG 450
| | ||||||||||||||||| ||||||||||| ||||| | |||| |||||||| |||
Sbjct 130 AATTGTTCAAGAGCATAAGCAGCTCGGTTGTTGACGATGG-CTTGATAAACAAGGAAGAG 188
Query 451 TTTCAACTTGCTTTGTTCAA-AAGCCGGAAGAGGGAGAATATATTTGCTAATAGGATATT 509
|||||||||||||||||||| || | | |||| ||| ||| | ||||| |||||||||||
Sbjct 189 TTTCAACTTGCTTTGTTCAAGAA-CAGAAAGAAGGAAAATTTGTTTGCCAATAGGATATT 247
Query 510 TGATATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACT 569
|||| |||||||||||||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct 248 TGATTTGTTTGATGTTAAACGAAAAGGCGTCATTGATTTTGGAGACTTTGTGAGATCACT 307
Query 570 CAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTTTACGTTTAGGCTTTA 629
|||||||||||| || |||||||||||||| || |||| ||| || || |||||||||||
Sbjct 308 CAATGTTTTCCATCCTAATGCTTCTCTAGAGGAGAAAACAGACTTCACCTTTAGGCTTTA 367
Query 630 CGACATGGACTGCAC-GGGTTACATTGAACGACAAGAGGTCAAGCAAATGTTGATCGCGC 688
||||||||||||||| || || |||||| || |||||||| ||||||||| |||| || |
Sbjct 368 CGACATGGACTGCACAGGCTT-CATTGAGCGCCAAGAGGTGAAGCAAATGCTGATTGCAC 426
Query 689 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGAAACCATAGAGATAATACTCGATAAGA 748
|||||||||||||||||||||||||||||||||| || |||||||| ||||| ||| |||
Sbjct 427 TTCTCTGCGAATCTGAAATGAAACTGGCTGATGATACAATAGAGATGATACTGGATCAGA 486
Query 749 CATTTGAAGATGCAGACGTGAATCAAGATGGAAAAATTGATAA-ATTAGAGTGGAGTGAT 807
||||||| || ||||||||| ||| |||||||| |||||||| | ||| ||||| |
Sbjct 487 CATTTGAGGACGCAGACGTGGATCGGGATGGAAAGATTGATAAGAC-AGAATGGAGCAAC 545
Query 808 TTCGTAAACAAAAATCCATCATTGCTTAAGATCATGACTCTTCCATATCTCAGGGATATT 867
||||| | |||||| ||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 546 TTCGTCATCAAAAACCCATCTTTGCTTAAAATCATGACTCTTCCGTATCTCAGGGATATA 605
Query 868 ACGACAACGTTTCCGAGTTTTGTCTTCCATTCGGAGGTCGATGAGATTGCCACATGAAGA 927
|| || ||||||||||||||||| || | |||||||| || || ||||| || ||||||
Sbjct 606 ACCACGACGTTTCCGAGTTTTGTTTTTAACTCGGAGGTGGACGAAATTGCTACGTGAAGA 665
Query 928 AACAA 932
|||||
Sbjct 666 AACAA 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46357467072
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5