BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17640.1
Length=1374
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493113 jgi|Araly1|493113|fgenesh2_kg.7__2546__AT4G17640.1 1775 0.0
Ahg494272 jgi|Araly1|494272|fgenesh2_kg.8__88__AT5G47080.1 697 0.0
> Ahg493113 jgi|Araly1|493113|fgenesh2_kg.7__2546__AT4G17640.1
Length=1289
Score = 1775 bits (961), Expect = 0.0
Identities = 1228/1343 (91%), Gaps = 73/1343 (5%)
Strand=Plus/Plus
Query 1 CCCTGTTCTTTTATTCTTTTCTTATCTA-C------aaaaaaaaCTTCGAGCAAGAAC-- 51
|||||||||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1 CCCTGTTCTTTTATTCTTTTCTTATCTACCAAAAAAAAAAAAAACTACGAGCAAGAACAA 60
Query 52 -aaaaaaa-aaaaaCTGTCCATGTACCACACCATGAGATTAGTTGTCAGATAGATATTCG 109
||||||| ||||||||| ||||| | ||||| |||| |||||||||||||||||||||
Sbjct 61 AAAAAAAATAAAAACTGT--ATGTA-C-CACCAAGAGACTAGTTGTCAGATAGATATTCG 116
Query 110 CGAGACGAGAAGCTCCAATTAAAAACCCTAGAGCTCATCTCTCTCTCCAGGTACGGCCTT 169
|||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||
Sbjct 117 CGAGACGAGAAGCTTTAATTCAAAACCCTAGAGCTCA--TCTCTCTCCAGGTACGGCCTT 174
Query 170 TTCGTTTTTGGCTTTCACCGGCGTGGATCTCCGGTGACGGGGAGATTCGGAATTTCGGAG 229
|||||||||||||||||||||||||||||| | | | | | | | | | |
Sbjct 175 TTCGTTTTTGGCTTTCACCGGCGTGGATCT-C-----C---G-G--T--G-A---C-G-G 214
Query 230 AGATTTTAGATCATGTATAGGGAGAGAGGTATGGTTGGATCGAAGTCGGAGGTGGTCGAT 289
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 215 -G---TTAGATCATGTATAGGGAGAGGGGTATGGTTGGATCGAAGTCGGAGGTGGTCGAT 270
Query 290 CGGAAACGAATAAACGAGATTCACGATAA-CAGGCCTTCGCATTCGATGTCTCAGCCTGT 348
||||||||||||||||||||||||||||| | | || |||||||||||||||||||| ||
Sbjct 271 CGGAAACGAATAAACGAGATTCACGATAATC-GACCCTCGCATTCGATGTCTCAGCCCGT 329
Query 349 CAATGGAAAAGGCAAGGTAACATCGACCTCCGTTTTGATGGGGAAGCAGCAATTGCATGA 408
|||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 330 CAATGGAAAAGGCAAGGTAACAGCGACCTCCGTTTTTATGGGAAAGCAGCAATTGCATGA 389
Query 409 TAAGGAATCTTCACGTTCTGGTTCTATCTCTAAGACTAACATTTCCGACGCTGTGGATAT 468
| ||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 390 T-AGGGA--TTCACGTTCTGGTTCTATCTCCAAGACTAACATTTCCGACGCTGTAGATAT 446
Query 469 ATCAGACACAGACAGCGAAGAATCAGAGGTCAGTGGTTCTGATGGAGAGGACACCTCGTG 528
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct 447 ATCAGACACAGACAGTGAAGAATCAGAGGTTAGTGGTTCTGATGGAGAGGATACCTCATG 506
Query 529 GATATCTTGGTTCTGCAACCTTCGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTA 588
|||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 507 GATATCGTGGTTCTGCAACCTACGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTA 566
Query 589 CATCCAGGATGACTTTAACTTGTGTGGACTCAGCCATCAAGTTCCTTACTACGACTATGC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 CATCCAGGATGACTTTAACTTGTGTGGACTCAGCCATCAAGTTCCTTACTACGACTATGC 626
Query 649 CCTTGATTTGATTTTGGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAGGAACAGAA 708
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 627 CCTTGATTTGATTTTGGATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAAGAGCAGAA 686
Query 709 TGAATTGATCGAGTCAGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTTCATATT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 687 TGAATTGATCGAGTCAGCAGCAGAGATGCTATATGGAATGATTCATGCTCGTTACATATT 746
Query 769 GACTAGCAAAGGGCTGGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGATG 828
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GACAAGCAAAGGGCTGGCTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGATG 806
Query 829 CCCAAGAGTTTATTGTTGTGGCCAACCTTGTTTACCAGTTGGTCAATCCGATATCCCTAG 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 807 CCCAAGAGTTTATTGTTGTGGCCAACCTTGTTTACCAGTTGGTCAATCCGATATCCCTCG 866
Query 889 AGCAAGCACCGTAAAGATATACTGCCCAAAATGTGAAGATGTCTATTACCCACGATCAAA 948
||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 867 AGCAAGCACCGTAAAGATATATTGCCCCAAATGTGAAGACGTCTATTACCCACGATCAAA 926
Query 949 ATACCAAGGAAACATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTTGAT 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 927 ATACCAAGGAAACATAGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTTGAT 986
Query 1009 GACGTACGGGCATCTGAAGCCACAAAAGGCATCACAAAGCTACACTCAAAGAGTGTTTGG 1068
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 987 GACGTACGGACATCTGAAGCCACAAAAGGCATCACAAAGCTACACTCCAAGAGTGTTTGG 1046
Query 1069 GTTCAAGCTACACAAGCCGTGAAGGAAACAAGGAAGAAGAAATGCACCCTTGGGTTTTGA 1128
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GTTCAAGTTACACAAGCCGTGAAGGAAACAAGGAAGAAGAAATGCACCCTTGGGTTTTGA 1106
Query 1129 GAAACAAGAAATGTGTGTaaacaaaacaaa-aagaaaaa-GACCATTTGTATCACAGAAG 1186
||||||| ||| |||||||||||||||||| || ||||| ||||| |||| ||||
Sbjct 1107 GAAACAAAAAACGTGTGTAAACAAAACAAACAAAAAAAAAGACCA---GTAT----GAAG 1159
Query 1187 GTGAAACTAGTTCCAtctctctctctctctctctct-TTTTCTTTGTTTTTGGTATTGTG 1245
||||||||||||| ||||||| | || |||||| | |||| ||| ||||| | ||||
Sbjct 1160 GTGAAACTAGTTC--TCTCTCTTT-TC-CTCTCTTTGTTTT-TTT-TTTTT--T-TTGTA 1210
Query 1246 TTTAGGTTTAGATAAAACATTAGCAGCATGGACTGGTGAACTGAAATCCCAT-ATTAT-- 1302
|| ||| | | ||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1211 TT--GGTAAA-A-AAAACATTAGCAGCATGGACTGGTGAAATGAAATCCCATTATTATAA 1266
Query 1303 T-GTAATACTTTACCTTATTGTT 1324
| |||||||||||||||||||||
Sbjct 1267 TTGTAATACTTTACCTTATTGTT 1289
> Ahg494272 jgi|Araly1|494272|fgenesh2_kg.8__88__AT5G47080.1
Length=1220
Score = 697 bits (377), Expect = 0.0
Identities = 618/733 (84%), Gaps = 21/733 (3%)
Strand=Plus/Plus
Query 372 CGACCTCCGTTTTGATGGGGAAGCAGCAAT-TGCATGA-TA-AGGAATCTTCACGTTCTG 428
||| |||||||||||| ||||||||||| | | ||||| | | | | ||| |||||||
Sbjct 276 CGAACTCCGTTTTGATTGGGAAGCAGCAGTCT-CATGACCATA-G-AGATTCTCGTTCTG 332
Query 429 GTTCTATCTCTAAGACTAACATTTCCGACGCTG-TGGAT-ATATCAGACACAGACAGCGA 486
|||| |||| ||| |||| | | ||| | ||| | ||||||||| || || ||
Sbjct 333 CTTCTCTCTCGAAG---AACAATAATGTTTCTGAT-GATGA-ATCAGACACGGATAGTGA 387
Query 487 AGAATCAGAGGTCAGTGGTTCTGATGGAGAGGACACCTCGTGGATATCTTGGTTCTGCAA 546
|||||| || || |||||||||||||||||||| || || |||||||||||||| || ||
Sbjct 388 AGAATCGGATGTTAGTGGTTCTGATGGAGAGGATACTTCATGGATATCTTGGTTTTGTAA 447
Query 547 CCTTCGTGGGAACGAGTTCTTCTGTGAAGTTGATGATGATTACATCCAGGATGACTTTAA 606
|| || || ||||||||||| |||||||||||||||||||| || || |||||||||||
Sbjct 448 TCTACGAGGAAACGAGTTCTTTTGTGAAGTTGATGATGATTATATTCAAGATGACTTTAA 507
Query 607 CTTGTGTGGACTCAGCCA-TCAAGTTCCTTACTACGACTATGCCCTTGATTTGATTTTGG 665
| ||||||||||||| || || ||||| |||||||| || || ||||||||||||||||
Sbjct 508 CCTGTGTGGACTCAG-CAGTCTTGTTCCCTACTACGAGTACGCTCTTGATTTGATTTTGG 566
Query 666 ATGTGGAGTCTTCGCATGGTGAGATGTTTACAGAGGAACAGAATGAATTGATCGAGTCAG 725
|||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 567 ATGTTGAATCTTCTCATGGAGAGATGTTTACAGAGGAACAGAATGAATTGATCGAGTCAG 626
Query 726 CAGCAGAGATGCTATATGGAATGATTCATGCTCGTTTCATATTGACTAGCAAAGGGCTGG 785
|||| |||||||| || ||| ||||||| ||||||| |||||||||||||||||| |||
Sbjct 627 CAGCTGAGATGCTTTACGGATTGATTCACGCTCGTTACATATTGACTAGCAAAGGATTGG 686
Query 786 CTTCTATGTTAGACAAATACAAAAACTATGACTTTGGAAGATGCCCAAGAGTTTATTGTT 845
|| | |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 687 CTGCGATGTTAGACAAATACAAAAACTATGACTTTGGAAGATGTCCAAGAGTTTATTGCT 746
Query 846 GTGGCCAACCTTGT-TTACCAGTTGGTCAATCCGA-TATCCCTAGAGCAAGCACCGTAAA 903
|||||||||||||| || || ||||||||||| || | | ||| || | ||||| || ||
Sbjct 747 GTGGCCAACCTTGTCTT-CCGGTTGGTCAATCGGACT-TACCTCGATCTAGCACTGTGAA 804
Query 904 GATATACTGCCCAAAATGTGAAGATGTCTATTACCCACGATCAAAATACCAAGGAAACAT 963
|||||| ||||| ||||| ||||| | ||||||||||| || || || ||||| |||||
Sbjct 805 GATATATTGCCCGAAATGCGAAGACATTTATTACCCACGGTCGAAGTATCAAGGCAACAT 864
Query 964 AGATGGAGCTTACTTTGGGACAACGTTTCCACATCTGTTCTTGATGACGTACGGGCATCT 1023
||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||||
Sbjct 865 TGATGGAGCTTACTTTGGGACAACATTTCCACATCTGTTCCTGATGACTTATGGGCATCT 924
Query 1024 GAAGCCA-CAAAAGGCATCACAAAGCTACACTCAAAGAGTGTTTGGGTTCAAGCTACACA 1082
|||||| |||| |||| | |||| ||| ||||||||| ||||||||||| |||| |
Sbjct 925 CAAGCCATCAAA-GGCAACGCAAAACTATGTTCAAAGAGTTTTTGGGTTCAAATTACATA 983
Query 1083 AGCCGTGAAGGAA 1095
|||||||||||||
Sbjct 984 AGCCGTGAAGGAA 996
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51427815033
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5