BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17650.1
Length=1221
Score E
Sequences producing significant alignments: (Bits) Value
Ahg493112 jgi|Araly1|493112|fgenesh2_kg.7__2545__AT4G17650.1 1567 0.0
> Ahg493112 jgi|Araly1|493112|fgenesh2_kg.7__2545__AT4G17650.1
Length=1105
Score = 1567 bits (848), Expect = 0.0
Identities = 1007/1081 (93%), Gaps = 21/1081 (2%)
Strand=Plus/Plus
Query 143 CTCTATTCTTTTGATTAGCATCCCTAAAACTAAAATCGCAGAGAGAA-TTTCTCC----G 197
|||||||| ||||||||| |||||||||||||||||| ||||||| ||||||| |
Sbjct 33 CTCTATTC--GTGATTAGCAACCCTAAAACTAAAATCGCCGAGAGAATTTTCTCCGTTTG 90
Query 198 -T-TTGGATCTCTACCAAATTGGGGCGCT--TTTGGGAATAATGCCACCGTTTATGTCTG 253
| |||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||
Sbjct 91 TTATTGGATCTCTACCAAATT-GGGCGTTGGTTTTGGAATAATGCCACCGTTTATGTCTG 149
Query 254 GTCTCAGAGCTGTATCTTCCTTACTTTCATGTCGAAACGCGATTAGCAGGAAACTCGTTA 313
| || |||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 150 GCCTGAGAGCTGTATCTTCCTTAGTTTCATGTCGAAACGCGATTAGCAGGAACCTGGTTA 209
Query 314 GTCGTTCTGGGATCCCTCGAGGGAGTTTTGTATCAGATCAAATTAGGAGATTTGGTTCTC 373
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 210 GTCGTTCGGGGATCCCTCGAGGGAGTTTTGTATCCGATCAAATTAGGAGATTTGGTTCTC 269
Query 374 TTTCCGGCGTCGAGAGATGTTCTTCTAATTGGTTGATGTCCAATGATGACGCTAGAGTCT 433
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 270 TTTCCGGCGTCGAGAGATGTTCTTCTAATTGGCTGATGTCCAATGATGACGCTAGAGTCT 329
Query 434 CTTTCCGGAGATTGCCTGGCTCTGTGAGCCTACTTCAGAGACGGCATTTTCTGGGGTGCG 493
| ||| |||||||||| |||||||||||| ||||||||||||||||||||||||| || |
Sbjct 330 CATTCGGGAGATTGCCCGGCTCTGTGAGCTTACTTCAGAGACGGCATTTTCTGGGTTGTG 389
Query 494 GAGATGGGGAAGAAGGTGGTGGTGAGTTATCAAAGATCTATGAAGAGAGACGTGTCTTAG 553
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 390 GAGATGGGGAAGAAGGTGGTGGTGAGTTATCAAAGATCTACGAAGAGAGACGTGTTTTAG 449
Query 554 GGTATACTCCGGAGCAAATGTTTAACGTAGTTGCAGCTGTAGACTTGTACCATGGATTTG 613
||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 450 GGTATTCTCCGGAGCAATTGTTTAACGTAGTTGCAGCTGTAGACTTGTACCACGGATTTG 509
Query 614 TTCCTTGGTGTCAGCGCTCTGAGGTTCTTAAAGAATACCCTGATGGGTCATTTGATGCTG 673
||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 510 TTCCTTGGTGTCAACGCTCCGAGGTTCTTAAAGAATACCCAGATGGCTCATTTGATGCTG 569
Query 674 AATTGGAGATTGGTTTCAAGTTTCTTGTTGAGAGTTACATTTCCCATGTCGAATCCGAGA 733
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 570 AATTGGAGATTGGTTTCAAGTTTCTTGTTGAGAGTTACATTTCCCATGTCGAATCCGAAA 629
Query 734 GGCCGAAATGGATTAAGACTACAGCGAGGGACACTGGCCTGTTTGACCATTTGATAAACC 793
||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||
Sbjct 630 GGCCGAAATGGATTAAGACAACAGCAAGGGACACCGGCCTATTTGACCATTTGATAAACC 689
Query 794 TCTGGCAATTTAAGCCAGGGCCCATTCCTGGAACCTGCGACCTTCACTTCCATGTAGATT 853
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 690 TCTGGCAATTTAAGCCAGGACCCATTCCAGGAACCTGCGACCTTCATTTCCATGTAGATT 749
Query 854 TCAAATTCAATTCACCTCTCTATCGCCAGGTGGCGTCAATGTTCTTCAAGGAGGTAGCAT 913
|||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 750 TCAAATTCAACTCACCTCTCTATCGCCAGGTGGCTTCGATGTTCTTAAAGGAGGTAGCAA 809
Query 914 CAAGACTTGTGGGGGCATTCAGTGATCGATGCCGACTAGTGTATGGTCCAGGAGTCCGAG 973
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 810 CAAGACTTGTAGGGGCATTTAGTGATCGATGCCGACTAGTGTATGGTCCAGGAGTCCAAG 869
Query 974 TAGATGAAAACGCATATGAGCAAAGAGCTTGAGACATATCTATATATATATCATGGAA-G 1032
||||||| ||||||||||||||||||||||||||||||||||||||||||| || || |
Sbjct 870 TAGATGAGAACGCATATGAGCAAAGAGCTTGAGACATATCTATATATATAT-ATATAATG 928
Query 1033 TAAC-AACACATCAGTTTAGTTTTCATCTTGTTTGCTAGAGAGCGATTGCGC--ATAGCA 1089
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 929 GAAGTAACACATCAGTTTAGTTTTCATCTTGTTTGCTAGAGAGCGATTGCGCGCATAGCA 988
Query 1090 TGTTTTGTTTTCTTAAATATATATGAATGCTTTTGCATAAGAAGATGAACACATTAGATG 1149
||||||||||| || | |||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 989 TGTTTTGTTTT-TTCA-TATATATGAATGCTTTTGCATAAGAAAATGAACACATTGGATG 1046
Query 1150 TTTGTTTAAATGTAAAAGCAGAAAAATAAACACATCCATTTCTCTGTTGGAGTCAttttt 1209
||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1047 TTTGTTTAA-TGTAAAAGCAGAAAA-TAAACACATCCATTTCTCTTTTGGAGTCATTTTT 1104
Query 1210 t 1210
|
Sbjct 1105 T 1105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45595008732
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5