BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G17660.1 Length=1209 Score E Sequences producing significant alignments: (Bits) Value Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433 1648 0.0 Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1 484 5e-136 > Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433 Length=1176 Score = 1648 bits (892), Expect = 0.0 Identities = 1070/1156 (93%), Gaps = 12/1156 (1%) Strand=Plus/Plus Query 43 ATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAGAGGAAATATGGAGAAA 102 ||||||||| ||||| |||||| |||||||||||||||||||||| ||||| || ||||| Sbjct 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAACCAAAATCCAGAAGAAATCTGAAGAAA 60 Query 103 GAGaaaaaaaaCATAAGAGGAAGAGAGTTCTTGCAAAAGTCAGCTCCAGAATTAACGACG 162 || || ||||||||||||||||||||||| || |||||||| ||||||||||||||||| Sbjct 61 GATAACAAAAACATAAGAGGAAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTAACGACA 120 Query 163 AGAAAG-ACAACTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 221 || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AG-AAGAACATCTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 179 Query 222 TATCAAAGACTTGTACACAGACAGAGAACAAAATCAAAATCAAAACCTGAGGGTTTTTTC 281 |||||||||||||||||| || ||||| |||||||||||||||||||| | |||||| || Sbjct 180 TATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCTAATGGTTTTCTC 239 Query 282 TTTCAAGGAACTGAGTGACGCCACTTGTGAGTTTAGCAGGAAGCTAAAGATCGGAGAAGG 341 || ||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 240 TTACAAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGCTGAAGATCGGAGAAGG 299 Query 342 TGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAATCCCACCGTAGGAGATTCTCATTC 401 ||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 300 TGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGAGGAGATTCTCATTC 359 Query 402 TTCTCCACTTACCGTAGCCGTTAAGAAACTCAATAGACAAAGTCTACAGGGTCACAAGCA 461 ||||||||||||||| ||| |||||||||| ||| ||||||||||||||||||||||||| Sbjct 360 TTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTCTACAGGGTCACAAGCA 419 Query 462 ATGGCTAGCAGAGGTTCACTTT-TTGGGAGTGGTGAATCACCCTAACGTTGTGAGGCTCT 520 |||||||||||||||||| ||| ||||| |||||||||||||||||||| |||||||||| Sbjct 420 ATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCTAACGTAGTGAGGCTCT 478 Query 521 TAGGGTATTGCTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGCA 580 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 479 TAGGGTATTGTTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGTA 538 Query 581 GCTTGGAGGATCATCTCTTCACTCTAAGAACCTTAACGTTGTCGTGGAAACAAAGGCTCG 640 | |||||||||||||||||||||| || ||||||||||||||| |||||||||||||| | Sbjct 539 GTTTGGAGGATCATCTCTTCACTCGAAAAACCTTAACGTTGTCATGGAAACAAAGGCTTG 598 Query 641 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 658 Query 701 GAGACTTCAAATCATCAAATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATT 760 ||||||| ||||||||||||||||| ||| | |||||||| |||||||||||||| |||| Sbjct 659 GAGACTTTAAATCATCAAATGTGCTTTTAGACGAAGAATTTCATCCGAAATTATCGGATT 718 Query 761 TTGGTCTCGCTAGAGAAGGTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTG 820 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 719 TTGGTCTCGCTAGAGAAGGTCCGGAAGGAGACAATACTCACGTTACAACCGCAAGAATTG 778 Query 821 GAACAGACGGCTATGCCGCTCCCGAGTATGTAATAACCGGTCACCTCAAGACACATTGCG 880 |||| ||||||||||| || || ||||||||||||||||| || ||||| |||||||||| Sbjct 779 GAACGGACGGCTATGCAGCACCAGAGTATGTAATAACCGGCCATCTCAAAACACATTGCG 838 Query 881 ATGTATATAGCTTTGGAGTTGTTTTGTACGAAATTATCACTGGTCGTCGCACATTGGAAC 940 |||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 839 ATGTCTATAGCTTTGGAGTTGTTTTGTACGAGATCATCACTGGTCGTCGCACATTGGAAC 898 Query 941 GAATGAAACCTTTAGCTGAACAAAAGCTTCTAGAATGGGTCAAAAAATATCCTATTAATA 1000 ||||||||||||| ||||||||||||||||||||||||||| || |||||||| | ||| Sbjct 899 GAATGAAACCTTTGGCTGAACAAAAGCTTCTAGAATGGGTCCAAGAATATCCTGTCGATA 958 Query 1001 GCAAAAGATTCAAAATGATCGTTGACTCC-AAGCTATGCAATAAGTATCCAA-TTGCTAT 1058 ||||||||||||||| |||| ||||| || |||||||||||||| |||| | || |||| Sbjct 959 GCAAAAGATTCAAAAAGATCATTGAC-CCGAAGCTATGCAATAAATATC-ATCTTCCTAT 1016 Query 1059 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAA-AGAC 1117 |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| Sbjct 1017 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAA-AAGAGAC 1075 Query 1118 CTACCATGGCCTTTGTCGTCGAAAGTCTTACGAATATCATTGAGGAA-TCAAATTCTGAA 1176 | ||||||||||| |||||||||||||||||||| || ||||||||| | || ||||||| Sbjct 1076 CCACCATGGCCTTCGTCGTCGAAAGTCTTACGAAGATTATTGAGGAAGT-AACTTCTGAA 1134 Query 1177 GATATGGGAAGTTCTG 1192 |||||||||| ||||| Sbjct 1135 GATATGGGAACTTCTG 1150 > Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1 Length=1552 Score = 484 bits (262), Expect = 5e-136 Identities = 872/1153 (76%), Gaps = 96/1153 (8%) Strand=Plus/Plus Query 41 ACATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAG--AGGAA-A-TATG 96 |||||||||||||||||||||||| || |||||||| |||||||| | || | | | Sbjct 212 ACATGAATTGTCTGTTCTTGTTCAAATCAAAGAAACCCAAATCCAGAAATCAACAGAAAG 271 Query 97 --GA-GA-AA-GA-Ga-aaaaa-aaCATAAG---AGG-AAGAGAGTTCTTGCAAAAGTCA 144 | | || | | ||||| |||| ||| ||| || ||| || || ||||| ||| Sbjct 272 ACAACAACAACAACAACAAAAAGAACAAAAGAAAAGGTAA-AGAATTGTTACAAAACTCA 330 Query 145 GCTCCAGAATTAAC-GA-CGAGAAAGACAACTTTGTCGTTCAATCTCCCA-ACACCAAGA 201 ||||||||| | || | || || || ||| | |||||| ||||| ||| || |||||| Sbjct 331 GCTCCAGAACTGACTAATCG-GAGTGA-AACGTCGTCGTTTAATCT-CCAGACGCCAAGA 387 Query 202 TC-TCTGCCATCTCCAACG-AGTATCAAAGACTTGTACACAGACAGAGAACAAAATCAAA 259 || | |||| ||||||| | ||||||||||| ||||| ||||| ||||||||||||| Sbjct 388 TCGT-TGCCTTCTCCAA-GAAGTATCAAAGATTTGTATACAGAGAGAGAACAAAATC--- 442 Query 260 ATCAAAACCTGAGGGTTTTTTCTTTC-AAGGAACTGAGTGACGCCACTTGTGAGTTTAGC 318 | | |||||||| ||| | || ||||| ||| | ||||||| || ||| ||| Sbjct 443 -T-------T-AGGGTTTTCACTTACGAA-GAACTCAGTAAAGCCACTTATGGGTTCAGC 492 Query 319 AGGAAGCTAAAGATCGGAGAAGGTGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAAT 378 || ||||| |||||| |||||||| ||||||| ||| ||||||| | ||| | | Sbjct 493 AGAAAGCTTGCGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATT--C--T 548 Query 379 CCCACCGTAGGAGATTCTCATTCTTCTCCACTTA-CCGTAGCCGTTAAGAAACTCAATAG 437 | || | ||||||||| | || |||||| || ||| ||| |||||||||||||| | Sbjct 549 -CAACAAT-GGAGATTCTGA-TC--CTCCAC-TAGTCGTCGCCATTAAGAAACTCAATCG 602 Query 438 ACAAAGTCTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCACTTT-TTGGGAGTGGTGA 496 |||| || |||||||||||||||||||||||||||||||||| ||| |||| ||| |||| Sbjct 603 ACAAGGTTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGG-AGTAGTGA 661 Query 497 ATCACCCTAACGTTGTGAGGCTCTTAGGGTATTGCTCAGAGGAC----AGA--G--A--G 546 |||| || |||||||||| |||| |||| |||||||| || ||| ||| | | | Sbjct 662 ATCATCCGAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACTGGGATCG 721 Query 547 AGA--CTTTTGGTTTACGAGT-TGATGTCTAATCGCAGCTTGGAGGATCATCTCTT-C-A 601 ||| ||||||||||| |||| | ||||| ||||| || || ||||| |||||||| | | Sbjct 722 AGAGGCTTTTGGTTTATGAGTAT-ATGTCGAATCGAAGTTTAGAGGACCATCTCTTTCCA 780 Query 602 C-TCTAAGA-ACCTTAACGTTGTCGTGGAAACAAAGGCTCGAGATCATGCTTGGTGCAGC 659 | || | | || | | || |||||||| |||| ||||||||||||||||||||||| Sbjct 781 CGTCGATCACAC---A-CATTACCGTGGAAAAAAAGACTCGAGATCATGCTTGGTGCAGC 836 Query 660 TCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATA-CAGAGACTTCAAATCATCAA 718 | |||||||||||||||| || ||| | |||| ||||| | |||| |||||||| || | Sbjct 837 TGAAGGATTGGCTTATTTACATGAACTTAAGGTTATATATC-GAGATTTCAAATCGTCTA 895 Query 719 ATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATTTTGGTCTCGCTAGAGAAG 778 ||||||| ||| | | |||||| |||||||||||| || ||||| || || ||||||| Sbjct 896 ATGTGCTCTTAGACCATGAATTCTGTCCGAAATTATCAGACTTTGGGCTTGCCAGAGAAG 955 Query 779 GTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTGGAACAGACGGCTATGCCG 838 | || || || ||||||||||| || || |||||||||||||| ||| |||||||||| | Sbjct 956 GGCCTGAGGGCGACAATACTCATGTCACTACCGCAAGAGTTGGTACACACGGCTATGCAG 1015 Query 839 CTCCCGAGTATGTA-ATAACCGGTCACCT-CAAGACACATTGCGATGTATATAGCTTTGG 896 |||| || || || | ||| ||||| || | | | | ||||||| |||||||| || Sbjct 1016 CTCCTGAATACGTGCA-AACAGGTCATCTTCG-GTTAAAGAGCGATGTCTATAGCTTCGG 1073 Query 897 AGTTGTTTTGTACGAAATTATCACTGGTCGTCGCAC-ATTG-GAACGAATGAAACCTTTA 954 ||||| | ||||| || || || || || || || |||| || ||| || || | Sbjct 1074 TGTTGTGCTCTACGAGATCATAACCGGACGCCGAACCATTGAGAG-GAAC-AAGCCAGTG 1131 Query 955 GCTGAACAAAAGCT-TCTAGAATGGGTCAAAAAATATCCTATTAATAG-CAAAAGATTCA 1012 ||||||| || ||| | | || ||||| ||| | |||||| | |||| ||| | |||| Sbjct 1132 GCTGAACGAAGGCTAT-TGGATTGGGTGAAAGAGTATCCTGCTGATAGTCAACGG-TTCA 1189 Query 1013 AAATGATCGTTGACTCCAAGCT-ATGCAATAAGTATCCAATTGCTATG-G-TCAGGAGAG 1069 |||||||||||| || | | | |||| || |||||| |||| | | | ||||| Sbjct 1190 GCATGATCGTTGAC-CCTCGGTTACGCAACAATTATCCAGCTGCTG-GAGCT-AGGAGTT 1246 Query 1070 TGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAAAGACCTACCATGGCCT 1129 |||||||||||||||||| |||| |||| |||| ||||||||| |||| || |||| Sbjct 1247 TGGCTAAATTGGCTGATCTTTGTCTGAAAAAGAACGATAAAGAGCGACCCACAATGGAAA 1306 Query 1130 TTGTCGTCGAAAG 1142 |||| || ||||| Sbjct 1307 TTGTAGTAGAAAG 1319 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45137533728 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5