BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17660.1
Length=1209
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433 1648 0.0
Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1 484 5e-136
> Ahg890447 jgi|Araly1|890447|Al_scaffold_0007_2433
Length=1176
Score = 1648 bits (892), Expect = 0.0
Identities = 1070/1156 (93%), Gaps = 12/1156 (1%)
Strand=Plus/Plus
Query 43 ATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAGAGGAAATATGGAGAAA 102
||||||||| ||||| |||||| |||||||||||||||||||||| ||||| || |||||
Sbjct 1 ATGAATTGTATGTTCGTGTTCAAGTCCAAGAAACCAAAATCCAGAAGAAATCTGAAGAAA 60
Query 103 GAGaaaaaaaaCATAAGAGGAAGAGAGTTCTTGCAAAAGTCAGCTCCAGAATTAACGACG 162
|| || ||||||||||||||||||||||| || |||||||| |||||||||||||||||
Sbjct 61 GATAACAAAAACATAAGAGGAAGAGAGTTTTTACAAAAGTCTGCTCCAGAATTAACGACA 120
Query 163 AGAAAG-ACAACTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 221
|| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AG-AAGAACATCTTTGTCGTTCAATCTCCCAACACCAAGATCTCTGCCATCTCCAACGAG 179
Query 222 TATCAAAGACTTGTACACAGACAGAGAACAAAATCAAAATCAAAACCTGAGGGTTTTTTC 281
|||||||||||||||||| || ||||| |||||||||||||||||||| | |||||| ||
Sbjct 180 TATCAAAGACTTGTACACTGAGAGAGAGCAAAATCAAAATCAAAACCTAATGGTTTTCTC 239
Query 282 TTTCAAGGAACTGAGTGACGCCACTTGTGAGTTTAGCAGGAAGCTAAAGATCGGAGAAGG 341
|| ||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 240 TTACAAGGAACTGAGTGACGCCACGTGTGAGTTTAGCAGAAAGCTGAAGATCGGAGAAGG 299
Query 342 TGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAATCCCACCGTAGGAGATTCTCATTC 401
||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 300 TGGTTTTGGTAGTGTCTATAAAGCCACCATTGACAATCCCACCGGAGGAGATTCTCATTC 359
Query 402 TTCTCCACTTACCGTAGCCGTTAAGAAACTCAATAGACAAAGTCTACAGGGTCACAAGCA 461
||||||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 360 TTCTCCACTTACCGTCGCCATTAAGAAACTTAATCGACAAAGTCTACAGGGTCACAAGCA 419
Query 462 ATGGCTAGCAGAGGTTCACTTT-TTGGGAGTGGTGAATCACCCTAACGTTGTGAGGCTCT 520
|||||||||||||||||| ||| ||||| |||||||||||||||||||| ||||||||||
Sbjct 420 ATGGCTAGCAGAGGTTCA-TTTGTTGGGCGTGGTGAATCACCCTAACGTAGTGAGGCTCT 478
Query 521 TAGGGTATTGCTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGCA 580
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 TAGGGTATTGTTCAGAGGACAGAGAGAGACTTTTGGTTTACGAGTTGATGTCTAATCGTA 538
Query 581 GCTTGGAGGATCATCTCTTCACTCTAAGAACCTTAACGTTGTCGTGGAAACAAAGGCTCG 640
| |||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |
Sbjct 539 GTTTGGAGGATCATCTCTTCACTCGAAAAACCTTAACGTTGTCATGGAAACAAAGGCTTG 598
Query 641 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGATCATGCTTGGTGCAGCTCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATACA 658
Query 701 GAGACTTCAAATCATCAAATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATT 760
||||||| ||||||||||||||||| ||| | |||||||| |||||||||||||| ||||
Sbjct 659 GAGACTTTAAATCATCAAATGTGCTTTTAGACGAAGAATTTCATCCGAAATTATCGGATT 718
Query 761 TTGGTCTCGCTAGAGAAGGTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTG 820
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 719 TTGGTCTCGCTAGAGAAGGTCCGGAAGGAGACAATACTCACGTTACAACCGCAAGAATTG 778
Query 821 GAACAGACGGCTATGCCGCTCCCGAGTATGTAATAACCGGTCACCTCAAGACACATTGCG 880
|||| ||||||||||| || || ||||||||||||||||| || ||||| ||||||||||
Sbjct 779 GAACGGACGGCTATGCAGCACCAGAGTATGTAATAACCGGCCATCTCAAAACACATTGCG 838
Query 881 ATGTATATAGCTTTGGAGTTGTTTTGTACGAAATTATCACTGGTCGTCGCACATTGGAAC 940
|||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 839 ATGTCTATAGCTTTGGAGTTGTTTTGTACGAGATCATCACTGGTCGTCGCACATTGGAAC 898
Query 941 GAATGAAACCTTTAGCTGAACAAAAGCTTCTAGAATGGGTCAAAAAATATCCTATTAATA 1000
||||||||||||| ||||||||||||||||||||||||||| || |||||||| | |||
Sbjct 899 GAATGAAACCTTTGGCTGAACAAAAGCTTCTAGAATGGGTCCAAGAATATCCTGTCGATA 958
Query 1001 GCAAAAGATTCAAAATGATCGTTGACTCC-AAGCTATGCAATAAGTATCCAA-TTGCTAT 1058
||||||||||||||| |||| ||||| || |||||||||||||| |||| | || ||||
Sbjct 959 GCAAAAGATTCAAAAAGATCATTGAC-CCGAAGCTATGCAATAAATATC-ATCTTCCTAT 1016
Query 1059 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAA-AGAC 1117
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1017 GGTCAGGAGAGTGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAA-AAGAGAC 1075
Query 1118 CTACCATGGCCTTTGTCGTCGAAAGTCTTACGAATATCATTGAGGAA-TCAAATTCTGAA 1176
| ||||||||||| |||||||||||||||||||| || ||||||||| | || |||||||
Sbjct 1076 CCACCATGGCCTTCGTCGTCGAAAGTCTTACGAAGATTATTGAGGAAGT-AACTTCTGAA 1134
Query 1177 GATATGGGAAGTTCTG 1192
|||||||||| |||||
Sbjct 1135 GATATGGGAACTTCTG 1150
> Ahg494273 jgi|Araly1|494273|fgenesh2_kg.8__89__AT5G47070.1
Length=1552
Score = 484 bits (262), Expect = 5e-136
Identities = 872/1153 (76%), Gaps = 96/1153 (8%)
Strand=Plus/Plus
Query 41 ACATGAATTGTCTGTTCTTGTTCATGTCCAAGAAACCAAAATCCAG--AGGAA-A-TATG 96
|||||||||||||||||||||||| || |||||||| |||||||| | || | | |
Sbjct 212 ACATGAATTGTCTGTTCTTGTTCAAATCAAAGAAACCCAAATCCAGAAATCAACAGAAAG 271
Query 97 --GA-GA-AA-GA-Ga-aaaaa-aaCATAAG---AGG-AAGAGAGTTCTTGCAAAAGTCA 144
| | || | | ||||| |||| ||| ||| || ||| || || ||||| |||
Sbjct 272 ACAACAACAACAACAACAAAAAGAACAAAAGAAAAGGTAA-AGAATTGTTACAAAACTCA 330
Query 145 GCTCCAGAATTAAC-GA-CGAGAAAGACAACTTTGTCGTTCAATCTCCCA-ACACCAAGA 201
||||||||| | || | || || || ||| | |||||| ||||| ||| || ||||||
Sbjct 331 GCTCCAGAACTGACTAATCG-GAGTGA-AACGTCGTCGTTTAATCT-CCAGACGCCAAGA 387
Query 202 TC-TCTGCCATCTCCAACG-AGTATCAAAGACTTGTACACAGACAGAGAACAAAATCAAA 259
|| | |||| ||||||| | ||||||||||| ||||| ||||| |||||||||||||
Sbjct 388 TCGT-TGCCTTCTCCAA-GAAGTATCAAAGATTTGTATACAGAGAGAGAACAAAATC--- 442
Query 260 ATCAAAACCTGAGGGTTTTTTCTTTC-AAGGAACTGAGTGACGCCACTTGTGAGTTTAGC 318
| | |||||||| ||| | || ||||| ||| | ||||||| || ||| |||
Sbjct 443 -T-------T-AGGGTTTTCACTTACGAA-GAACTCAGTAAAGCCACTTATGGGTTCAGC 492
Query 319 AGGAAGCTAAAGATCGGAGAAGGTGGCTTTGGTAGTGTCTATAAAGCCACCATTAACAAT 378
|| ||||| |||||| |||||||| ||||||| ||| ||||||| | ||| | |
Sbjct 493 AGAAAGCTTGCGATCGGTGAAGGTGGATTTGGTATTGTTTATAAAGGAAAGATT--C--T 548
Query 379 CCCACCGTAGGAGATTCTCATTCTTCTCCACTTA-CCGTAGCCGTTAAGAAACTCAATAG 437
| || | ||||||||| | || |||||| || ||| ||| |||||||||||||| |
Sbjct 549 -CAACAAT-GGAGATTCTGA-TC--CTCCAC-TAGTCGTCGCCATTAAGAAACTCAATCG 602
Query 438 ACAAAGTCTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCACTTT-TTGGGAGTGGTGA 496
|||| || |||||||||||||||||||||||||||||||||| ||| |||| ||| ||||
Sbjct 603 ACAAGGTTTACAGGGTCACAAGCAATGGCTAGCAGAGGTTCAGTTTCTTGG-AGTAGTGA 661
Query 497 ATCACCCTAACGTTGTGAGGCTCTTAGGGTATTGCTCAGAGGAC----AGA--G--A--G 546
|||| || |||||||||| |||| |||| |||||||| || ||| ||| | | |
Sbjct 662 ATCATCCGAACGTTGTGAAGCTCATAGGTTATTGCTCGGAAGACGGCGAGACTGGGATCG 721
Query 547 AGA--CTTTTGGTTTACGAGT-TGATGTCTAATCGCAGCTTGGAGGATCATCTCTT-C-A 601
||| ||||||||||| |||| | ||||| ||||| || || ||||| |||||||| | |
Sbjct 722 AGAGGCTTTTGGTTTATGAGTAT-ATGTCGAATCGAAGTTTAGAGGACCATCTCTTTCCA 780
Query 602 C-TCTAAGA-ACCTTAACGTTGTCGTGGAAACAAAGGCTCGAGATCATGCTTGGTGCAGC 659
| || | | || | | || |||||||| |||| |||||||||||||||||||||||
Sbjct 781 CGTCGATCACAC---A-CATTACCGTGGAAAAAAAGACTCGAGATCATGCTTGGTGCAGC 836
Query 660 TCAAGGATTGGCTTATTTGCACGAAATCCAGGTAATATA-CAGAGACTTCAAATCATCAA 718
| |||||||||||||||| || ||| | |||| ||||| | |||| |||||||| || |
Sbjct 837 TGAAGGATTGGCTTATTTACATGAACTTAAGGTTATATATC-GAGATTTCAAATCGTCTA 895
Query 719 ATGTGCTATTAAATGAAGAATTCCATCCGAAATTATCCGATTTTGGTCTCGCTAGAGAAG 778
||||||| ||| | | |||||| |||||||||||| || ||||| || || |||||||
Sbjct 896 ATGTGCTCTTAGACCATGAATTCTGTCCGAAATTATCAGACTTTGGGCTTGCCAGAGAAG 955
Query 779 GTCCCGAAGGAGACAATACTCACGTTACAACCGCAAGAGTTGGAACAGACGGCTATGCCG 838
| || || || ||||||||||| || || |||||||||||||| ||| |||||||||| |
Sbjct 956 GGCCTGAGGGCGACAATACTCATGTCACTACCGCAAGAGTTGGTACACACGGCTATGCAG 1015
Query 839 CTCCCGAGTATGTA-ATAACCGGTCACCT-CAAGACACATTGCGATGTATATAGCTTTGG 896
|||| || || || | ||| ||||| || | | | | ||||||| |||||||| ||
Sbjct 1016 CTCCTGAATACGTGCA-AACAGGTCATCTTCG-GTTAAAGAGCGATGTCTATAGCTTCGG 1073
Query 897 AGTTGTTTTGTACGAAATTATCACTGGTCGTCGCAC-ATTG-GAACGAATGAAACCTTTA 954
||||| | ||||| || || || || || || || |||| || ||| || || |
Sbjct 1074 TGTTGTGCTCTACGAGATCATAACCGGACGCCGAACCATTGAGAG-GAAC-AAGCCAGTG 1131
Query 955 GCTGAACAAAAGCT-TCTAGAATGGGTCAAAAAATATCCTATTAATAG-CAAAAGATTCA 1012
||||||| || ||| | | || ||||| ||| | |||||| | |||| ||| | ||||
Sbjct 1132 GCTGAACGAAGGCTAT-TGGATTGGGTGAAAGAGTATCCTGCTGATAGTCAACGG-TTCA 1189
Query 1013 AAATGATCGTTGACTCCAAGCT-ATGCAATAAGTATCCAATTGCTATG-G-TCAGGAGAG 1069
|||||||||||| || | | | |||| || |||||| |||| | | | |||||
Sbjct 1190 GCATGATCGTTGAC-CCTCGGTTACGCAACAATTATCCAGCTGCTG-GAGCT-AGGAGTT 1246
Query 1070 TGGCTAAATTGGCTGATCATTGTGTGAACAAGATCGATAAAGAAAGACCTACCATGGCCT 1129
|||||||||||||||||| |||| |||| |||| ||||||||| |||| || ||||
Sbjct 1247 TGGCTAAATTGGCTGATCTTTGTCTGAAAAAGAACGATAAAGAGCGACCCACAATGGAAA 1306
Query 1130 TTGTCGTCGAAAG 1142
|||| || |||||
Sbjct 1307 TTGTAGTAGAAAG 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45137533728
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5