BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G17670.1

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg329762 jgi|Araly1|329762|fgenesh1_pm.C_scaffold_7001989           706    0.0  


> Ahg329762 jgi|Araly1|329762|fgenesh1_pm.C_scaffold_7001989
Length=471

 Score =  706 bits (382),  Expect = 0.0
 Identities = 450/481 (94%), Gaps = 11/481 (2%)
 Strand=Plus/Plus

Query  65   ATGGAGGTTTCGATGAGAAAGCCTTATTTCATAGAAGAAGAAGACGATGGTTTTGTTTCT  124
            ||||||||||| | |||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1    ATGGAGGTTTCAACGAGAAAGCCTTATTTCATAGAAGAAGAAGACGATGGATTGGTTTCT  60

Query  125  TTATCTGAGATGGAAGCTGGAGTTTCAAGTCCTTCTTGTTACAACTATCCTCAGAGTTAT  184
             ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||
Sbjct  61   CTATCTGAGATGGAAGCTGGAGTTTCAAGT-C--CTTGTTACAACTATCCTCAGAGTTAT  117

Query  185  TATTATAACCATCATCATCATCAGTACTCTGTTTCATCTCCCAGATCTGGAAAATTTCAT  244
            || | | | |  |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct  118  TA-T-T-A-C--CATCATCATCAGTACTCTGTGTCATCTCCCAGATCTGGAAAATTCCAT  171

Query  245  GATTTTAGATTCGACAATAGCTATTACGGTTATG-GACAGCCTCATTTCTTGGACTCTTG  303
            |||||||||||||||||||||||||||||  | |  ||  ||||||||||||||||||||
Sbjct  172  GATTTTAGATTCGACAATAGCTATTACGGACA-GCCACTTCCTCATTTCTTGGACTCTTG  230

Query  304  CTTCCTCTGCAAGAAACGTCTTGGTGATAACAGAGACATCTTCATGTACAGAGGAGACAC  363
             |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  231  TTTCCTCTGCAAGAAACGTCTCGGTGATAACAGAGACATCTTCATGTACAGAGGAGACAC  290

Query  364  ACCGTTCTGTAGTgaagagtgtagagaagaacagatagaaagagacgaagcaaaagagaa  423
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  291  ACCGTTCTGTAGTGAAGAGTGTAGAGAAGAACAGATAGAGAGAGACGAAGCAAAAGAGAA  350

Query  424  gaaacagagTCTGTCTACATCTGTGAAAGCTATGAGAAGAAATGAAAAGCGAAGCTCTTC  483
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  351  GAAACAGAGTCTGTCTTCATCTGTGAAAGCTATGAGAAGAAATGAAAAGCGAAGCTCTTC  410

Query  484  TTCTTCTCCAACTAGATCTCGTAACTATGCTTTCCGCACTGGAACTGTTGCTGCTGCCTA  543
            | |||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct  411  TACTTCTCCAACTAGATCTCGTGATTATGCTTTCCACACTGGAACTGTTGCTGCTGCCTA  470

Query  544  A  544
            |
Sbjct  471  A  471



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30727071102


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5