BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17680.1
Length=976
Score E
Sequences producing significant alignments: (Bits) Value
Ahg890445 jgi|Araly1|890445|Al_scaffold_0007_2431 1218 0.0
> Ahg890445 jgi|Araly1|890445|Al_scaffold_0007_2431
Length=939
Score = 1218 bits (659), Expect = 0.0
Identities = 846/933 (91%), Gaps = 25/933 (3%)
Strand=Plus/Plus
Query 35 TCT-TCTCTGATAGCTCAATGGCGATTCAAGCTCAGCATCCTTCACGTTTCTTCTTCAAC 93
||| |||||||||| | ||||||| |||||||||||||||||||| |||||||||||| |
Sbjct 13 TCTATCTCTGATAGTTTAATGGCGGTTCAAGCTCAGCATCCTTCAAGTTTCTTCTTCATC 72
Query 94 AACAGTAACGGACAAGAAGCTAGTGATTGTTCGTTGCAGCCTCAAGACACTCCTTTCACT 153
|||||||||||||||||||| | |||||||||||| |||||||||||||||| |||||||
Sbjct 73 AACAGTAACGGACAAGAAGCGAATGATTGTTCGTTACAGCCTCAAGACACTCATTTCACT 132
Query 154 AATTTCACCAAAGCTGGGGTTGATTCAAGAAAACGATCAAGAGAAGTTTATTCA----T- 208
||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 133 AATTTCATCAACGCTGGGGTTGATTCAAGAAAACGATCAAGAGAAGTTTATTCATCGGTG 192
Query 209 -------CGGCTCTGATGAACCCTCCACCTCCAAAACCGTCGCAAGTTATTGA-TATAAC 260
|||||| ||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 193 ACGACGACGGCTCCGATGAACCCTCCACCTCCAAAACCGTCGCAAGTTATTGACT-TAAA 251
Query 261 CGAGTTGTTGCAGAAAACGCCTAACGTGGTTTCCACTGGTCTTCGATTATTTCATGATCA 320
||||||| |||||||||||||||| |||||||| |||||||||||||||| |||||| ||
Sbjct 252 CGAGTTGATGCAGAAAACGCCTAATGTGGTTTCTACTGGTCTTCGATTATCTCATGACCA 311
Query 321 GTCACAGAATCAACAACAGtttttttCTTCTCTTCCCGGAGATGTTACCGGAAAGATTAA 380
|||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||
Sbjct 312 GTCACAGAATCAACAACACTTTTATTCTTCTCTTCCCGGAGATGTTACCGGAAATATTAA 371
Query 381 ACGGCAAAGAGATGAACTAGACAGATTCATTCAGACTCAGGGTGAAGAGTTGCGGCGTAC 440
|||||||||||||||| |||||||||||||||| ||||||||||| || ||||||||||
Sbjct 372 ACGGCAAAGAGATGAATTAGACAGATTCATTCAAACTCAGGGTGAGGAACTGCGGCGTAC 431
Query 441 GTTAGCGGATAACAGAGAGAGACGCTACGTAGAGTTATTGTGCGCTGCGGAGGAGATAGT 500
||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 432 GTTAGCGGATAACAGAGAGAGGCGCTACGTAGAGCTATTGTGCGCTGCGGAGGAGATAGT 491
Query 501 CGGACGGAAATTGAGaaaaaaaGAAGCGGAGTTGGAGAAAGCCACGCGCCGTCACGCTGA 560
|||||||||| | ||| |||||||||||||| |||||||||| |||||||||||||||||
Sbjct 492 CGGACGGAAAGTCAGAGAAAAAGAAGCGGAGCTGGAGAAAGCAACGCGCCGTCACGCTGA 551
Query 561 GCTAGAAGCGCGTGTAGCTCACATCGTGGAAGAGGCGCGAAACTGGCAGTTAAGAGCGGC 620
|||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 552 GCTAGAGGCGCGTGTAGCTCACCTCGCGGAAGAGGCGCGAAACTGGCAGTTAAGAGCGGC 611
Query 621 GACGCGGGAAGCTGAGGTGTCCTCGTTACATGCTCATCTCCAACAAGCCATAGCTAA-CC 679
|||||||||| | ||||| ||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 612 GACGCGGGAAACCGAGGTTTCCTCGTTACAGGCTCATCTCCAACAAGCAATAGC-AAGCC 670
Query 680 GCCTAGATACGGCGGCGAAACAGAGTACGTTCGGAGAAGACGGCGGAGACGCGGAAGAAG 739
||| ||||||||||||||||||||| ||||||||||| |||| ||| |||||||| ||||
Sbjct 671 GCCGAGATACGGCGGCGAAACAGAGCACGTTCGGAGACGACGACGGCGACGCGGAGGAAG 730
Query 740 CAGAGGACGCTGAATCGGTTTACGTGGATCCGGAGCGGATCGAATTGATCGGACCAAGTT 799
|||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 731 CAGAGGACGCCGAATCGGTTTACGTGGATCCGGAGCGGATCGAATTGATCGGTCCTAGTT 790
Query 800 GTAGGATTTGCCGGCGGAAATCTG-CGACGGTGATGGCATTGCCGTGTCAACATTTGATT 858
||||||||||||||| |||| || |||||||||||||||||||||||| |||| || |
Sbjct 791 GTAGGATTTGCCGGCA-AAATTTGGCGACGGTGATGGCATTGCCGTGTCGACATCTGGCT 849
Query 859 CTTTGT-AATGGATGCGACGTCGGAGCAGTGCGAGTCT-GTCCGATTTGCCTCGCCGTGA 916
|| ||| || |||||||||| |||||||||||||| || |||||||||||||||||||||
Sbjct 850 CTATGTGAA-GGATGCGACGGCGGAGCAGTGCGAG-CTTGTCCGATTTGCCTCGCCGTGA 907
Query 917 -AGACTTCCGGTGTCGAAGTTTTATTTTGATGA 948
| | || ||||||||||||||||| || ||||
Sbjct 908 CAAA-TTGCGGTGTCGAAGTTTTATATTCATGA 939
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36254894067
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5