BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G17690.1
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
Ahg946451 jgi|Araly1|946451|scaffold_702680.1 1583 0.0
> Ahg946451 jgi|Araly1|946451|scaffold_702680.1
Length=1022
Score = 1583 bits (857), Expect = 0.0
Identities = 928/963 (96%), Gaps = 2/963 (0%)
Strand=Plus/Plus
Query 19 GTTCTCTTCGTCGTCCTAGTCTTTGTCCCGTCTATATACTCGGCACCACCACCAAATTTA 78
||||||||| | |||||||||||||||||||||||| | ||||||||||| |||||||||
Sbjct 39 GTTCTCTTCCTAGTCCTAGTCTTTGTCCCGTCTATAAATTCGGCACCACCGCCAAATTTA 98
Query 79 ACAAAAGATTATTACCAAAAAACATGTCCCGATTTCAATAAAATCGTACGTGAAACCGTT 138
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 99 ACAAAAGATTATTACCAAAAAACATGTCCCGATTTCAGTAAAATCGTACGTGAAACAGTT 158
Query 139 ACACCAAAGCAAGGCCAGCAGCCAACGACAGCTGCTGGAACACTCCGTCTCTTTTTCCAT 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 ACACCAAAGCAAGGCCAGCAGCCAACGACAGCTGCTGGAACACTCCGTCTCTTTTTCCAT 218
Query 199 GATTGTTTCATGGAAGGATGTGATGCTTCCGTCCTTATCGCTACAAATTCTTTCAACAAA 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 219 GATTGTTTCATGGAAGGATGTGATGCTTCCGTCCTTATCGCTACAAATTCTTTCAACAAA 278
Query 259 GCCGAACGTGACGATGACCTCAACGAGTCGCTTCCGGGAGATGCATTCGACATTGTGACT 318
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 279 GCCGAACGCGACGATGATCTCAACGAGTCTCTTCCGGGAGATGCATTCGACATTGTGACT 338
Query 319 CGCATCAAAACCGCTCTTGAATTGTCTTGTCCCGGGGTGGTGTCCTGCGCAGACATCCTG 378
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 339 CGCATCAAAACCGCTCTTGAATTGTCTTGTCCCGGGGTGGTGTCTTGCGCAGACATCCTG 398
Query 379 GCTCAGGCCACACGTGACCTTGTCACAATGGTTGGTGGGCCTTTCTATGAAGTCAAACTG 438
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 399 GCTCAAGCCACACGTGACCTTGTCACAATGGTTGGTGGGCCTTTCTATGAAGTCAAATTG 458
Query 439 GGCCGTAAAGATGGTTTTGAGTCAAAAGCCCATAAAGTCAAAGGAAATTTACCTTTAGCG 498
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 459 GGCCGTAAAGATGGTTTTGAGTCGAAAGCTCATAAAGTCAAAGGAAATTTACCTTTAGCG 518
Query 499 AACCAATCCGTCCCCGACATGTTATCGATATTCAAGAAGAATGGTTTCACTCTAAAGGAG 558
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AACCAATCTGTCCCTGACATGTTATCGATATTCAAGAAGAATGGTTTCACTCTAAAGGAG 578
Query 559 CTGGTTGCGTTAAGTGGCGGGCACACAATCGGATTCTCACACTGCAAAGAATTCAGCAAC 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 CTGGTTGCGTTAAGTGGCGGGCACACAATCGGATTCTCACACTGCAAAGAATTCAGCAAC 638
Query 619 CGGATATTCCCGAAGGTTGATCCAGAACTCAACGCGAAATTCGCAGGAGTTCTTAAAGAT 678
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 639 CGGATATTCCCGAAGGTTGATCCAGAACTCAACCCGAAATTCGCAGGCGTTCTTAAAGAT 698
Query 679 CTATGCAAGAATTTCGAAACCAATAAGACGATGGCAGCATTTCTCGATCCGGTGACACCG 738
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 699 CTATGCAAGAATTTCGAGACCAATAAGACGATGGCAGCGTTTCTCGATCCGGTGACACCA 758
Query 739 GGAAAATTCGATAATATGTATTTCAAGAACTTGAAACGAGGTCTTGGACTGTTAGCTTCC 798
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 759 GGAAAATTCGATAATATGTATTTCAAGAACTTGAAACGAGGTCTTGGATTGTTAGCTTCC 818
Query 799 GACCATATATTGTTTAAAGATCC-TAGCACGAGACCGTTTGTAGAATTATATGCGAATAA 857
|||||||| ||||||||||| | |||||||||||||||||| |||||||||||||||||
Sbjct 819 GACCATATCTTGTTTAAAGA-CAGTAGCACGAGACCGTTTGTGGAATTATATGCGAATAA 877
Query 858 TCAGACGGCTTTCTTCGAGGATTTTGCACGTGCCATGGAGAAACTAGGCAGGGTTGGTGT 917
|||||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||
Sbjct 878 TCAGACGGCTTTCTTCGAAGATTTTGCACGGGCTATGGAGAAACTAGGCACGGTTGGTGT 937
Query 918 TAAAGGCGAAAAAGATGGAGAAGTGAGACGTAGATGTGATCACTTCAACAAGCTTAACGT 977
||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 938 TAAAGGCGAAAAAGATGGAGAGGTAAGACGTAGATGTGATCACTTCAACAACCTTAACGT 997
Query 978 ATA 980
|||
Sbjct 998 ATA 1000
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36445508652
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5